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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0015300 |
| Transcript ID | LotjaGi5g1v0015300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT4G36550.1 ARM repeat superfamily protein; Swiss-Prot: sp|O23225|PUB5_ARATH U-box domain-containing protein 5; TrEMBL-Plants: tr|I3SA23|I3SA23_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0015300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3085904..3088476) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGTACGATCTACTAAAAAATTTGGGAGTCTCACTAGCCACATAAATTTTTTATCCAATGGAATAGAGAGGATTAAA AAGAGCTGCTAGACTGCTAGTGCTACAAACAATCGATGATTGACAATAACGTGAAAACAGACAGAACCGTGTTCATAGTG AAGTCAAAGACATCTTCAAACAGAACTGCACGATGATGCCTCTTTTCACTGCTCCCCATTGACCTGTCTGTTGATTCAAC AAATATATTCACTTTAACTTTGCAAGCTAACCCATTAGTGTGTTTCTTCTTCTTCTCTTCCTTGGTCCATACTCCATTGT TGTCTCTGAGTTCAGATCAAAAGCTATGATGATGACCAAAAACGGTGCTACAACTTTGCAGATTACAATTCCAAGCTATT GTGAAGTTAAGGTACCGTCAAGTCTCTGCTTTAGCCATCAGGAATTAATGACACCATCATCACCAACAAGTTTTGATTTT TAAGTAAAGGGTGTGTCAAAGTTATTGAATTTAGGAGTACCAACATGCTTAAATGGTCTTCTGATCATTCTAAAGTAGCT TTCAGGAATTGATTTTCTAGGCGTAGAACTAGAATAGCAAAATCCAAGGACCATCATTGAATCTCTTTCACAAGAGGAAA AAACTTGGCTCAGACTTTTTGAGTTTGACTTGTGTGTTTTAGTTGAGTTATGATTTATTCATACTCTCACTTGTGCAGGT ATACCGATCATTATGCATAGAGCTTCATGGATTCATTGGTAGAATTTTGCACTTATTATTGGATATCGAATCTGCCAGAC CAAATTGTGCTTTAGCAATGCAGGCATTGTGCTCATTGCACTTCACTTTGGATAAAGCCAAGTCAGTCATCAAACATTGT TCTGAGTCAAGTCAACTCTACCTGGTACTTTTTTAACTTGAAACTATGACTCTCGTGCTGAGAGATCATTTTTAACTTAG TTTAATATATATAATTGTCAACTATAATCATTGAATAATGACTTATTATGTTGAAACTTTGACTCTAGAGCTGACATGTC AATTTAAACTGTATATAGCGTATTTGCATTTATTTTTCTTTTGTTAGAATCGATTCTTACATTTAGATGCTATCCACAGA TGCTTTTTCTAGAATTGATTCTCTCACCAGAGCCAATTGTAGAAGGACATTGAAATATGCACATAATTGTCTACTAAAAT CTTTGAATACTGACTTATTGTCTTGTTTCTTAATATTCTTTGGATGGTATCAATTATCAAATATTAATTTGAAGGAACTA ACCTTCTAATTTCCAAACTGATTAGGTAATCACATCAAACAAGATACTTTCAAGATGTGAAAAAATAAGAAGTGCTTTTG AGTTGTACTTGGCTCAGATTCAAAATGCAGTTCCAATACCATTGGCTGCTGAGGTTGGTTTATGCTTACTAATTAGCCTT ATACACAGAATTGATTTTTTTCTTTTATAGAAACCCATAATTGGAATAGTATTTATTGCACTAAAGCATATTTGGGTCAC CTTTTTGGCTTTTTCAACCATGTTTGGATTAGCTTCTCTTCACTCAAAGTCATTATGAAATCTAGAAGTTACTCACAGAA GTATCTTCCCAGAATTGATTCTGACTCCAGATTCAATCATAAAAGAATTTTCAAACATGTATCATAATCTATTTTAAAAC TCAAATTCACGGAATCTTTTCCATAGAATTGATTCTGGTTTCAGAATCATTGTAGAAGGATATCCAAAACATGCACAAAA TATTCCAAATGCTTGAATTTTTGTGACTTGTCATTTGTGCAACTTGGTAATTGAGTCTTGGGAATTGGTCAACAGATATC TGCAATACTTCGTGATCTGAGGGACACAGAATTTTCCCTGGAATTTGCAGAAGAAGAGGCTAGGAAAGTAGTGTTGTCCA TGTTTGAGAAGAATTTTCCTGATTCAGTGTCTATGGAGAATGCAGAACTTGAAGCTATTCAAATTGCAACTTTGAGGTTG AATATCAAATCTTCATCCCATCTCTTAGTAGAGAAAGCAACTCTTAAGAGGCAACTTAAAAATGTCAATGGCACAAACCA AAAGGAGAAGGAACTTCTAGAATACCTTTTGTATTTGTTGATCAAATATGAGAAACTCATTTGCCAGGTTCAAAATGGAA GCCAAACCAGTCCTTGAAACAAGAGTGTCATGACTAATCCTTTGAGCATGAGTTGGTTGTGGATGAAGCAATATGTAACA ATCAAGTCAAGGACTCTATTAACACACAAGTTGAAGATTTATGATTATTTAGGACTTGAGAGGTTGTTTTGCTTTTTTAC TTATTATTAGAATTTAGAAGTATTTATTTGAATTTGAATTCCTCCAGCCAGGTGTTTTAATTCCAGTGTAAAATATTTGT TACATCCTTGAAGTTTTGGCACATTTTCACTACCCCAAGTCAAACTGGTACATGTTGTTGTGCCAAGGGGCCGTTATGCC CCTTGCTAAAGCATATGACTATTTTTTTTGTATCTATTGAGCAAAAAGTTGCAATTGTATAGTACATATACATAATACAT AATTTACACAACA
CDS sequence (LotjaGi5g1v0015300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATGACCAAAAACGGTGCTACAACTTTGCAGATTACAATTCCAAGCTATTGTGAAGTTAAGGTATACCGATCATT ATGCATAGAGCTTCATGGATTCATTGGTAGAATTTTGCACTTATTATTGGATATCGAATCTGCCAGACCAAATTGTGCTT TAGCAATGCAGGCATTGTGCTCATTGCACTTCACTTTGGATAAAGCCAAGTCAGTCATCAAACATTGTTCTGAGTCAAGT CAACTCTACCTGGTAATCACATCAAACAAGATACTTTCAAGATGTGAAAAAATAAGAAGTGCTTTTGAGTTGTACTTGGC TCAGATTCAAAATGCAGTTCCAATACCATTGGCTGCTGAGATATCTGCAATACTTCGTGATCTGAGGGACACAGAATTTT CCCTGGAATTTGCAGAAGAAGAGGCTAGGAAAGTAGTGTTGTCCATGTTTGAGAAGAATTTTCCTGATTCAGTGTCTATG GAGAATGCAGAACTTGAAGCTATTCAAATTGCAACTTTGAGGTTGAATATCAAATCTTCATCCCATCTCTTAGTAGAGAA AGCAACTCTTAAGAGGCAACTTAAAAATGTCAATGGCACAAACCAAAAGGAGAAGGAACTTCTAGAATACCTTTTGTATT TGTTGATCAAATATGAGAAACTCATTTGCCAGGTTCAAAATGGAAGCCAAACCAGTCCTTGA
Protein sequence (LotjaGi5g1v0015300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMMTKNGATTLQITIPSYCEVKVYRSLCIELHGFIGRILHLLLDIESARPNCALAMQALCSLHFTLDKAKSVIKHCSESS QLYLVITSNKILSRCEKIRSAFELYLAQIQNAVPIPLAAEISAILRDLRDTEFSLEFAEEEARKVVLSMFEKNFPDSVSM ENAELEAIQIATLRLNIKSSSHLLVEKATLKRQLKNVNGTNQKEKELLEYLLYLLIKYEKLICQVQNGSQTSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 15 | 9 | - | – | |
| Phobius | 16 | 19 | 4 | - | – | |
| PANTHER | 18 | 228 | 211 | 1.0E-70 | – | |
| PANTHER | 18 | 228 | 211 | 1.0E-70 | – | |
| Phobius | 20 | 233 | 214 | - | – | |
| Coils | 187 | 207 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0015300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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