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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0018000 |
| Transcript ID | LotjaGi5g1v0018000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycosyltransferase; TAIR: AT1G19360.1 Nucleotide-diphospho-sugar transferase family protein; Swiss-Prot: sp|Q9LN62|RRA3_ARATH Arabinosyltransferase RRA3; TrEMBL-Plants: tr|V7CU22|V7CU22_PHAVU Glycosyltransferase; Found in the gene: LotjaGi5g1v0018000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3517633..3520225) extracted from Lotus japonicus Gifu genome v1.2.
CAAGTACACCATGGACCACCAATTTATGCACGGAGTTGAGCAGAGACGATAACAACCCAAACCTAATCTCTTGTCCAAGT CAATGTCTCTTGGTAAACATGATATGAATACGAGTAATTATTCATTTACATTTCACTCTCTCATAAATCTCATTTTCACT TTTTTTTCTTTCTATTTCTTTTATTCATTCACATTTCTTGTCATTATCTTACTCATGTATAAGAGTAATTAATATGTAAA CAAACTATTTTTCAACAAAACATTTTCCAATAAAAAAGATTGCAAACTAAGAAAGATATGACAGCCAGATAAACATATGA AAGCATATATTAAAGTTAAACAGTATTTTGTAGCTCTTATTTGTGGATTTAACTGAAGAAAAGAGACATTAATACATTAA TTAAATACACACACAAACTGGGAAGACAGTTGTGTTGTTATTGTGTAGTGTAATGAATCCCTCTTCTCTGTTTCTCTCCA TTTGCCATCGAACCAGTTGACGACCACTTCACCTCTCTACTCCACCTCGCAGTGCAGATCATCACCATGGCTGGTCGTAG AGACGCCTTGCTCACCAGAGACAAATCCCAATCCGCCGCCGGATCTCGGATCGCCGCCGCCGTACTCATCGGCGTTCTCC TCGGCTGTATCTTAGCCTTCTTCCTACCCCACGGCTTCTTCACCTCCTCCACCACTCCCATCCTCAATCACAAGGTTCCC TTCACTCTTTCCTGCATTAATATCCTTGTTTTCTTTCATGGGTCTTGTTAATATTGAATGCTGATATTTTTATTGAAAAT CTGGGCACTGTTTAGATGGTTTCTTCTGCGTGTGAATCGCCGGAACAACTTGATGCGTTGAAACTGGATATTGAGTCTGC CAAGGAGAAGAATTCTGAGCTGAAGAAGAAGGTTAGGGGGCTAATGGAGAAGCTGCGTATGGCGGAGCAAGGGAAGGGTC ATGCTCAGGAGCAGGTTATTGTGCTGGGTGAGAATCACAAGGCTGGTCCTTATGGCACTGTCAAGGGTCTCAGAACAAAC CCACCTGTGATTCCTGATGAATCAGTGAACCCCAGATTGGGTAAATTGTTGGAGGAGGTTGCTATTTATAAGGAGCTTCT TGTTGTTCTTGCTAACACTAATGTGATGGAGATGTTGGAGGTGTGGTTCACCAATATCAAGAGGGTTGGCATACCTAATT ACTTGGTTGTTGCATTGGATGATAAAATTGAGGAGTTTTGCAAGGCAAATGATGTTCCTGTTTATAGGAGGGACCCGGAT CAGGGTGTGGATTCGGTCGCAAAGACGGGCGGGAACCATGCTGTTTCCGGGTTGAAGTTTCGGATTTTGAGGGAGTTTCT GCAACTGGGTTACAGTGTTCTTCTGTCAGATGTTGATATTGTGTACTTGCAGAACCCCTTTGATTATCTTTATAGGGATT CGGATGTGGAGTCTATGTCGGATGGTCATGATAATAGGACAGCTTATGGTTTTAATGATGTCTTTGATGAGCCTTCAATG GGGTGGGCTAGATATGCTCATACCATGAGAATATGGGTTTATAACTCTGGTTTCTTTTACATAAGGCCTACTCTTCCTTC GATTGAGCTCTTGGATCGTGTTGCTAGCCGTCTTTCTACGGATTCAAAAGCGTGGGATCAGGCTGTTTTTAATGAAGAGC TGTTTTTCCCTTCACATCCGGGTTATGATGGACTTCATGCTGCAAAAAGGACAATGGATATGTACCTTTTTATGAACAGC AAGGTTCTCTTTAAGACTGTAAGGAAAGATGCTAAGCTCAAGAAGTTGAAGCCAGTGGTTGTACACCTTAACTACCATCC TAATAAATTTGATAGGATGAAGGCTGTAGTTGATTTCTATGTCAATGGGAAACAAGATGCGCTAGACAGTTTCCCTGATG GTTCTGATTGATAGGAACATCAAAATAGTGATGAGGGTTCTAACACGGGGATGGAATCATGTGCTCAAGCTGATGTGATA CAGAGGCAACCATTTTGGTTCAGGATCGATTTTATCTCATTGCACTTTCTGTTTTCGTTTTTACAATCTGTTCTGTATGA TATCATTGATTAAACAGGTTTCTGTACTCTAGTCTATGCTCTTAACTTTGTATATGTTTTGTTTTCTGTGTATGAAGTGG AAATTCAATGCTTATGCAACCTTTTTAAAGGCAAATGAGAAAAATTAACTGCTGCTGCTATTACAGTTCTAGTGATGTTT TCTAAAGATTGTAATGGGGATCTTTAGACTCTAGTTGCCTGCATATTGTTTTCCGCATTGAGGAACCAGCTGAAAAGGAA AATGATACTCCAAATCTTGCATACTTGTTATTGTTAGTGTTTTGGCATTTGTTACAGTTGTTTCATTATAGCTTCTTGTT CTGGATTTGACTCTTTTCTCTTGCCACATCCCAACATGGTCTCAAGTACCTTCCCATAACTCTTCTCCTTACATCACATG GTGGGTTTCTTTCTTTTTTCCATGCATAACATGAAAAATGATGAATCACATGTCAGCTGTACAGGAGAGTTGACTTAGGG CGCTAGTCAATGAATCAAATGTACAGATAGTGC
CDS sequence (LotjaGi5g1v0018000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGTCGTAGAGACGCCTTGCTCACCAGAGACAAATCCCAATCCGCCGCCGGATCTCGGATCGCCGCCGCCGTACT CATCGGCGTTCTCCTCGGCTGTATCTTAGCCTTCTTCCTACCCCACGGCTTCTTCACCTCCTCCACCACTCCCATCCTCA ATCACAAGATGGTTTCTTCTGCGTGTGAATCGCCGGAACAACTTGATGCGTTGAAACTGGATATTGAGTCTGCCAAGGAG AAGAATTCTGAGCTGAAGAAGAAGGTTAGGGGGCTAATGGAGAAGCTGCGTATGGCGGAGCAAGGGAAGGGTCATGCTCA GGAGCAGGTTATTGTGCTGGGTGAGAATCACAAGGCTGGTCCTTATGGCACTGTCAAGGGTCTCAGAACAAACCCACCTG TGATTCCTGATGAATCAGTGAACCCCAGATTGGGTAAATTGTTGGAGGAGGTTGCTATTTATAAGGAGCTTCTTGTTGTT CTTGCTAACACTAATGTGATGGAGATGTTGGAGGTGTGGTTCACCAATATCAAGAGGGTTGGCATACCTAATTACTTGGT TGTTGCATTGGATGATAAAATTGAGGAGTTTTGCAAGGCAAATGATGTTCCTGTTTATAGGAGGGACCCGGATCAGGGTG TGGATTCGGTCGCAAAGACGGGCGGGAACCATGCTGTTTCCGGGTTGAAGTTTCGGATTTTGAGGGAGTTTCTGCAACTG GGTTACAGTGTTCTTCTGTCAGATGTTGATATTGTGTACTTGCAGAACCCCTTTGATTATCTTTATAGGGATTCGGATGT GGAGTCTATGTCGGATGGTCATGATAATAGGACAGCTTATGGTTTTAATGATGTCTTTGATGAGCCTTCAATGGGGTGGG CTAGATATGCTCATACCATGAGAATATGGGTTTATAACTCTGGTTTCTTTTACATAAGGCCTACTCTTCCTTCGATTGAG CTCTTGGATCGTGTTGCTAGCCGTCTTTCTACGGATTCAAAAGCGTGGGATCAGGCTGTTTTTAATGAAGAGCTGTTTTT CCCTTCACATCCGGGTTATGATGGACTTCATGCTGCAAAAAGGACAATGGATATGTACCTTTTTATGAACAGCAAGGTTC TCTTTAAGACTGTAAGGAAAGATGCTAAGCTCAAGAAGTTGAAGCCAGTGGTTGTACACCTTAACTACCATCCTAATAAA TTTGATAGGATGAAGGCTGTAGTTGATTTCTATGTCAATGGGAAACAAGATGCGCTAGACAGTTTCCCTGATGGTTCTGA TTGA
Protein sequence (LotjaGi5g1v0018000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGRRDALLTRDKSQSAAGSRIAAAVLIGVLLGCILAFFLPHGFFTSSTTPILNHKMVSSACESPEQLDALKLDIESAKE KNSELKKKVRGLMEKLRMAEQGKGHAQEQVIVLGENHKAGPYGTVKGLRTNPPVIPDESVNPRLGKLLEEVAIYKELLVV LANTNVMEMLEVWFTNIKRVGIPNYLVVALDDKIEEFCKANDVPVYRRDPDQGVDSVAKTGGNHAVSGLKFRILREFLQL GYSVLLSDVDIVYLQNPFDYLYRDSDVESMSDGHDNRTAYGFNDVFDEPSMGWARYAHTMRIWVYNSGFFYIRPTLPSIE LLDRVASRLSTDSKAWDQAVFNEELFFPSHPGYDGLHAAKRTMDMYLFMNSKVLFKTVRKDAKLKKLKPVVVHLNYHPNK FDRMKAVVDFYVNGKQDALDSFPDGSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 34 | 34 | 6.0 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 3 | 427 | 425 | 3.8E-234 | – | |
| PANTHER | 3 | 427 | 425 | 3.8E-234 | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 21 | 40 | 20 | - | – | |
| Phobius | 41 | 427 | 387 | - | – | |
| Coils | 68 | 102 | 35 | - | – | |
| SUPERFAMILY | 159 | 394 | 236 | 1.97E-9 | ||
| Pfam | 182 | 404 | 223 | 2.9E-58 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0018000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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