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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0021700 |
| Transcript ID | LotjaGi5g1v0021700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal peptidase subunit; TAIR: AT5G27430.1 Signal peptidase subunit; Swiss-Prot: sp|Q53YF3|SPC3B_ARATH Signal peptidase complex subunit 3B; TrEMBL-Plants: tr|I3S8P8|I3S8P8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0021700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3922837..3927304) extracted from Lotus japonicus Gifu genome v1.2.
CACAATTAACATTTTCCGGAGTTAAATGCCATTATATAACTCATAAGAGAGAATTGAGGTGCAATTTTCATTTCATTTTA GAACAGAACAATTGGGGTTAATCCCGACCGTGAAACACTGAAACCTGGGTCTGAAACCTGGGTTTCCTTCCCACAGTTAC TCGCCTTGCCACCACTATCTCCGTAACCGGTGAGTTCTCCGATCTCTATCTCCGACCGTTTCTGGTTTTTTCCCTCTCAT TTCTCAACCTCGCCGACTCAGTCAACCCCTGAGGATAATGTAACTTCAACTTGCTTGAGGGTTTCGGCTACTAATTGATC AGATGCATCACTATTTGTGTTCCAGCTGTTTTCACTGATGTTTACAATTTGACAATTTCTAATTTACCGCTCAATTATGT GTGTGCATTTCATTTTATTTTAAGAGACATTTTATCTCCCATTTAAGTGTGTTTAGATTTCCGTTGAACTCGAAGTCTCA ATGTGCCAAAATATTGCTTCGCCAATTCTTCAACGTGGCAAATTCTAGCTTTTCCGTTGATACCTTGAGATAAGTGAAAT CACGTTTGCGTTTAAGATGTCTGTGTTTAGACTAATGTAGTACTTGAGTGTGCAAGAGAAGAGTGAGGGCCCACTGAAAT GTGAGGCTTGCATGTGAAGTAGGCCAAGGATTCTCTTTGATCTTAGTTTGTAGAGAATATGAAAAATAAAAGTTTCTCCT TTTTCAGTTTGTTCCTTGTTAATATCATGCACAAGGTTATAGTCTCCGTTCACATTTCTCTATGTGGAGATTACATATCC CTAGAAATATTGTTATTTTGTGTTGAGCCTTGAATTTCTTAACAGATTTTCTTCTCGTGTGCAAGCATTATGTGAATCAT GAAGTCTTTTAGTTGAATTGGGTGGATATCCTATCATTTTTTATTTTATTTGTGTCATAAGAAGCCTTTTCAAATAGAAG GCATTTTGGTCTTTGGAAGGAAGAGTTGCTTGATCAAATTTGATATTTATTTTCTTTCTGAAGTGTTGATTGTGTCTCGC AGTCGAAGAAGAAACCCTAAACCAAAATGCATTCATTCGGCTACAGAGCTAACGCTTTGCTAACCTTTGCCATAACCATT CTGGCCCTTATGTGTGCCATGGCCTCTCTATCTGACACGCTCAGTTCCCCCTCACCCTCTTCCCAAGTCCAGGTCAGGCT TTCTTTCCGTTCCTTAATTTCTTTCTTTACAAATCTGTGATTCTATAAATCTTGTCTCGGTTTTACCCACCGTTTTTTTG TGTATGCCAATGTAGGTATTGAACATCAATTGGTTTCAGAAACAGCCCAATGGCAACGATGAGGTATTTCTTATTTCTTA GTCGAAATTAATGTTCTGCTTAATGTGTCTTGCATTTTTTTTATGTTTTGTTTCTCATGCGCATCCTCTTCTGAATTTAG GAGTGTTTAAATGCTGCATTTTTTGTTGATTTTACTGTTCATTTGGTCAATGTTACTGATGATGTGATTCTGTTATGAAC TCGGTACAATTTTTGTTCCTTGGGCAATTTATTTGTCATAATCGTCTTAAGTTGTTGCTGTAGGAAAAATTACATTAATC CAGCCTTCACTATTTATATATGAGCAAGTTACCACTTGATGAGCTGTGGTTGCAACATGCAAGAATATGCAGTTAAAACA TGGCATGCTGGTTAATTTTATTGGTAGATTGTTGTGTCACATAGGAATGGTCTCTATGTGAATATACTGAAATGAAACGA CAGAGGAATAAAATGTATCCCTCATATTGAAAATGCTTGAGGTTTCAAACTATTTTAGTCAAGCCAAGTACTTAAAACTT GGGCTTGACTTATGAAAACAGGATAAATAATGCTCGAGCTTGACTCACTTATTTAAACTAGGCAAACTGAAAGCTTAGTT GAATAAATAAGCTTTTTATTTATTTATTGCATTCTCATGTGTATAGTCAGTCCTCTTGCTTTTAAATCTTATTAGGTTCA TGCTGTCAGTAGGAGGTTTTACCAAAGCATGTTACTGGTTGAGTCTTTGCTTATTAAATCATTGTAGGTTTTGATCTCTC CTAAATGAGTCAAATGTTATGAATTGGTAACATACTACAAACCTAGGAGCAGGGCAGGGATATTTGTTTCTGCAACTAAT GGGATAGTGAATCAACATATTTGATCTTGATGATTGATGAGGTCTAATAAAATTTCTAAGTTTTAGGATACTTACGTTTA AGAGTACGAATATTTGGTGAGTGGTAACTGCATCAATGCCTTGTTATTTAAACTAAAAGTAAACATTGATAGAAGTTTAT GATTTAACTTGTGAAATCATTTCTTACCTATATGTCTGCTCAAATAATGTTGATTTGAAAACTTGGTATTATGAAGTCAT AAAAATGCTTCCGAATTTGTAGATTTTCTTATGCAATTGCTTCAAATACTTGTTTGAATGTACATTTTTTTACATACGAC ATTCAAGTGATACTTGCACATGCTTGAAAGTTGAAACGAGTCAAGACCAAACCTAGAAATGAAACATCATGCTGGTTCTA GTCCTAGTATCTGAGTCTCAAACTACATATGATATGATGATCTGTATATCATATTGATTTGTAGACCAGCTCATTCTGAT CCCTGTCTGATATTCAAATTTAGTCTTTATTTATTGTTCGGTCTAATGTGGGATCCTTTTCATTCTTGCAGGTCAGCATG ACACTAAATATATCAGCTGATTTACAGTCTCTTTTCACGTGGAACACAAAACAGGTTCTTGACTTCATTTTTTCATTATA ATCATTTCCCTCCCCCTTTTTGCTTCTGAAAAGAATGGATATTGTTAGCAGAAAGTAAAATGTCAGGACTGGGTGGGGGA AGAATGGAAATTTATGATGTATCTGGTTTTCCATGTGTTGCATTATAATTTAATCTATGCTTCTTGTGTTCTCTTATATT TCCTTGTTATACTGTTTTACTTTGATTTCATCTTCTTCCAATGCTTCTATTTTTCTACATTGAGAGGTTATTGCAGTATC TTTTTTACTTCCTCTTAGTGTTATATTTTTTCTAGTCTGTATCAGTTTCATTTTGTCAAATATGTATTTCCATTATTGCC CTCTGATTTTTCTATGTTGTATATAGATTGTACTTCTATCGAAGTGTTAAAACTGTTTGATGTTACATATGCACAAGTTC CTTAGTTTTAATCAGTTATTTTAAACAGCTTGAAAGCTAGAATTTTAGTGTTGTCTAGAGGCTTAGCTTGTTCCTCTCTT ATAAGCTTGCAGGTTTTTGTATTTTTGGCTGCTGAATACGAAACTTCAAAGAATTCTTTGAATCAGGTATGATTTGATTA CTTTAATTGTTTTTGCAAACCTACGTTGAAACACAAACATCTAAATTGTAAGCTTGCCTGCTCCTTTTAGTAGAGGAATG AATAAAAGGAAGCTATAACTATAGTGGGTTGGTGTATCTTGAATTTCATTTGTTGAGGCTGCAGCTTCTGAGTTTGTTTT CACTGTTTTACTATTTGTGTCACTTGGACAACTGTTCTATTGCATTTTATGCTGCATCACTGCAATCTTTGGTATGTGTT GTGTCATATATGCTGCTTAGATTCTTGAGATGCCATTTTACAGATATCATTATGGGACGCTATCATTCCCTCGAAAGAGC GCGCGAAGTTTTGGATCCATACGTCAAATAAATACCGCTTTATTGATCAGGTATACAACTCTCCTATGATGTTATATGAC TAATATGAATTGCTTCAGGCTGCCTTAGACCTTAATTTTGCCATTTTTTCATGTCCAGGGAAGCAATTTGCGCAGTAAAG AGTTTAACTTGACTATGCACTGGCATGTTATGCCGAAAACTGGCAAAATGTCTGCAAATAAAATAGTCATGCCTGGTTAC CGATTGCCTGATGAATATATATAAAGCCTTCTTGTAATGTTAATGTTTTTGCTGTAACTTTAGTAGTTTCTATATCGGAT ATAAAAGGTTACTTCAAAGAACTTGGATCAGAGGAAAGAAATTCTTGTTTTGATTCTTGGAAATCAATAGGGATTGAATA CTTGATCATCACTTCATCAGAAATTAGCTTGTGGTTTTCAATTGTCTCTTGCATGTCTGAACTTACTTTTTTCCTCTAGG GAAAAAAATTATTATGCTATGATAAACCCTATAGTTATCGAAATTACTCATCCTTGTTCCCCTGGAGAAGTTTGAAGTAG TGACTCAATTTTCGCCACTCAGGGGACCTTACATTTTACATTCCATGGAAGCAACATGTCTTGTAAGGGAGAAATACACC ATCATCTACATTTAAATCCAATTAATATCACATTTTATCAAGAATCGGGAAATGAAAAAAAATCTACCGCTTAAATCTTC TCCTTACACTTGACTAAACCCCTTTTCCATCAAGCATGGCTTGTATTTGTCTATCTTTGCATTGGTTT
CDS sequence (LotjaGi5g1v0021700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTCATTCGGCTACAGAGCTAACGCTTTGCTAACCTTTGCCATAACCATTCTGGCCCTTATGTGTGCCATGGCCTC TCTATCTGACACGCTCAGTTCCCCCTCACCCTCTTCCCAAGTCCAGGTATTGAACATCAATTGGTTTCAGAAACAGCCCA ATGGCAACGATGAGGTCAGCATGACACTAAATATATCAGCTGATTTACAGTCTCTTTTCACGTGGAACACAAAACAGGTT TTTGTATTTTTGGCTGCTGAATACGAAACTTCAAAGAATTCTTTGAATCAGATATCATTATGGGACGCTATCATTCCCTC GAAAGAGCGCGCGAAGTTTTGGATCCATACGTCAAATAAATACCGCTTTATTGATCAGGGAAGCAATTTGCGCAGTAAAG AGTTTAACTTGACTATGCACTGGCATGTTATGCCGAAAACTGGCAAAATGTCTGCAAATAAAATAGTCATGCCTGGTTAC CGATTGCCTGATGAATATATATAA
Protein sequence (LotjaGi5g1v0021700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHSFGYRANALLTFAITILALMCAMASLSDTLSSPSPSSQVQVLNINWFQKQPNGNDEVSMTLNISADLQSLFTWNTKQV FVFLAAEYETSKNSLNQISLWDAIIPSKERAKFWIHTSNKYRFIDQGSNLRSKEFNLTMHWHVMPKTGKMSANKIVMPGY RLPDEYI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| PANTHER | 1 | 166 | 166 | 1.2E-91 | ||
| PIRSF | 1 | 167 | 167 | 9.7E-44 | ||
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 166 | 166 | 1.2E-91 | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| Pfam | 6 | 164 | 159 | 7.2E-53 | ||
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 29 | 8 | - | – | |
| Phobius | 30 | 167 | 138 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Signal peptidase complex | A protein complex that is located in the endoplasmic reticulum membrane and cleaves the signal sequence from precursor proteins following their transport out of the cytoplasmic space. | ||
| Biological process | Signal peptide processing | The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell. | ||
| Molecular function | Peptidase activity | Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi5g1v0021700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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