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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0021900 |
Transcript ID | LotjaGi5g1v0021900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb family transcription factor-like protein; TAIR: AT5G42630.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4; TrEMBL-Plants: tr|A0A151R6J5|A0A151R6J5_CAJCA Putative Myb family transcription factor family; Found in the gene: LotjaGi5g1v0021900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3940482..3944590) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTTTTCTATGACTGTGCATCGTACTTTGATGACTAATCTCTCAGCTTCCATAAATAACCACTACCCCTTTTCACTAA CTTTCAGTTCAAACCACCACCCCAGAAAAAAAATCTGATCTTTTCCTCTTTCCCTTCAATTTTTTATCTGACTAGTGACC AGTACTCTCTGCATCGAATTAATTCCCCTGCTTTAAAAATGGTGTTTTTTCAACCCTACTAAAAAGGCTATATCAGCTAG CTCCCCCCTCTCAAAACCAATGCAAATCATAAGTCACTCATGATATAATCACTACCTCAAATCCATCTCTTTCAGATCTT TCATTCATTCATTCTTCTCCTCAATTCAACTTTCACCCTTTAGCAATAGTTCTGTAACAAAACCTTTGATGTCTATCTCT AATTCACACCACCCAGTAATGCAAACCTTGTTCTCACCATTTTCAGAACCAGACCTCTCTTTGAACATAAGCCCTCCCTC TATTTCTGAAGCAAAAGCATCAGTTGGATGTAAAGCACTTTACAATAACGATATGTGTTCATTATCAACCTCTGATTCAG CTGGAAGTAGTGAAAGCGAGTTGAGCCATGAGAATAATGGCTTCAACAACCTCTGTCCTCCTCGTGAGCCCACATTGAGA TTGGGCTACGGAGCCGTGGATTTGAATCCCCACTATTCAGTTCAAGGAGGAGGCTTGAGAAACTTCAACCACCACCACCA TCACCTCCAACCTCGCGGCCACCCCGTCTATGGCCGGGAGTTCAAGCGCAATGCAAGGGTCGTTAATGGTGGTAAAAGAA GTGTTAGAGCTCCCAGGATGAGGTGGACAACCACCCTCCATGCTCATTTTGTTCATGCTGTTCAGCTACTTGGTGGTCAT GAAAGTAAGTTGATGATTTAACATTTAATCATCAAGCTAACTGCAAAGTACAAGCTATGCATGATTAGTTTCATAGTTCT TTCATTATTCTTTTCCAAAACAAAAAAAAAAAGATGGTTTCATTTATACTTTTGATGCATTCATATTTCACACCTACTTT TAATACGCTAGAATCATGTTCTTTATCTTCACAAACAATTTTTAAATTTACTCAGAAGCTTGTTCTCCCCCACAATTGAT TATTGTTTTGAAAGATTTCTAAACACGCACTTACTCTTTCATCTCATCAATTTTACTAATTTTATCCTCTTATATATTTT CATAATATTATATCACAAATCATATTTCACTTCTACTCTTATTCTTTTTGGGTGTTAAGTTGAATTGAGGTGTGAATGTA ATATTTTGCATTTTTTTATTTTATTATTCTATATAAAATGTGAAATTGATAAAACTAGGTTATGTCTAATTTTGGATGAT GATGTTGGTCAATTGCAGGAGCAACACCAAAGTCTGTGTTGGAGCTAATGAATGTGAAGGATCTAACCCTTGCACACGTC AAGAGTCACTTGCAGGTGGGGTTACTGTTCTCTCACATATTCTCCATTCTCCATTCACCATAGTCTTTCAGATCAATGAG TACTGAATTAAGTTCTTGTAGTTTTTCCCTTTTATTCTCTGAATAGAAAGAAAAGAAAACTATATTTAGCTGTTTCAAGT TATTGCATCTAGTAGTGGGGGAGGTAGAACAAGCACTAAGGACAAAAGGTATCTAGATGGGGTAATCTTAAAACTGCAAG AAAATCGTCAAATAGCTTCAAAGCATTCAAGGCAAAAGCCAATGCTACAACCAATTTAGCGTTAGCGTCCGGACCGTCAT TAAAATACTCAAAACTAAAATGTAGCGTTGTTGGTTTAGCTGACTCTAAGTTGACACAACTTACTTGTGGACTTTTCTTC TTCAGATTTTTATGTTATGTCTTAATGTCTGGGGTGTTCATAATGCAGATGTATAGAACAGTGAAGAGCACCGACAAAGG CATTACAGAAGGAGGTAATATATTTCTTCTTCCCATGGACCCAATTTTCATTTCTTGTATTATTAGTTATTCTCTTTGTT TGTGATATTTGGTTCTTAGTTTTAAGTCCTCATGTGAATTATTTAAGGTGGTGTCTAATAATACAAGAACAATGGCTCTG TTGATGATGAAATTTGCAGGTCATGGGCAGACAGATATTGGGTTGAGCCAAAGGCCAGGGATTGTTCCTCTGCATGGAGC ATCATCAGCAGTACCCAATTTATTGCCTCAGAAGTCCCACATCAGGTGAGAGATTGCATTAATTCATCAACCTTTTCTAC TTATCTTCTTTCTTTTTGTCTATCTCATTTTTTTTTCACAGAAGATAAAATTTCATTATATATATCATATATGTGACAAT TAATATTTTTTTAGATGGAAAATGAGACCATTTTAATAATTTTCTATCGTACATGCACGAATATTCACAAATGCCTCGTG TTTGGACTTTTTTTCTCTCCCTTTTCTTGCCAATTTTTCCTGTTTGTCTTTACCTATTTTATTACGGGGTTCCATAACTA GAAGTCTACTTACATATAGAATTTGACAAACTCAACCTAGTGTTTGTAGAGGTATATATGTATGGGGTGTCATTTTTAAC GTGCGCCCTTGATGATTCTTTCGGACTAACTCATCCACTAATATTGTCAATATGTCTTGATCCCAACATGTAGCAAAATG TCTAGCAATTGTTGCAAATCTCAATGTCTTGTAGTATGGACTAATATTAGTTTTTAAAGTTATTTTCGCACAATTAGTAA ACTTTTAAACGGGTGGCATCTTTTAAAAAAAAAATTATATGTAAGGAGTTCTTTTATTTTTCTTAGATTTAGAAATATGG AGAAAGAAAATGGAGTGAGAGAAATATAAAGTGCATGAAATAGAGAAATGAATGCAAATTAGCCAAAATTCTAAATGATG TAGAAATATATGTGTGTGATTAGATTCATATTTAAATTGATCGAAGTCTAGATTTTGTTTTGAATTTGGAATATTTTTGC TTACCACTGTTGAGTGCTAAAATGGGCTAACCAATATTAGTTTCCTTAAAACATGTTTACCTTTATACTAATATATCATC TCACTATACAATATTCATCAGAACATCGTGGCAATCATCATCAATAGAGACAAATACAAACAATAGCGGACAAAACTCCG AAATTGGTTTGACGTATTCTCGTCTCATGAAAGGATCAAATGATACCATGGTAAGAACTTGATCTCTTTCACTGTAGTTT TTGTTGCATGTACTATATGTTTTCTGAATGGTTTGCAATAATATTCAAACAGGGGAATGAGCATAATTATGCTGGCATGT CAAATTGCATGAAGGAGGGTTTGGATTCTATCCCTTTGTCACGTTCAGAGACTATGATTGACTTAGAATTCACCCTTGGA AGGCCCACTTGGCAAACAGAGCATGCCGAACCATCAAGAAGAGAGTTAACTCTTCTCAAGTGTTAAATAACCCTTTCCAA CAAATTCTGACACAGTTGGTAGATAGCGAGGTCCCTAAAACATGCCGACAAGATTTCAAATTTTAGCTGTGTGTATATGG AAAAATATTAGTCGAGAGAGGCAAAACTCACTTTGTTAATCTTGACGCTCTCGAAGAGATTAGTTTCGAACTATTGACAC ACCTAACCCTTTCCTTGTCATTAAAATGCTATACTACTACATGACATGGAGGAAAGAGAGAGGAATTATTCCATGTGAAT GATTTTATTTCGTGAAACATTTTGTCTAGAAAGAGGAAGGAGGAATAGGATAAATGTTTGCTATAAAACATATGCTTGAG TCCAAAGAACTTGAGGCATTGTCTTTGATGTCTTTTTCAATGTAAGGGATAACATTAAAAGAAAATAGAATGCCCCTTTC AGGGCATGGACCATGGCTTATATATTAGTTAGGCACACCACAGGACTCATTTGGAAGCTGATATTGGCCGGACAATGTGG GTCAAGTTTTTATGCCAGACTATCATCACATCGTTCTCATCATACCTGTACCCAAGACCAAGAGAATTATATATAGGGTG TTTGCTGTGGTACCTTAATTTAAATGAGGGTACAATACCTTAAATGATGTAAAACCTCTTTATTTCTAATTTTTTTTAAC TTATAAAAGCCTCTAGCGCCATTATTCAC
CDS sequence (LotjaGi5g1v0021900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTATCTCTAATTCACACCACCCAGTAATGCAAACCTTGTTCTCACCATTTTCAGAACCAGACCTCTCTTTGAACAT AAGCCCTCCCTCTATTTCTGAAGCAAAAGCATCAGTTGGATGTAAAGCACTTTACAATAACGATATGTGTTCATTATCAA CCTCTGATTCAGCTGGAAGTAGTGAAAGCGAGTTGAGCCATGAGAATAATGGCTTCAACAACCTCTGTCCTCCTCGTGAG CCCACATTGAGATTGGGCTACGGAGCCGTGGATTTGAATCCCCACTATTCAGTTCAAGGAGGAGGCTTGAGAAACTTCAA CCACCACCACCATCACCTCCAACCTCGCGGCCACCCCGTCTATGGCCGGGAGTTCAAGCGCAATGCAAGGGTCGTTAATG GTGGTAAAAGAAGTGTTAGAGCTCCCAGGATGAGGTGGACAACCACCCTCCATGCTCATTTTGTTCATGCTGTTCAGCTA CTTGGTGGTCATGAAAGAGCAACACCAAAGTCTGTGTTGGAGCTAATGAATGTGAAGGATCTAACCCTTGCACACGTCAA GAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACCGACAAAGGCATTACAGAAGGAGGTCATGGGCAGACAGATATTG GGTTGAGCCAAAGGCCAGGGATTGTTCCTCTGCATGGAGCATCATCAGCAGTACCCAATTTATTGCCTCAGAAGTCCCAC ATCAGAACATCGTGGCAATCATCATCAATAGAGACAAATACAAACAATAGCGGACAAAACTCCGAAATTGGTTTGACGTA TTCTCGTCTCATGAAAGGATCAAATGATACCATGGGGAATGAGCATAATTATGCTGGCATGTCAAATTGCATGAAGGAGG GTTTGGATTCTATCCCTTTGTCACGTTCAGAGACTATGATTGACTTAGAATTCACCCTTGGAAGGCCCACTTGGCAAACA GAGCATGCCGAACCATCAAGAAGAGAGTTAACTCTTCTCAAGTGTTAA
Protein sequence (LotjaGi5g1v0021900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSISNSHHPVMQTLFSPFSEPDLSLNISPPSISEAKASVGCKALYNNDMCSLSTSDSAGSSESELSHENNGFNNLCPPRE PTLRLGYGAVDLNPHYSVQGGGLRNFNHHHHHLQPRGHPVYGREFKRNARVVNGGKRSVRAPRMRWTTTLHAHFVHAVQL LGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGITEGGHGQTDIGLSQRPGIVPLHGASSAVPNLLPQKSH IRTSWQSSSIETNTNNSGQNSEIGLTYSRLMKGSNDTMGNEHNYAGMSNCMKEGLDSIPLSRSETMIDLEFTLGRPTWQT EHAEPSRRELTLLKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 13 | 333 | 321 | 2.2E-92 | – | |
PANTHER | 13 | 333 | 321 | 2.2E-92 | – | |
MobiDBLite | 53 | 73 | 21 | - | – | |
Gene3D | 138 | 199 | 62 | 1.0E-24 | – | |
SUPERFAMILY | 139 | 196 | 58 | 1.97E-15 | ||
TIGRFAM | 142 | 195 | 54 | 2.2E-23 | ||
Pfam | 143 | 194 | 52 | 1.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0021900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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