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LotjaGi5g1v0021900.1

Overview

Field Value
Gene ID LotjaGi5g1v0021900
Transcript ID LotjaGi5g1v0021900.1
Lotus japonicus genome version Gifu v1.2
Description Myb family transcription factor-like protein; TAIR: AT5G42630.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4; TrEMBL-Plants: tr|A0A151R6J5|A0A151R6J5_CAJCA Putative Myb family transcription factor family; Found in the gene: LotjaGi5g1v0021900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:3940482..3944590) extracted from Lotus japonicus Gifu genome v1.2.

CTCCTTTTCTATGACTGTGCATCGTACTTTGATGACTAATCTCTCAGCTTCCATAAATAACCACTACCCCTTTTCACTAA CTTTCAGTTCAAACCACCACCCCAGAAAAAAAATCTGATCTTTTCCTCTTTCCCTTCAATTTTTTATCTGACTAGTGACC AGTACTCTCTGCATCGAATTAATTCCCCTGCTTTAAAAATGGTGTTTTTTCAACCCTACTAAAAAGGCTATATCAGCTAG CTCCCCCCTCTCAAAACCAATGCAAATCATAAGTCACTCATGATATAATCACTACCTCAAATCCATCTCTTTCAGATCTT TCATTCATTCATTCTTCTCCTCAATTCAACTTTCACCCTTTAGCAATAGTTCTGTAACAAAACCTTTGATGTCTATCTCT AATTCACACCACCCAGTAATGCAAACCTTGTTCTCACCATTTTCAGAACCAGACCTCTCTTTGAACATAAGCCCTCCCTC TATTTCTGAAGCAAAAGCATCAGTTGGATGTAAAGCACTTTACAATAACGATATGTGTTCATTATCAACCTCTGATTCAG CTGGAAGTAGTGAAAGCGAGTTGAGCCATGAGAATAATGGCTTCAACAACCTCTGTCCTCCTCGTGAGCCCACATTGAGA TTGGGCTACGGAGCCGTGGATTTGAATCCCCACTATTCAGTTCAAGGAGGAGGCTTGAGAAACTTCAACCACCACCACCA TCACCTCCAACCTCGCGGCCACCCCGTCTATGGCCGGGAGTTCAAGCGCAATGCAAGGGTCGTTAATGGTGGTAAAAGAA GTGTTAGAGCTCCCAGGATGAGGTGGACAACCACCCTCCATGCTCATTTTGTTCATGCTGTTCAGCTACTTGGTGGTCAT GAAAGTAAGTTGATGATTTAACATTTAATCATCAAGCTAACTGCAAAGTACAAGCTATGCATGATTAGTTTCATAGTTCT TTCATTATTCTTTTCCAAAACAAAAAAAAAAAGATGGTTTCATTTATACTTTTGATGCATTCATATTTCACACCTACTTT TAATACGCTAGAATCATGTTCTTTATCTTCACAAACAATTTTTAAATTTACTCAGAAGCTTGTTCTCCCCCACAATTGAT TATTGTTTTGAAAGATTTCTAAACACGCACTTACTCTTTCATCTCATCAATTTTACTAATTTTATCCTCTTATATATTTT CATAATATTATATCACAAATCATATTTCACTTCTACTCTTATTCTTTTTGGGTGTTAAGTTGAATTGAGGTGTGAATGTA ATATTTTGCATTTTTTTATTTTATTATTCTATATAAAATGTGAAATTGATAAAACTAGGTTATGTCTAATTTTGGATGAT GATGTTGGTCAATTGCAGGAGCAACACCAAAGTCTGTGTTGGAGCTAATGAATGTGAAGGATCTAACCCTTGCACACGTC AAGAGTCACTTGCAGGTGGGGTTACTGTTCTCTCACATATTCTCCATTCTCCATTCACCATAGTCTTTCAGATCAATGAG TACTGAATTAAGTTCTTGTAGTTTTTCCCTTTTATTCTCTGAATAGAAAGAAAAGAAAACTATATTTAGCTGTTTCAAGT TATTGCATCTAGTAGTGGGGGAGGTAGAACAAGCACTAAGGACAAAAGGTATCTAGATGGGGTAATCTTAAAACTGCAAG AAAATCGTCAAATAGCTTCAAAGCATTCAAGGCAAAAGCCAATGCTACAACCAATTTAGCGTTAGCGTCCGGACCGTCAT TAAAATACTCAAAACTAAAATGTAGCGTTGTTGGTTTAGCTGACTCTAAGTTGACACAACTTACTTGTGGACTTTTCTTC TTCAGATTTTTATGTTATGTCTTAATGTCTGGGGTGTTCATAATGCAGATGTATAGAACAGTGAAGAGCACCGACAAAGG CATTACAGAAGGAGGTAATATATTTCTTCTTCCCATGGACCCAATTTTCATTTCTTGTATTATTAGTTATTCTCTTTGTT TGTGATATTTGGTTCTTAGTTTTAAGTCCTCATGTGAATTATTTAAGGTGGTGTCTAATAATACAAGAACAATGGCTCTG TTGATGATGAAATTTGCAGGTCATGGGCAGACAGATATTGGGTTGAGCCAAAGGCCAGGGATTGTTCCTCTGCATGGAGC ATCATCAGCAGTACCCAATTTATTGCCTCAGAAGTCCCACATCAGGTGAGAGATTGCATTAATTCATCAACCTTTTCTAC TTATCTTCTTTCTTTTTGTCTATCTCATTTTTTTTTCACAGAAGATAAAATTTCATTATATATATCATATATGTGACAAT TAATATTTTTTTAGATGGAAAATGAGACCATTTTAATAATTTTCTATCGTACATGCACGAATATTCACAAATGCCTCGTG TTTGGACTTTTTTTCTCTCCCTTTTCTTGCCAATTTTTCCTGTTTGTCTTTACCTATTTTATTACGGGGTTCCATAACTA GAAGTCTACTTACATATAGAATTTGACAAACTCAACCTAGTGTTTGTAGAGGTATATATGTATGGGGTGTCATTTTTAAC GTGCGCCCTTGATGATTCTTTCGGACTAACTCATCCACTAATATTGTCAATATGTCTTGATCCCAACATGTAGCAAAATG TCTAGCAATTGTTGCAAATCTCAATGTCTTGTAGTATGGACTAATATTAGTTTTTAAAGTTATTTTCGCACAATTAGTAA ACTTTTAAACGGGTGGCATCTTTTAAAAAAAAAATTATATGTAAGGAGTTCTTTTATTTTTCTTAGATTTAGAAATATGG AGAAAGAAAATGGAGTGAGAGAAATATAAAGTGCATGAAATAGAGAAATGAATGCAAATTAGCCAAAATTCTAAATGATG TAGAAATATATGTGTGTGATTAGATTCATATTTAAATTGATCGAAGTCTAGATTTTGTTTTGAATTTGGAATATTTTTGC TTACCACTGTTGAGTGCTAAAATGGGCTAACCAATATTAGTTTCCTTAAAACATGTTTACCTTTATACTAATATATCATC TCACTATACAATATTCATCAGAACATCGTGGCAATCATCATCAATAGAGACAAATACAAACAATAGCGGACAAAACTCCG AAATTGGTTTGACGTATTCTCGTCTCATGAAAGGATCAAATGATACCATGGTAAGAACTTGATCTCTTTCACTGTAGTTT TTGTTGCATGTACTATATGTTTTCTGAATGGTTTGCAATAATATTCAAACAGGGGAATGAGCATAATTATGCTGGCATGT CAAATTGCATGAAGGAGGGTTTGGATTCTATCCCTTTGTCACGTTCAGAGACTATGATTGACTTAGAATTCACCCTTGGA AGGCCCACTTGGCAAACAGAGCATGCCGAACCATCAAGAAGAGAGTTAACTCTTCTCAAGTGTTAAATAACCCTTTCCAA CAAATTCTGACACAGTTGGTAGATAGCGAGGTCCCTAAAACATGCCGACAAGATTTCAAATTTTAGCTGTGTGTATATGG AAAAATATTAGTCGAGAGAGGCAAAACTCACTTTGTTAATCTTGACGCTCTCGAAGAGATTAGTTTCGAACTATTGACAC ACCTAACCCTTTCCTTGTCATTAAAATGCTATACTACTACATGACATGGAGGAAAGAGAGAGGAATTATTCCATGTGAAT GATTTTATTTCGTGAAACATTTTGTCTAGAAAGAGGAAGGAGGAATAGGATAAATGTTTGCTATAAAACATATGCTTGAG TCCAAAGAACTTGAGGCATTGTCTTTGATGTCTTTTTCAATGTAAGGGATAACATTAAAAGAAAATAGAATGCCCCTTTC AGGGCATGGACCATGGCTTATATATTAGTTAGGCACACCACAGGACTCATTTGGAAGCTGATATTGGCCGGACAATGTGG GTCAAGTTTTTATGCCAGACTATCATCACATCGTTCTCATCATACCTGTACCCAAGACCAAGAGAATTATATATAGGGTG TTTGCTGTGGTACCTTAATTTAAATGAGGGTACAATACCTTAAATGATGTAAAACCTCTTTATTTCTAATTTTTTTTAAC TTATAAAAGCCTCTAGCGCCATTATTCAC 

CDS sequence (LotjaGi5g1v0021900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTATCTCTAATTCACACCACCCAGTAATGCAAACCTTGTTCTCACCATTTTCAGAACCAGACCTCTCTTTGAACAT AAGCCCTCCCTCTATTTCTGAAGCAAAAGCATCAGTTGGATGTAAAGCACTTTACAATAACGATATGTGTTCATTATCAA CCTCTGATTCAGCTGGAAGTAGTGAAAGCGAGTTGAGCCATGAGAATAATGGCTTCAACAACCTCTGTCCTCCTCGTGAG CCCACATTGAGATTGGGCTACGGAGCCGTGGATTTGAATCCCCACTATTCAGTTCAAGGAGGAGGCTTGAGAAACTTCAA CCACCACCACCATCACCTCCAACCTCGCGGCCACCCCGTCTATGGCCGGGAGTTCAAGCGCAATGCAAGGGTCGTTAATG GTGGTAAAAGAAGTGTTAGAGCTCCCAGGATGAGGTGGACAACCACCCTCCATGCTCATTTTGTTCATGCTGTTCAGCTA CTTGGTGGTCATGAAAGAGCAACACCAAAGTCTGTGTTGGAGCTAATGAATGTGAAGGATCTAACCCTTGCACACGTCAA GAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACCGACAAAGGCATTACAGAAGGAGGTCATGGGCAGACAGATATTG GGTTGAGCCAAAGGCCAGGGATTGTTCCTCTGCATGGAGCATCATCAGCAGTACCCAATTTATTGCCTCAGAAGTCCCAC ATCAGAACATCGTGGCAATCATCATCAATAGAGACAAATACAAACAATAGCGGACAAAACTCCGAAATTGGTTTGACGTA TTCTCGTCTCATGAAAGGATCAAATGATACCATGGGGAATGAGCATAATTATGCTGGCATGTCAAATTGCATGAAGGAGG GTTTGGATTCTATCCCTTTGTCACGTTCAGAGACTATGATTGACTTAGAATTCACCCTTGGAAGGCCCACTTGGCAAACA GAGCATGCCGAACCATCAAGAAGAGAGTTAACTCTTCTCAAGTGTTAA 

Protein sequence (LotjaGi5g1v0021900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSISNSHHPVMQTLFSPFSEPDLSLNISPPSISEAKASVGCKALYNNDMCSLSTSDSAGSSESELSHENNGFNNLCPPRE PTLRLGYGAVDLNPHYSVQGGGLRNFNHHHHHLQPRGHPVYGREFKRNARVVNGGKRSVRAPRMRWTTTLHAHFVHAVQL LGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGITEGGHGQTDIGLSQRPGIVPLHGASSAVPNLLPQKSH IRTSWQSSSIETNTNNSGQNSEIGLTYSRLMKGSNDTMGNEHNYAGMSNCMKEGLDSIPLSRSETMIDLEFTLGRPTWQT EHAEPSRRELTLLKC 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 13 333 321 2.2E-92
PANTHER 13 333 321 2.2E-92
MobiDBLite 53 73 21 -
Gene3D 138 199 62 1.0E-24
SUPERFAMILY 139 196 58 1.97E-15
TIGRFAM 142 195 54 2.2E-23
Pfam 143 194 52 1.0E-5

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0021900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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