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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0022000 |
| Transcript ID | LotjaGi5g1v0022000.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G62670.1 rna processing factor 2; Swiss-Prot: sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial; TrEMBL-Plants: tr|A0A1J7GLU8|A0A1J7GLU8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0022000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3967354..3973376) extracted from Lotus japonicus Gifu genome v1.2.
CACCAGACCTCATCAACGCGCACCACCACGCCGGCCGCCGCTCCACCACGCCGGTCGCCGCTCCACCACCGATCAGTCCA GCCGTCCCTCTCTCTGGCTCTGCGGTTCTATAGACTACAGGTATTACTGATTTCCTTTCTCTTTCTCTTGTCCTAACCCT AAATGGCAAAATTGATTTCCTTTCTCAAGCTTGATTTGATTTCCCTAAATTGATTTCCTCAAATCATTCAAATTATGCAA ACTCTCAGCTTGGTTTTGTCTCAAACTCTCTCTCTCTGATGTGCTGTCTGTCAATTAGATGATTGCAGATTTGCAGGGTG GGAATATATGTGTTAGTGATGGGTTGCTAGAAAATGCTCTCTGCATTCTTGTTTTGGTTTCTCTATTTTAGTGGGGCTGT CATGAGTTGAGGGGGATGAAAATCTGATTGAGTTAGTTTAGCTTTAGTTTTTTTTTAAGACCAAAATGCATCAGTTCAGC CTATAGCCATAACCAAAGGTCCAGGACCAGCTTTTACATGTTTCAAGTGAATTGATAAATGTGATGCAAGTTGAATGCAA TAGAAGACCATTCTTATTCATTAAATTCCATCATATGTACGCAGATCAGTTTTCTCACTGAGTTGGGTGCTTAGATTCTT TTCTCCCAATTACCCCCTGAACTAGTAGTTCTTTGTTTTATGAGTGAGTCTTCTTTTTCACATGTTATATGTAACAAGGC ATGCAATCCCCAAACTTCCTCGCATTCTTATGCCGTCCTCTTCCTTCCTTCCATATGCTCAACAGACCAGGCACCGTCTT CATTCAAACTCCTCATTGCCACCGCAAATTTCATACTATTGATGATGCTGTGGCTTTGTTTCGTCGCATGCTCCATATGC ATCCCCCACCATCGGTTGTGGAATTCACCAAAATCCTAGGAGCAATTGTAAATATGAAAGACTATGCCATACCTATCTAT CTTTATACTCAAATGGAATCTAGGGGCATCCTGCCATATACAGTTACTTTAAACATCTTGATGAATTGTTACTGCCATCT GGGTCAGCTGGGTTTTGCTTTCTCTGTACTGGCTAAGATTCTTAAGTTGGGTTACCAACCAAGTGTTGTATCTTTGACTA CACTAATCAAGGGCTTGTGCATTACTGGTAAGGTGTTGGATGCATGTACAATTCATGACAATATAGTCGCAAAAGGGTTC CGCTCAGATCAAGTTATGTATGGAACCTTAATGAGTGGTCTGTGTAAGAGTAAAGGATCAGGAAATGCCATTCAAACACT TCAAGAATTGGAGGCCTTACAATTGGTTAAGCCGAATCTTGTAATCTACAATACAGTCATTCATGGTTTGTGCAAAGATG GACTTGTAAACAAGGCACAGAAATTGTGTTCTGAAATGATTCAACGCGGAATTTTCCCTGATGTTGTCACTTTTAGTTCG TTAATTTATGGCTTCTGTCATGCAGATCAGTGGAAAGAGGTCAGGTTATTGCTAAATGAGAATAGTCTAGATGTTTGTTC CTTCAACATAATAATGGATGCATTATGCAAACAAGGGCTGCTCTTAGAAGCCCATGCTGTTTGTTATGAGATGATTAAAA GAGGTGTTCAGCCTGATGTTATTTCTTATACTATTTTAATGGATGGCTATTGTTTAAAATGTAAAGTGGACAAGGCAAGA AAATTATTTGATATGATGATTGAAGCGGGTTTGGTGCCTGATGTTTGGAGTTATAACATCCTCATTCAAGGCTACTGCAA GATTGAAAGAGTCGATGAAGCTATGAATCTATGTGAAGATATGCTCACTAAGAATTTAGTTCCAAACGCTGTCACCTACA AATATCTGTTTGATGGCTTGTGCAGATTTGGGAGACTCCCTGATGCATGGAACTTTCTTACTCGAATGCATTATCGTGGC CATCGACCCCCTGATCTTACCCCTTACAATATCATATTAGAAACTTTATGCGAACAGCATCTGGATAAGGCAAACAAAAT TTTTAATTCCCTCATCCCTGAACCTAATGTTCAGAGTTACAACATCTTGATTAGTGGTTATTGCAAGAATGGAAGAGTAG ATGAAGCTATGAGTATTTATCAAAATATGTGTTTGAGGAATATAGTTCGAGATAGTGAGACCTTCAAGTTGTTGATAAAT GCTTTCTGCAAACGGAAGCAATGTGACAAGGCAATTGCATTATATAAAAATAATCGTGACTTGTGCCCATTCAAAATACT TATGGATGGCTTGCGCAAAAATGGAATGGAGGAGGTAGCACAGAGGGTTTCCCAGCTTTATGGAGCCTGTGATCCAGATG TGGCATTAGTTCGGAATCAATTAGCTCTCTAAAGATGATTTGGCAGAATCCAGAATGACCTTGCGTTGCTCTGTGAAGAT AATTTCACCATTTTCTCGTCCTCCCTGTTTTCTCCCACCACGTCCCTCCATCCAATTTGAAGTTCAGGTGATATTTATTG CTCACTTGAAGCTTAAAGTATATACAGCTGTTATTATAAATTTCACTTGCCTTCTATTACAATTGCTATTTGCTATCAAG TTTTCTTAGACTTGAATTTAACTTCACGCCCATGTTTCACCTTGGTAGTTGCTATTTCACTTTTCCTACATCATTTGTAT TTTATATGTATGTATATTCTGGTAAAATAAAGAAGTTAAAAGGAGCAGCAATATTTCAACTTCACATCTAATGGCAGGAG GTAAATAATACCGTGGGGCCAACAGCTCAAAGAGGAGTTGCTCTGTTATTTTCTGCTCCTGCGCTTGCATTTTCAAGGTG GTGTCAAAGGAAACCACAAGAACTTCCCCTGATTTGCTGGTGAGCCTTGTCAAATTTTTACTTTGTTTGAACTCGGTATT TAGATGGAATTTGATTTTCTTACATCTATTTCCAGGTGATAAGGGTCTTAAGAGGTTCAACCTGATGTTATTTCACTATT TTAATGAATGGATATTGTTTAAAAAGTAAAGTGGATGAGGCAAGAAAATTATTTGATAAGGGAAACTGGAATGCCAAAGG CTGCACAGTTGCTGGGTCATCTCCATTTTTTCCTCCTCCCCCTTTTTTCCCTCATCGCTTCCCTCCATCTAATCTGAACT CCAGGTAATATTTATGAGAAATAATTTTTAGTACGGAAAAAAAATGTTAATAATTATGTAAACCTTTGTTTTTTTTCCTT TCAAAATTTGCAACTTTTAATCAATTTAGCTTTCCATTTTTTTGTCTGTCTAATGCAATTCTTGTGATTCTTCTAAAATC CCTTCGTCATATATAGCACTCCTCAATATTTATTGGTCACTTGAAGCTTAAAGTTTATACGACAATTTCTTAAAAGCTTC ACTTGCCTTCTACTACAATTCCTATTTGTTGTCAACGTTATTTTCTAGTCTGGACTATGGATTTTAACTGAAAGCACATG TTGAGCTTTTTTGTTGAATAATGGATGTGGCTTATATTGGCTACCATATTCCATGTTTTTCTTTTTCTAATTTCTTTTAT TAAGTGGCTTTCATTTAGTTGTCAGGATCTGAATATGGTGCTTTCACTCAACATTTTAGGTGTACAGTCCTCTGCTAGAA AGTTGTTGATTTTCTTGCTGAGTTTTGAAGGCTAAATTCTTTATTGACCCATTTGGAATACGAAAGTAAAGTCATGGATC AGTTATATCATTGGTTCAGGATCTGCTTTTCCTACGTGGTGTACATTATTTTATATGTATACAATTTAATATCTAATGGT AGGAGGTAAATAATACAACTGCGCCAACTACTCAAAGAGGAGCTTCTCTATTACTTGCTTCGCATGCACTTGCATTTTCA AGGTGGCGTCGTCAAAGGAAACCACAGGAATTTTCCTCTGATGTGCTGGTGAGCCTCGCCAAATAGCTACATCGTTTGAA CTTGGTAATTAGTTGGGTTTTGATTTCCTGACATCTATTTCCAGGTGATAAGGATCCTGAAGTAACATCCTGGTGAAGCT TAAGAGGTTCTTGCCATGAGAACTGCAAGTTTCAACAGATACCTTAAGCAATAAGAATATTCTTGGAAAGGGAGGGTACA AAAGGTGCTTTGCAGAAGGTTCATTGGTACTATAATGGAAATGTTGCCCCATGCTCAAGAGGTAGATCTTTTGCAATTTT CTCCCTTTTGTCGTAGGGAAGACCCATAGCCCTGTAAACAACATAACAATCATGTTTATAGCACCTAGTCTGATTCTTTG CTGTGGAATGACATTAATTTGGGTTTTTAAGGAGATGCATACCAGTTTATGTGTAGGTTAGGAAACTCGTTCGAAAATCA TGGTGGATATAAGCAACTTCCCTTAGGTTTTGCTCTTGTCCACGATAATTTTGTCCACCGCGAGTTTTCAAACATGCACA TATCTCACTTTTTTGGCTTCTCACTTTTTCTCCTTATTTTGCACCCGTTGTTGCTCCACTCAGTTGTTTATAGCCCACTA ATATCAGTGTTTCATTATTAGGGGTGTGCAAAACCCACTTATGAACGACAACCAAATCTTGAACCGAGCCAAATCAAACC ATAACATAACCAAACTGGTAAAACATTTTTATACCTGAATATATTTTTGTTAAAATTTAGTTCAGTAATTCAAACTGCAT ATAACCAATTCAGTGAACTGCGTTATGCGTATACCCAAATTTCAAAACACAGAATCAAAATTTATATATAGGAGCCCCAA ATCAGTACATTTCTTCCCGAAAGAAGTCATTGGAAGATATGATACACTTTTATCTTAGATGTCAGGAAATTATATGATTC TACCAAAATGTCATCTTGTGTCACAACTCACAACCATTTAAATTTGGCATGACTATGGCTATAGCTTTTGAAAATTTATA GTAGTGTCTTCCAGAAACATGTAGTGAATGAGCTTCAAATTTATAGATATTTCCTTCATTGTAACTTTCTATTTTACTTT TAATGAGATAAAAAGGCTGTCGTGGATAAATATCTATTGCAACAAATCAACCATTTTAAATCTTGCTGCCACTGGTTTTA AGATCCTCTGAGGTGCATGGTGCCATTTAAAAAGCAAAATGCAGCATTGATAACCATCGATTTAAAATGCAGGGTCTGTA GGATTGTGTTGGGGATCGTTTCAGTGCAGCATTGCTTGCGGTTTAGAGGCTTGGATACGGAAGGTTTGTGTCCTCTCTGT GATTGTGAAGCTGAAACTATTGATCATGCTTTTTTGTCATGCAATCATGTTCAGATGCTTTTGATTGGATCTCTACTTGG CTTACGGTACATGTCTTATTCTGCCACCTCTTTTATGCTTACTTACTGCATTTCATGGCAGATGCGGATGATGATGTTGC TTTATTCTTCAGTTTACTATATTGCATCTAGGAGCATTGAAACAATGTCATTTTTAAGGAGTTGCAGCTTGATGAGTCGC CGTCTCTTCAACGATCTTCACGCTGCATGCTCTTCCTGATTTATGTTTTGTTTCGTCCATGGCTGCCCCTTTGACGGTTA CATGGCAGCAAACCAGCAACCTTCGGGTGGGAAAATCAAAATTAATTTGATGTGTCAGTTGTTGAGCATTTGGATGTGGG GTTTGGTCTCCTTGCTGGTGATCATGAGGGTGAGGTTCTCGCTGCAACTAGCGCTTTCCCCCTCTCGGTGTTGCCTCCTT TGATAGCGGAGGCGTTTTGTTGGGCTCTTTCTTCAGATATGACTTCATGTTTTGGATCATTTTGCTTTGAGATAGGCTAT TTACAGCTCTATGAGACTTGGATGAAGACTTAGCCCGGGTCTTCGTATGTTTGCACTTTAGTGAATGATTGTCGTTTACT TGCTTGTTATTTTGATTTTATTGAACCCTCTTTTGTTTGTACAAGCAGCAATAGTTCTGAGGTTTTTTTTTTTGTGTGGC TGATAAGACATTTGCTTTTCAGAACTTGGTTTGGATCGAGGAGGTCCGCCTTCATCCTCTTACTAGGCATGATGTATTAG CCTCTAAACGTGTTTCTCCGATT
CDS sequence (LotjaGi5g1v0022000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGGAACCTTAATGAGTGGTCTGTGTAAGAGTAAAGGATCAGGAAATGCCATTCAAACACTTCAAGAATTGGAGGC CTTACAATTGGTTAAGCCGAATCTTGTAATCTACAATACAGTCATTCATGGTTTGTGCAAAGATGGACTTGTAAACAAGG CACAGAAATTGTGTTCTGAAATGATTCAACGCGGAATTTTCCCTGATGTTGTCACTTTTAGTTCGTTAATTTATGGCTTC TGTCATGCAGATCAGTGGAAAGAGGTCAGGTTATTGCTAAATGAGAATAGTCTAGATGTTTGTTCCTTCAACATAATAAT GGATGCATTATGCAAACAAGGGCTGCTCTTAGAAGCCCATGCTGTTTGTTATGAGATGATTAAAAGAGGTGTTCAGCCTG ATGTTATTTCTTATACTATTTTAATGGATGGCTATTGTTTAAAATGTAAAGTGGACAAGGCAAGAAAATTATTTGATATG ATGATTGAAGCGGGTTTGGTGCCTGATGTTTGGAGTTATAACATCCTCATTCAAGGCTACTGCAAGATTGAAAGAGTCGA TGAAGCTATGAATCTATGTGAAGATATGCTCACTAAGAATTTAGTTCCAAACGCTGTCACCTACAAATATCTGTTTGATG GCTTGTGCAGATTTGGGAGACTCCCTGATGCATGGAACTTTCTTACTCGAATGCATTATCGTGGCCATCGACCCCCTGAT CTTACCCCTTACAATATCATATTAGAAACTTTATGCGAACAGCATCTGGATAAGGCAAACAAAATTTTTAATTCCCTCAT CCCTGAACCTAATGTTCAGAGTTACAACATCTTGATTAGTGGTTATTGCAAGAATGGAAGAGTAGATGAAGCTATGAGTA TTTATCAAAATATGTGTTTGAGGAATATAGTTCGAGATAGTGAGACCTTCAAGTTGTTGATAAATGCTTTCTGCAAACGG AAGCAATGTGACAAGGCAATTGCATTATATAAAAATAATCGTGACTTGTGCCCATTCAAAATACTTATGGATGGCTTGCG CAAAAATGGAATGGAGGAGGTAGCACAGAGGGTTTCCCAGCTTTATGGAGCCTGTGATCCAGATGTGGCATTAGTTCGGA ATCAATTAGCTCTCTAA
Protein sequence (LotjaGi5g1v0022000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYGTLMSGLCKSKGSGNAIQTLQELEALQLVKPNLVIYNTVIHGLCKDGLVNKAQKLCSEMIQRGIFPDVVTFSSLIYGF CHADQWKEVRLLLNENSLDVCSFNIIMDALCKQGLLLEAHAVCYEMIKRGVQPDVISYTILMDGYCLKCKVDKARKLFDM MIEAGLVPDVWSYNILIQGYCKIERVDEAMNLCEDMLTKNLVPNAVTYKYLFDGLCRFGRLPDAWNFLTRMHYRGHRPPD LTPYNIILETLCEQHLDKANKIFNSLIPEPNVQSYNILISGYCKNGRVDEAMSIYQNMCLRNIVRDSETFKLLINAFCKR KQCDKAIALYKNNRDLCPFKILMDGLRKNGMEEVAQRVSQLYGACDPDVALVRNQLAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 88 | 88 | 3.8E-78 | – | |
| Gene3D | 1 | 96 | 96 | 1.1E-23 | ||
| ProSiteProfiles | 1 | 32 | 32 | 6.807 | ||
| Pfam | 33 | 82 | 50 | 8.1E-18 | ||
| ProSiteProfiles | 34 | 68 | 35 | 12.529 | ||
| TIGRFAM | 36 | 70 | 35 | 1.6E-8 | ||
| ProSiteProfiles | 69 | 95 | 27 | 6.336 | ||
| Gene3D | 97 | 163 | 67 | 2.0E-18 | ||
| PANTHER | 98 | 236 | 139 | 3.8E-78 | – | |
| ProSiteProfiles | 99 | 133 | 35 | 11.696 | ||
| Pfam | 99 | 146 | 48 | 5.6E-15 | ||
| TIGRFAM | 102 | 135 | 34 | 1.2E-8 | ||
| ProSiteProfiles | 134 | 168 | 35 | 12.54 | ||
| TIGRFAM | 136 | 170 | 35 | 7.4E-11 | ||
| SUPERFAMILY | 138 | 339 | 202 | 4.71E-7 | – | |
| Gene3D | 164 | 254 | 91 | 8.3E-25 | ||
| Pfam | 168 | 217 | 50 | 5.2E-17 | ||
| ProSiteProfiles | 169 | 203 | 35 | 12.627 | ||
| TIGRFAM | 172 | 205 | 34 | 1.4E-8 | ||
| ProSiteProfiles | 204 | 238 | 35 | 11.049 | ||
| PANTHER | 238 | 358 | 121 | 3.8E-78 | – | |
| Gene3D | 255 | 366 | 112 | 1.5E-24 | ||
| Pfam | 270 | 319 | 50 | 4.2E-15 | ||
| ProSiteProfiles | 271 | 305 | 35 | 12.529 | ||
| TIGRFAM | 274 | 306 | 33 | 5.3E-11 | ||
| ProSiteProfiles | 306 | 336 | 31 | 7.75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0022000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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