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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0022400 |
| Transcript ID | LotjaGi5g1v0022400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G26922.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9LJF8|FBL47_ARATH F-box/LRR-repeat protein At3g26922; TrEMBL-Plants: tr|G7IXZ7|G7IXZ7_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi5g1v0022400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3996838..3999719) extracted from Lotus japonicus Gifu genome v1.2.
AACGAGATGAAAAGGTGTAGGGAACGTTACAATAATATACCAAAGTTTCTGCCAAAACGGGTAACGTTGTATTTTCCGCC ATAAGTCCGTACGAATTACAACAACGAATGACCATTCAAACCTTGTTTAGGTGCAATACATGTGAAATTCAAAAGTCAGT TATTATATTATGTACCCCATTACGTAATATAGGGTTTTAAATTGCGATTGCCGCTGCATTGCCGAATCGTGATCAAATGC TGGTTGATGTGACCACAATCGCAATCCTGATGCGGATGCAGTGAATCCAAAATCCATTATGTTGCGGCCGCAATTGCGGT TGCGGACTGCACTTTGAGAAGCTTACCTTGTGAGTTGTGACTTGTCTGGTTGATAATTACATTTCTTACCCCTTTTTGTG TAGGTACAACAACTCTTATGGCTGGTTTAAACTCATCATCTGATTCACATAAGCTCCAAAGACACAATATGGGTAACAGG AAAGATATGATCAGTAACTTACCTGATTATCTTCTTCATGACATTCTTTCTTTACTCCCAACCAGAGATGCAGTGGCGAC TTCCGTTTTATCAAAAAGGTGGAAGTACTTATGGACTGACTTATCTGTCTTTAATTTTGAAAATGATCTGCCAATAGTCA GCATGGAAGAAGACCAAGTATATTGCCTTTTAGATCAAGTGCACAGACTACTTCATCATTCTAATTATGTAAAAAGTCTC GGTGTCATGTCTTTTGGGGTTGCCATTGATGAGGATAGAGTTAATTCTCTTATATCTGCTGTAGTGAAGCACCAAATCGA AGAGCTTAAGCTTTCCCTACTTGTAAATCAGTTTGTGTTACCCAATTGTTTCTCGGCCTTTGAATCATTGACTGAGCTGC ATTTAGAACTGGGTTGTGTTCTAGATGTTCCTAGTGGCATTCGTTTCCCTAGCCTGAAGACATTCAAGCTTTCACGTGTT ACCTTTGCAAATGACAAGTCAGTTCAACAACTTTTCTCTGGGTGCCTTGTCCTACAAGAGTTAACCTTGTTTAACTGTAA TTGGAGTAAAATCGAGCAGACTAGCATAACAACTCCCGCATTAAAGATATTAACCATATTTTCGGACCTTCGAGTAAATA TGATGCGTTCTACAGTCAGGATTGATGCTGTGAATCTTTTATATTTCAGTTGCACGGGCTATACACTAGTAAATTTTCTC CTTGTTAACACGGCCTCCATAGTTGATGCACATGTTGAATGTTGAACCAATACGAAAACAAATCAAGTTAAATGAAAAGC TAAGACCTTAATATAGGAGAATCAAATTCCTTGTCAAATGGACCAACAGACAATTGCAAACACTGAAACTAAGTTAAACA GCTTCTAGGCACAAATGGTAATGTATTCTTCAAACAACAACCTCCCCCCCCTTCTTCATTCCTTCAATCATATTCAGCAA TCACCCAAAGAAAATTCATTTGACATCTGAATTACTCTTTCCTTCAATCATACAATGACAATGATCAGTGCTAACAAGAA GTATGAATCACAAAATCAAAAAAAAAAGAAGTATGAATCACAATACACCCCAAGATCCCACAATTGATATAATGTCATAG ATACAGAACATACATTTTGATTCCAAAATAATCCCAGACAAAAACCCCAGGTCAAGTTAGGCATAAGGAAAGCTTGGCAC ATAAAAAAACTAGCAAAAAAATACTTTCAAAATGGTACAGGCCATAAGAAAAAAAGTTTCTTCAAAGTCAATAACTCATT GATACAGCAGCAAGTTTAAAACTTTATTGAAACCCACAAGTTATAAGCACCATATAACTTATAAGAAACAAATGGTATTG AAAATGTTGAGTCTAGGAAGAAAAGAGGGTACCAGAAGAAGAGGAGGCAACGGAGCAAGTGAGAGAAAACTTGGGTTTTG GTTTGAAAGAAGGAGAAATCAAATTGAAGCCACTAGTAGTAGAGTGTGCAAACAAGGAGGAAGATTTCCATCCCAACCCA CAGCTGAAAACAAAGAAATTCACAGGTTATAACAATAATAACATTGAACTGAAAATTCATGAAAATGAGAGAGTTGTAAC CTGGTAACTGAAGTAGCCATGTGTAGAGATGGAACGAAGGTTCTTCTGGTGGTGCTATCAGGAGATTTTAGCCTTATCCT TGGCCTCAATTCAAACCTCACATTCGTCTTCTTCTTCCCCCTTCAACCATGTTCACAGTGGGGACTACTCTACCTTCACA GATATGGCAATATTAATCAAAGTACCATATTATCCCTGTCATAATTTTACTTTTCCACAAATACCCTTACCCCTAAACTC TATTTTTTTTGTAATAAGGAGGGCTTCAGCCCAAACTAGCCAACAAAGCCTCTAGGGAACAGGGTCACAGACATGTCATA GAATAGGTGGCTGGCATAGTCAGCAGGAGGGTGGTCCAACCAAGTCACTTCCGTGGAGCTTGAGTGTCCCAGGCTGGCCA AAGCGTTAGCTTCGCGATTTCCTTCACGCTAGGTGTGGATAATTCGAACTTGCCAGTCTCTTTTCAGGAGGTTCTGGATC AAGTTGACAATGGTTGCACAAGAGTGCTGAGGCGGGCAGTGGTGTAGAATTGTGGAGACAGCCACTAACGAGTTGCTTTC CACCCCTAAACTCTGCTCATCTTCTCCGACTCACAGGCTCTGGTCAGTTACGGGCCATAACTTATGGCATTGCGGTAAAT ACTAAACTTGTTTCCGATGAAGGACAAGCTCATTCAGTCCCACATGCCGCATGAATCCTACCTAGAATTAGTGTTTAAGT ACAAATTAGTGCATATAAATTAAATTCTTTCTTTTAATTGTACTTGATTTTTATATTTAAAGGAATATGTCTCTTACTTA TT
CDS sequence (LotjaGi5g1v0022400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGTTTAAACTCATCATCTGATTCACATAAGCTCCAAAGACACAATATGGGTAACAGGAAAGATATGATCAGTAA CTTACCTGATTATCTTCTTCATGACATTCTTTCTTTACTCCCAACCAGAGATGCAGTGGCGACTTCCGTTTTATCAAAAA GGTGGAAGTACTTATGGACTGACTTATCTGTCTTTAATTTTGAAAATGATCTGCCAATAGTCAGCATGGAAGAAGACCAA GTATATTGCCTTTTAGATCAAGTGCACAGACTACTTCATCATTCTAATTATGTAAAAAGTCTCGGTGTCATGTCTTTTGG GGTTGCCATTGATGAGGATAGAGTTAATTCTCTTATATCTGCTGTAGTGAAGCACCAAATCGAAGAGCTTAAGCTTTCCC TACTTGTAAATCAGTTTGTGTTACCCAATTGTTTCTCGGCCTTTGAATCATTGACTGAGCTGCATTTAGAACTGGGTTGT GTTCTAGATGTTCCTAGTGGCATTCGTTTCCCTAGCCTGAAGACATTCAAGCTTTCACGTGTTACCTTTGCAAATGACAA GTCAGTTCAACAACTTTTCTCTGGGTGCCTTGTCCTACAAGAGTTAACCTTGTTTAACTGTAATTGGAGTAAAATCGAGC AGACTAGCATAACAACTCCCGCATTAAAGATATTAACCATATTTTCGGACCTTCGAGTAAATATGATGCGTTCTACAGTC AGGATTGATGCTGTGAATCTTTTATATTTCAGTTGCACGGGCTATACACTAGTAAATTTTCTCCTTGTTAACACGGCCTC CATAGTTGATGCACATGTTGAATGTTGA
Protein sequence (LotjaGi5g1v0022400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGLNSSSDSHKLQRHNMGNRKDMISNLPDYLLHDILSLLPTRDAVATSVLSKRWKYLWTDLSVFNFENDLPIVSMEEDQ VYCLLDQVHRLLHHSNYVKSLGVMSFGVAIDEDRVNSLISAVVKHQIEELKLSLLVNQFVLPNCFSAFESLTELHLELGC VLDVPSGIRFPSLKTFKLSRVTFANDKSVQQLFSGCLVLQELTLFNCNWSKIEQTSITTPALKILTIFSDLRVNMMRSTV RIDAVNLLYFSCTGYTLVNFLLVNTASIVDAHVEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 273 | 258 | 3.2E-44 | – | |
| PANTHER | 16 | 273 | 258 | 3.2E-44 | – | |
| Gene3D | 21 | 256 | 236 | 3.1E-25 | ||
| SUPERFAMILY | 21 | 66 | 46 | 9.55E-12 | ||
| ProSiteProfiles | 22 | 68 | 47 | 10.001 | ||
| Pfam | 25 | 63 | 39 | 3.7E-8 | ||
| SMART | 28 | 68 | 41 | 7.7E-5 | ||
| SUPERFAMILY | 124 | 229 | 106 | 5.44E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0022400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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