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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0028400 |
| Transcript ID | LotjaGi5g1v0028400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-amylase; TAIR: AT4G25000.1 alpha-amylase-like protein; Swiss-Prot: sp|P17859|AMYA_VIGMU Alpha-amylase; TrEMBL-Plants: tr|A0A151S7Y0|A0A151S7Y0_CAJCA Alpha-amylase; Found in the gene: LotjaGi5g1v0028400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4702867..4704140) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGTCTCTCCCTTCACTTTGCTTCCTTTGCCTTTGCATTTCACTTTTCCCCTCTTTCTCCTCATCTGCCATACTATT TCAGGTATCACCACCATTCATGATTCAGTCTCAACCTTCCTTTGTCTTTAGACACATATGAAACTGTGATTTCTTATTTG GAAAATATGAGTTTACCATTGATCTGATACTCACTCTTGTGGGAGTTTTGAACCACCACAAAGTGAAAATAAAAAGTGTT TTCCACTTAAAAACTGTCGTAAAGTAAGTGTCCTCGGGTGCCTCCCACTATCAAGCGGTTCAAGTATCAGGGTTGTTTCG TATTATGCAAAATGCTAGTAAAATTTATTTAACACTCATTTATCGGTTGAAATTCATGTGGTGTCTACTAAAATATGAGG TTCACTTTAGTGAAACTCACATGAATTTCAATCGATCAATAAAAGACTTTTGAAAAGGAAGTGTCAAAGTGACTATTACT AGCACTCATCTTATTATAGTGAAGAGTTTAGTAAGATGAACATGAACATGTATGTGTGTTCTAGGGTTTCAACTGGGCAT CAAGGGAAAAGGCAGGAGGATGGTACAACTTCCTAAAGACCAAGGTCCCTGACATAGCAGATGCTGGAGTTGACTATGTT TGGCTTCCTCCTCCCTCTAACTCTCACAATGACGGTCCTCAAGGTAAACAACTTCTTGTGTCCTTGAATAAGTTTTAGTG CATGTTTAGATGTAAGATAAAAAACACACAAAATTACACTTCGAGTGAGGCTAAACTTAAAGAAAATTGCTTATATTGAG TCATAGACCCTGAAATTTAAGTTGTGGTACAATATTAACATAAAAATGTAACATATTTCTATTTTTTAAGTTGCTTATAT CTTAACATTTGTATTCTGTTGAAGGTTACTTGCCGAAGAGGCTATATGACCTGGACACATCAAAGTATGGCAACAAGGCG GAATTGAAGTCCCTAGTGGCTGCATTCCGTGAAAGAGGAGTGAAATCCATATCGGACATAGTCATAAACCACAGAACAGC AGAGAGGGTAGACAACAGAGGACTTAGCATCTTCGAAGGTGGTACTCCAGACAACCGTCTGGACTGGGATGTCTCCTACA TTTGCAGCACCGACACTCGTTTCAATGGTACAGGAAACCCCGACACAGGTGATGACTGGTGGGGTGCTCCTGACATCGAC CACACCAATCCCAAGGTGCCATGATGAACTAACTATCTCAAAAACTTAAGTTGCAGATTAAAACATGTGAATGA
CDS sequence (LotjaGi5g1v0028400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCTCTCCCTTCACTTTGCTTCCTTTGCCTTTGCATTTCACTTTTCCCCTCTTTCTCCTCATCTGCCATACTATT TCAGGGTTTCAACTGGGCATCAAGGGAAAAGGCAGGAGGATGGTACAACTTCCTAAAGACCAAGGTCCCTGACATAGCAG ATGCTGGAGTTGACTATGTTTGGCTTCCTCCTCCCTCTAACTCTCACAATGACGGTCCTCAAGGTTACTTGCCGAAGAGG CTATATGACCTGGACACATCAAAGTATGGCAACAAGGCGGAATTGAAGTCCCTAGTGGCTGCATTCCGTGAAAGAGGAGT GAAATCCATATCGGACATAGTCATAAACCACAGAACAGCAGAGAGGGTAGACAACAGAGGACTTAGCATCTTCGAAGGTG GTACTCCAGACAACCGTCTGGACTGGGATGTCTCCTACATTTGCAGCACCGACACTCGTTTCAATGGTACAGGAAACCCC GACACAGGTGATGACTGGTGGGGTGCTCCTGACATCGACCACACCAATCCCAAGGTGCCATGA
Protein sequence (LotjaGi5g1v0028400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSLPSLCFLCLCISLFPSFSSSAILFQGFNWASREKAGGWYNFLKTKVPDIADAGVDYVWLPPPSNSHNDGPQGYLPKR LYDLDTSKYGNKAELKSLVAAFRERGVKSISDIVINHRTAERVDNRGLSIFEGGTPDNRLDWDVSYICSTDTRFNGTGNP DTGDDWWGAPDIDHTNPKVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| PANTHER | 5 | 179 | 175 | 1.3E-71 | – | |
| PANTHER | 5 | 179 | 175 | 1.3E-71 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 18 | 23 | 6 | - | – | |
| Phobius | 24 | 180 | 157 | - | – | |
| Gene3D | 24 | 180 | 157 | 5.0E-54 | – | |
| SUPERFAMILY | 26 | 179 | 154 | 7.46E-32 | ||
| Pfam | 48 | 121 | 74 | 2.6E-8 | ||
| MobiDBLite | 153 | 180 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0028400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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