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LotjaGi5g1v0029900.1

Overview

Field Value
Gene ID LotjaGi5g1v0029900
Transcript ID LotjaGi5g1v0029900.1
Lotus japonicus genome version Gifu v1.2
Description WRKY transcription factor, putative; TAIR: AT4G24240.1 WRKY DNA-binding protein 7; Swiss-Prot: sp|Q9STX0|WRKY7_ARATH Probable WRKY transcription factor 7; TrEMBL-Plants: tr|A0A0B2QM44|A0A0B2QM44_GLYSO Putative WRKY transcription factor 7; Found in the gene: LotjaGi5g1v0029900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:4882092..4885685) extracted from Lotus japonicus Gifu genome v1.2.

CACCAACTCAACCCATTTGTACTCAACTCACTCTATCCCGTTATAAATGGACCCACCTAAAAGAAGGTCTATGCCCTAAG AAAATTTCCACGTGTCCAACACTCATTCGTTTTCAAGTTTGACCCTTTGGCATTGATGAGACATCCCTTTGACTACAACA ACACCCTTCCTTCAACTCTTCTTTCTCAATCCCTTTCTTTCCCTCTTTTTCTCCATTCCCCTGCATTAAAAAAAGCTTCA ACATTTCAATTTCAACCCCATGATTATTCCTTCTCCCCAACCGATCTCCAAGAAACCTCAAAAGGGTCATTCAGAAAGTA AAAAAAGATTGTAACTTGGTTCTTCTTTTGATCTTTCCTCCACCCTTTTCCTCTGTATCTGTTTATGGTACAGGAAGCAT GGCTATTGAGCTTATAACAGGTTATGGGGGTGATAGCTTTGAAGGTAGGAGCAGTGTCAGAGATAACAATGCAATTTCCG TGGAAGAAGCAGCTTCTGCTGGTATTCATAGCGTGGAGAAGCTCATGAATATGATTTCAGAACAGAAAAATCATGATCAA CCTCAACAAGAAGAACAGAGTAATGATAACAATGGTTCTGAACTTGGAACTGTTGTTGACATGGCTGTGAAGAGGTTCAG AGAGATGATTTCTCTCCTTGACAAGCCAAGAACTGGTCACGCTCGTTTCAGAAGAGCTCCTCCACCAACAGTACAATCTG TTCCTCTTCTTCAATTGCAGCAAACGGTGGAGGAAAATTCAAAACCCAAAACCCCTTTTTCTTCTTCTCTTGTGAAGCCA GAACAGGGGAAAACAGAGCAAGTCTCTGCTTTCAAGGCTTATTGCCGCACCCCACTTATACGCCACCCTCCTCCACCGCT GCAAAATCACCACCACCACCCTTTGCATCAACCTTTGCCACCGCCAGAGAAGAATGAAGCTCGTGGTTCTGTGAATTTTT CGGTTTCACCATCAGTTTCTGCTGCTAACTCGTATATCTCAACGTTAACAGGGGAGAGTGAAGGTTTTCAACGACCCTGT CGTTCTTCTGGGTTCCAGATTACTCATGTGTCCCTGCAAGGAAATTCTTATATGGGTAAACCGCCACTGTCTTCAAATTC TATGAAGAGGAAGTGCAATTCTATGGAATTTCCTGGTATCAAATGTGGATCTTCCTCTGCACAGTGTCATTGCTCCAAGA AAAGGTATGCTCCAATGCTATTACTATGCAATTTAGAGTGTGTTTGGATTAGTGTTTGTGAAAATTGAATTTAGTAAAAT TGATTAGAGTACAAGTGAGTTGAAAGTAAAGTGATTTTTGTTGAGTAATGTAAAATTTACTTTTAAATTTTAAAATTGAT TATGTTCAATGCAAAATCTACTAATTTTGGGTTTGAAACCAATTTTACTCTAGCCTATAATAATATATTCGCAGAATCAA TTCGAACACTAAAAAATTAATGTGACATATGCTACTCACCATAAATAATTTTAGCTTCATAGAAGTATTTCAAGCAATAC ACTATTTTTATTATAATTAATCTTGGTATTGTTGTCACTATTTGTTACATTACATTACATATGGCACATATATAATATAA GGTTTAAATGATGCAGGAAATTGAAGTTGAAGCGAGTGATAAGAGTGGCAGCTATTAGTTCTAAAACTGCTGATATCCCA CCTGATGAATATTCCTGGAGAAAATATGGACAGAAACCCATCAAGGGCTCTCCTCATCCTAGGTATATATGCTAATGTTG CAAGAACAATATACTATATTTTATAGTGCATGTTTGGGTACATGTTGAAAAATCAACTAAAATCATGATGGACAATTACA AAAGTTAAGAGAAATTGCATCTGTTCACTATGATTTCGGTTGAACGTATTTTTCCCTATGTATCTAACATTAAAACCGTG AGTCAGTAAAATCTTAACATTACAAAAATCATGTGAAATTATTAAATGAGAATATCTATGTTCACTGAAATGTGAATTTG TTATGGACAATGCAGAGGTTATTACAAGTGCACCAGCGTGAGAGGATGCCCTGCACGCAAACATGTGGAGCGCGCTGTAG ACGATTCCAACATGCTTGTGGTCACCTACGAAGGAGAACATAATCACTCGCACACAGCATCTGAGGTGGCTGCAAATGTT GGTGTTCCTAAATCATCGTCTTAGTACATGTTTGCAAATCTTTCAACTATTAATTCTGAAATCAAATTCAATTATGCAGA GAAACTTGTGTTGGTAGAAGTTTTTGGTATCAGAATTGATTTTGATGAATCAAATGCAGATTAATGTGCTAAAAGTATTG GTTGATCCCAATTACTGTTGATCCTTCAAAAGTTTTGTTCTTAGGCTTAATTGCACTTTTGGTCCCCCAACTATTGTCTT CCTGCGAAAATCGTCCCCAAACTTCAAAATTAGCAAAAAACGTCCTCCAACTATACACGTCGTTGCACTTTTGGTCTGCC GTTACCATTCCGTGAGAAAACGTGGATAAAAAAAATAATAAAAAACTTCATCATCTTCATACCTTCAAACCCAGAGAATT TCAGAAAAGACAAAAATCAAATCCAGATTCAAGAATCTCATTACAAACTAACAATTAAACAAGCATAAATTCTGAAATCT TAAAACACCCTCACATCTTCCATCTTCCTTCTTCTCCCTTTATTTTTCTTCCTCTTTTCAAATCAAATTTCCCAGGTCCA AAGACTCCAACTTTCCTAGATCCAAAGACTTTGAACTTCATACCTGAAATCACAACCAACAAGATCTCACCCCACCAGCG CAACGCCGTCCCCCACCTCCTCGGCGAAGTCGGCCCATCCATTGATCTGAACCTATACTGCTTCGATCTGCGACGGAGCA TGTAGATCTGCAAGCAACAACTTGTGCATCTTCAAATTCGCCTCTTTCTGTTTCCAAATCCTCGTCTTCAGTCTCTGTTT CGTCATCATACTGTTCAAATTCGCCACCGACCCCGTCTTCTTCTTTTTCTGCGAACTTCCGGCAACAACAGCAAGGGAGG TGGGTGAGGAAAGGTGAGGGAGCAAGAAGAGGATGTGGTGGAGAAGAGAGACGGGAAGAGGGATTTTTGAAGTGGGGGAA CATGGATTTGTAGATTTTTTTATAAAAAAAAATTATGGGTTTTGTTTTATGAAGATGAAGATTCTGGGTTTTATAAGATT TAATGATGAAGAAGTTTGAAAAAGATGAAGAACCAATCAATACTTGGGTTTTTGAATTTTTTATTTTATTTTCCAGCAAT CTGTTAAGTTTTGGATGTAAGTTGGACGGAAAACCAAAAGTGCAACGACATGTATAGTTGGAGGACGTTTTTTGCTAATT TTGAAGTTTGGGTACGATTTTCGCAGGAAGGTAATAGTTGGGGGACCAAAAGTGCAATTAAGCCTTGTTCTTACCAACCC CAACTTTCCCCATGTATTGCATATAGTAGTTCGTTTAGAATATATTCAATTAGCTATGTTATTATTCAATGCTCAAACTT AGTGTCAATGCTTATAGTTCAGATATATATTGGATGTCTTGTAGTATATATATATATGTGTCCTTTTCTTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0029900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTATTGAGCTTATAACAGGTTATGGGGGTGATAGCTTTGAAGGTAGGAGCAGTGTCAGAGATAACAATGCAATTTC CGTGGAAGAAGCAGCTTCTGCTGGTATTCATAGCGTGGAGAAGCTCATGAATATGATTTCAGAACAGAAAAATCATGATC AACCTCAACAAGAAGAACAGAGTAATGATAACAATGGTTCTGAACTTGGAACTGTTGTTGACATGGCTGTGAAGAGGTTC AGAGAGATGATTTCTCTCCTTGACAAGCCAAGAACTGGTCACGCTCGTTTCAGAAGAGCTCCTCCACCAACAGTACAATC TGTTCCTCTTCTTCAATTGCAGCAAACGGTGGAGGAAAATTCAAAACCCAAAACCCCTTTTTCTTCTTCTCTTGTGAAGC CAGAACAGGGGAAAACAGAGCAAGTCTCTGCTTTCAAGGCTTATTGCCGCACCCCACTTATACGCCACCCTCCTCCACCG CTGCAAAATCACCACCACCACCCTTTGCATCAACCTTTGCCACCGCCAGAGAAGAATGAAGCTCGTGGTTCTGTGAATTT TTCGGTTTCACCATCAGTTTCTGCTGCTAACTCGTATATCTCAACGTTAACAGGGGAGAGTGAAGGTTTTCAACGACCCT GTCGTTCTTCTGGGTTCCAGATTACTCATGTGTCCCTGCAAGGAAATTCTTATATGGGTAAACCGCCACTGTCTTCAAAT TCTATGAAGAGGAAGTGCAATTCTATGGAATTTCCTGGTATCAAATGTGGATCTTCCTCTGCACAGTGTCATTGCTCCAA GAAAAGGAAATTGAAGTTGAAGCGAGTGATAAGAGTGGCAGCTATTAGTTCTAAAACTGCTGATATCCCACCTGATGAAT ATTCCTGGAGAAAATATGGACAGAAACCCATCAAGGGCTCTCCTCATCCTAGAGGTTATTACAAGTGCACCAGCGTGAGA GGATGCCCTGCACGCAAACATGTGGAGCGCGCTGTAGACGATTCCAACATGCTTGTGGTCACCTACGAAGGAGAACATAA TCACTCGCACACAGCATCTGAGGTGGCTGCAAATGTTGGTGTTCCTAAATCATCGTCTTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0029900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAIELITGYGGDSFEGRSSVRDNNAISVEEAASAGIHSVEKLMNMISEQKNHDQPQQEEQSNDNNGSELGTVVDMAVKRF REMISLLDKPRTGHARFRRAPPPTVQSVPLLQLQQTVEENSKPKTPFSSSLVKPEQGKTEQVSAFKAYCRTPLIRHPPPP LQNHHHHPLHQPLPPPEKNEARGSVNFSVSPSVSAANSYISTLTGESEGFQRPCRSSGFQITHVSLQGNSYMGKPPLSSN SMKRKCNSMEFPGIKCGSSSAQCHCSKKRKLKLKRVIRVAAISSKTADIPPDEYSWRKYGQKPIKGSPHPRGYYKCTSVR GCPARKHVERAVDDSNMLVVTYEGEHNHSHTASEVAANVGVPKSSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31282:SF27
20 358 339 5.5E-107 –
PANTHER
PTHR31282
20 358 339 5.5E-107 –
MobiDBLite
mobidb-lite
49 69 21 - –
MobiDBLite
mobidb-lite
118 137 20 - –
MobiDBLite
mobidb-lite
154 184 31 - –
Pfam
PF10533
243 288 46 6.3E-15
IPR018872
Gene3D
G3DSA:2.20.25.80
274 352 79 3.1E-30
IPR036576
ProSiteProfiles
PS50811
285 351 67 30.676
IPR003657
SUPERFAMILY
SSF118290
286 350 65 4.58E-27
IPR036576
SMART
SM00774
290 350 61 1.8E-37
IPR003657
Pfam
PF03106
292 348 57 1.5E-26
IPR003657
MobiDBLite
mobidb-lite
345 366 22 - –
MobiDBLite
mobidb-lite
351 366 16 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0029900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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