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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0030800 |
| Transcript ID | LotjaGi5g1v0030800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G47056.1 VIER F-box protein 1; Swiss-Prot: sp|Q9C626|FB37_ARATH F-box protein At1g47056; TrEMBL-Plants: tr|Q2HTR2|Q2HTR2_MEDTR Cyclin-like F-box; Found in the gene: LotjaGi5g1v0030800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4928181..4929827) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGCCAGGCTTCTTCCACGGCCGCCGTCGCTTGCCGCCGCGAAAATTGTCAAGCAAACCGCTCCGGCAGCATCTCCAA GACCAGATCCACTGCCTCGGTATCTCCGATGCTCGCCGCCGAGGAAGACGCCGATGTTAACCGCGGTGGCCGGGCGGTGG TTGAAGGAAAAACAGATTACATCTCCGATCTCCCTGATGAGTGTTTGGCTGTGGTGTTTCAGTCGCTGAGCTCGGCTGAT CGGAACCGGTGCTCGCTCGTCTGCCGGCGGTGGCTTATGGTTGAGGGACAGAGCCGGCATCGTCTCTCGCTCAACGCGCA GATGGATCTGCTTCCGGTAATCACTTCTCTGTTCTCTCGATTTGATTCTGTGACGAAGCTTGCTCTGAAATGCGATCGCA GATCGGTTAGCATCCGCGACGACGCGCTTGCTATGATCTCTGAGAGGTGCCCTAATCTCACGCGCCTCAAGCTCCGCGCG TGCCGCGAGATCACTGACTCCGGGATGGAGGCCTTCGCGAAGAATTGTAAGGGTTTGAAGAAGCTCTCGTGCGGATCGTG CACGTTTGGATCTAAAGGGATGAACGCTGTGCTTGATAATTGTGCTTCCCTGGAGGAGCTATCGGTGAAGCGCCTCCGTG GAATCACCGAGACGGCGGAGCCGATTGGTGCTGGCGTTGCGGCGGGGTCGCTGAAGACGCTTTGCTTGAAGGAGCTTTAC AACGGGCAATGCTTCAGGTCGTTGATTCTCGGTGCCAAGAACTTGAGGACGCTGAAGCTTTTCCGGTGCTCTGGTGACTG GGATAGCCTCTTTCAGCTCGTTGCTGCGGAAAGGGCCACGAGCATGGTCGAGATTCACCTGGAGAGGCTCCAAATTGGCG ATGCTGGGTTGCGAGCTATCGTGAACTATTCGAGCTTGGAGATTTTGCATCTTGTGAAGACCCCTGAGTGCACGGATTCA GGGCTTGTTGCGGTTGCGGAGCGATGCAAGCTGTTGAGGAAGCTTCATATTGATGGGTGGAAGGCGAATCGAATTGGTGA TGAAGGGTTGATAGCGGTTGCCAAGTTCTGCCCTAATTTGCAGGAACTTGTGCTCATTGGGGTGAACCCCACTAAGGCTA GTTTGGAAATGTTGGCATCTAATTGCCAGAATCTAGAGCGGTTGGCTCTGTGTGGAAGCGATACAGTTGGTGATCCTGAA TTATCTTGCATTGCCGCGAAGTGTGTGGCTTTGAAGAAACTCTGCATTAAGAGTTGTCCTGTTTCTGATCAAGGAATGGA AGCACTGGCAAGTGGGTGTCCCAATTTGGTGAAGGTGAAGGTGAAGAAGTGCAAGGGTGTCACCTCTGAAGGTGGGGATT GGTTGAGGCTCACAAGGGGTTCAGTTTCTGTTAATTTAGATGCAAATGAAGCAGAACTTCAAGATGCGAGTGCTAGTGAT GGTGGAGCACAAGAAAATGGCCTAGAATTTCCTCCAATGCCTGGCCAAACAGCAGCATCTTCATCGGCCAATGTTGGTGC ATCGATCAGTGGTGCTGGACGATCTAGTTCGTTCAAGTCGAGGTTGGGACTTTTGTCTGGGAGGAGCTTAGTGGCTAGCA CCTTGAGAAGATGGTCAGGTGGTAGCACTAGTGGGCGCCATGCTTAG
CDS sequence (LotjaGi5g1v0030800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCCAGGCTTCTTCCACGGCCGCCGTCGCTTGCCGCCGCGAAAATTGTCAAGCAAACCGCTCCGGCAGCATCTCCAA GACCAGATCCACTGCCTCGGTATCTCCGATGCTCGCCGCCGAGGAAGACGCCGATGTTAACCGCGGTGGCCGGGCGGTGG TTGAAGGAAAAACAGATTACATCTCCGATCTCCCTGATGAGTGTTTGGCTGTGGTGTTTCAGTCGCTGAGCTCGGCTGAT CGGAACCGGTGCTCGCTCGTCTGCCGGCGGTGGCTTATGGTTGAGGGACAGAGCCGGCATCGTCTCTCGCTCAACGCGCA GATGGATCTGCTTCCGGTAATCACTTCTCTGTTCTCTCGATTTGATTCTGTGACGAAGCTTGCTCTGAAATGCGATCGCA GATCGGTTAGCATCCGCGACGACGCGCTTGCTATGATCTCTGAGAGGTGCCCTAATCTCACGCGCCTCAAGCTCCGCGCG TGCCGCGAGATCACTGACTCCGGGATGGAGGCCTTCGCGAAGAATTGTAAGGGTTTGAAGAAGCTCTCGTGCGGATCGTG CACGTTTGGATCTAAAGGGATGAACGCTGTGCTTGATAATTGTGCTTCCCTGGAGGAGCTATCGGTGAAGCGCCTCCGTG GAATCACCGAGACGGCGGAGCCGATTGGTGCTGGCGTTGCGGCGGGGTCGCTGAAGACGCTTTGCTTGAAGGAGCTTTAC AACGGGCAATGCTTCAGGTCGTTGATTCTCGGTGCCAAGAACTTGAGGACGCTGAAGCTTTTCCGGTGCTCTGGTGACTG GGATAGCCTCTTTCAGCTCGTTGCTGCGGAAAGGGCCACGAGCATGGTCGAGATTCACCTGGAGAGGCTCCAAATTGGCG ATGCTGGGTTGCGAGCTATCGTGAACTATTCGAGCTTGGAGATTTTGCATCTTGTGAAGACCCCTGAGTGCACGGATTCA GGGCTTGTTGCGGTTGCGGAGCGATGCAAGCTGTTGAGGAAGCTTCATATTGATGGGTGGAAGGCGAATCGAATTGGTGA TGAAGGGTTGATAGCGGTTGCCAAGTTCTGCCCTAATTTGCAGGAACTTGTGCTCATTGGGGTGAACCCCACTAAGGCTA GTTTGGAAATGTTGGCATCTAATTGCCAGAATCTAGAGCGGTTGGCTCTGTGTGGAAGCGATACAGTTGGTGATCCTGAA TTATCTTGCATTGCCGCGAAGTGTGTGGCTTTGAAGAAACTCTGCATTAAGAGTTGTCCTGTTTCTGATCAAGGAATGGA AGCACTGGCAAGTGGGTGTCCCAATTTGGTGAAGGTGAAGGTGAAGAAGTGCAAGGGTGTCACCTCTGAAGGTGGGGATT GGTTGAGGCTCACAAGGGGTTCAGTTTCTGTTAATTTAGATGCAAATGAAGCAGAACTTCAAGATGCGAGTGCTAGTGAT GGTGGAGCACAAGAAAATGGCCTAGAATTTCCTCCAATGCCTGGCCAAACAGCAGCATCTTCATCGGCCAATGTTGGTGC ATCGATCAGTGGTGCTGGACGATCTAGTTCGTTCAAGTCGAGGTTGGGACTTTTGTCTGGGAGGAGCTTAGTGGCTAGCA CCTTGAGAAGATGGTCAGGTGGTAGCACTAGTGGGCGCCATGCTTAG
Protein sequence (LotjaGi5g1v0030800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQASSTAAVACRRENCQANRSGSISKTRSTASVSPMLAAEEDADVNRGGRAVVEGKTDYISDLPDECLAVVFQSLSSAD RNRCSLVCRRWLMVEGQSRHRLSLNAQMDLLPVITSLFSRFDSVTKLALKCDRRSVSIRDDALAMISERCPNLTRLKLRA CREITDSGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCASLEELSVKRLRGITETAEPIGAGVAAGSLKTLCLKELY NGQCFRSLILGAKNLRTLKLFRCSGDWDSLFQLVAAERATSMVEIHLERLQIGDAGLRAIVNYSSLEILHLVKTPECTDS GLVAVAERCKLLRKLHIDGWKANRIGDEGLIAVAKFCPNLQELVLIGVNPTKASLEMLASNCQNLERLALCGSDTVGDPE LSCIAAKCVALKKLCIKSCPVSDQGMEALASGCPNLVKVKVKKCKGVTSEGGDWLRLTRGSVSVNLDANEAELQDASASD GGAQENGLEFPPMPGQTAASSSANVGASISGAGRSSSFKSRLGLLSGRSLVASTLRRWSGGSTSGRHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 51 | 544 | 494 | 2.2E-238 | – | |
| PANTHER | 51 | 544 | 494 | 2.2E-238 | – | |
| SUPERFAMILY | 55 | 93 | 39 | 1.7E-10 | ||
| ProSiteProfiles | 58 | 104 | 47 | 9.312 | ||
| Pfam | 61 | 93 | 33 | 9.6E-8 | ||
| Gene3D | 62 | 95 | 34 | 5.8E-9 | – | |
| Gene3D | 102 | 219 | 118 | 2.0E-10 | ||
| SUPERFAMILY | 111 | 456 | 346 | 2.2E-40 | – | |
| Pfam | 150 | 173 | 24 | 0.044 | ||
| SMART | 150 | 175 | 26 | 2.3E-5 | ||
| SMART | 176 | 200 | 25 | 91.0 | ||
| Gene3D | 226 | 470 | 245 | 2.6E-41 | ||
| SMART | 303 | 328 | 26 | 120.0 | ||
| SMART | 329 | 356 | 28 | 32.0 | ||
| SMART | 357 | 381 | 25 | 290.0 | ||
| SMART | 382 | 407 | 26 | 130.0 | ||
| SMART | 408 | 432 | 25 | 0.0039 | ||
| Pfam | 411 | 430 | 20 | 1.8 | ||
| SMART | 433 | 460 | 28 | 460.0 | ||
| MobiDBLite | 473 | 519 | 47 | - | – | |
| MobiDBLite | 495 | 519 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0030800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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