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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0031400 |
Transcript ID | LotjaGi5g1v0031400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | MYB-related transcription factor; TAIR: AT5G67300.1 myb domain protein r1; Swiss-Prot: sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44; TrEMBL-Plants: tr|V7CUC3|V7CUC3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0031400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5144463..5146630) extracted from Lotus japonicus Gifu genome v1.2.
TTGATAAGTATTCTTGAATGCGCGGATTCTTTTCTATATTGGTATTTGGTGACTTTATTTTTTATAATAATTAGATTTCT TATATCACGAACTGTGAAATTGAGTTCAAGTAGCAGCATAAAATAAAAAATATTCTATTTTGAGTTTATTCTCACTTAAC AAGTTAACAGATAACACTGGCTTAACGATAGGCAAAGATAACGTGATTACATAAAATACGTGCCAACTCCACGCGTGATG CTGCTTTGCCAGCTGTATCCTACTAAGTAACTGCCCCGCCAACCGGTCACTATCACCGGCTCAACCAGTCATCCTTATCA CTTTCGCAATTTTTCTATTTCTCCTCTCAAACCCGCACCCTCTTCTCACAGAGTCAGAGGCTGCTGCAACCTCCTCTCTC TGTCTTTCTCAAATGGATCGGGTCAAGGGTCCATGGAGCCCCGAAGAAGACGAAGCGTTAACGAGGCTGGTTCAGGTTCA CGGCCCCAAGAACTGGACGGCGATAAGCAAATCGATTCCGGGTCGATCCGGGAAATCGTGCCGTCTGCGGTGGTGCAACC AGCTCTCGCCAGAGGTCGAGCACCGTCCGTTCACGCCGGAGGAGGACAGCGCCATCATCAGGGCGCATGCCAGGTTTGGG AACAAGTGGGCCACCATAGCTCGCATCCTCAACGGCCGCACCGATAACGCTGTGAAGAATCACTGGAACTCCACGCTTAA GAGAAAATGCTCCGCCGTCGATACCGCCGTTGATCACCGTCCTCTTAAACGGTCCGCCAGCGTCGGCGCGGGGTGTTTGA ACCCGAGTAGCCCGACCGGGTCTGCCATGAGCGATCCGGGTCCTCCCGCCGCTATCTCCACTGACGCTCCGATAGCAGTA CCCGCCGCTGTGGTTGTTCCTGCCACCGATCCAGCCACTTCGCTCAGCTTGTCTCTGCCCGGGTTTGATTCATCCGGGTC CGGGTCAGGGTCGAAGCAGCTGTTTGGGGCGGAGTTTCTGGCGGTGATGCAGGAGATGATAAGGAAGGAAGTGAGGAGTT ACATGTCGGGGATGGAGGAGAAGAATGGAGCGTGTATGCCAGCGGAAGCCATTGGAAACGCTGTGATGAAACGAATGGGA ATTAGCAACGTCAAGTAGAAAATTCGCATGAAATTGCAGAGTAGGAAAAAAAATGTTGTTGAAGTGTTTATTTTATCTTT TTTTTTTTAGTTTAATTTTAATTTCCCTTTACTTGAGGGTTAAAAAATGGTAATAATTATTTTGGTGCTGTGCATAATGA CATAACGTGGACTTCAAAACTGGACGATTAATTAATTAATCAACTCTGGTAATTTGTTAGTTTCCGTTTGGTTTGGTTTA AATGTGATGGATGAGTGTTGAGTTTACCAAAAATTCAACTACTATATGCACTTAGAACTCTCTCTAGGAAGTGGGAATGA TTATGAGGTTTTTCTGTTCTCACTGCATAATCACTTGGAACTCTTTAGAAATGATGATTATGAGGTTCTTATCACTGTAA AACTCACTTGTACTCATTTCAAAGATAGGTCATAGATATGAGTTTGAGGGAAGGGTGAAGCAAGTTGGTGATGTGGCAGA GGGTAGGACAGAAAGGACACAACCGTTTTTGTTTGTGAAGGAAGATCCAAAGGTTGGGATTGTATCATGGAATGGCAAGA GTGGGGTCGGGTTTGGAATATTTTTTGTTTTGGCGGTGGGAACTTGTGGGGCAAGTGATTAGAAACCAAATTAAGGCATG TGACAAACATGGATCAATTGAAGAAAGAGATGTGAATTTGAAGGCTAACCACTGATTAGATGTTTACCGGCTTATAGCGA TAGAATGATTGATTTGCCAGCCAACGATCGTAAGATTTAGGTAAATAGTTTAACTCAAAGTTTTTTCATAATCCAATTTC ACATATAGATAGATAGATATTCATAAGCTATGTTAAACAATTTAGAAAATTAAATTTGAAACAACTTATAACCAGATCAT AAGTTATTTATCTAAACCAATAAGATGTTGTGAGTTTATGACCCCATTTGAAAGAACTTATTTGAGTTTATCTGATAGCA TAAACATTTATGTCAGTGTTTGGGAGAGCTTATGCAAACAGCTTATGACCTACCATAAGCTCTGATCGGGTGGATCACGA GAGCGGGG
CDS sequence (LotjaGi5g1v0031400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGGGTCAAGGGTCCATGGAGCCCCGAAGAAGACGAAGCGTTAACGAGGCTGGTTCAGGTTCACGGCCCCAAGAA CTGGACGGCGATAAGCAAATCGATTCCGGGTCGATCCGGGAAATCGTGCCGTCTGCGGTGGTGCAACCAGCTCTCGCCAG AGGTCGAGCACCGTCCGTTCACGCCGGAGGAGGACAGCGCCATCATCAGGGCGCATGCCAGGTTTGGGAACAAGTGGGCC ACCATAGCTCGCATCCTCAACGGCCGCACCGATAACGCTGTGAAGAATCACTGGAACTCCACGCTTAAGAGAAAATGCTC CGCCGTCGATACCGCCGTTGATCACCGTCCTCTTAAACGGTCCGCCAGCGTCGGCGCGGGGTGTTTGAACCCGAGTAGCC CGACCGGGTCTGCCATGAGCGATCCGGGTCCTCCCGCCGCTATCTCCACTGACGCTCCGATAGCAGTACCCGCCGCTGTG GTTGTTCCTGCCACCGATCCAGCCACTTCGCTCAGCTTGTCTCTGCCCGGGTTTGATTCATCCGGGTCCGGGTCAGGGTC GAAGCAGCTGTTTGGGGCGGAGTTTCTGGCGGTGATGCAGGAGATGATAAGGAAGGAAGTGAGGAGTTACATGTCGGGGA TGGAGGAGAAGAATGGAGCGTGTATGCCAGCGGAAGCCATTGGAAACGCTGTGATGAAACGAATGGGAATTAGCAACGTC AAGTAG
Protein sequence (LotjaGi5g1v0031400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRVKGPWSPEEDEALTRLVQVHGPKNWTAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTPEEDSAIIRAHARFGNKWA TIARILNGRTDNAVKNHWNSTLKRKCSAVDTAVDHRPLKRSASVGAGCLNPSSPTGSAMSDPGPPAAISTDAPIAVPAAV VVPATDPATSLSLSLPGFDSSGSGSGSKQLFGAEFLAVMQEMIRKEVRSYMSGMEEKNGACMPAEAIGNAVMKRMGISNV K
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 55 | 55 | 28.359 | ||
PANTHER | 1 | 196 | 196 | 7.1E-101 | – | |
PANTHER | 1 | 196 | 196 | 7.1E-101 | ||
SUPERFAMILY | 2 | 98 | 97 | 1.61E-32 | ||
Gene3D | 4 | 56 | 53 | 1.9E-23 | – | |
SMART | 4 | 53 | 50 | 6.5E-17 | ||
Pfam | 5 | 50 | 46 | 4.3E-17 | ||
CDD | 7 | 49 | 43 | 4.35926E-17 | ||
SMART | 56 | 104 | 49 | 6.7E-15 | ||
ProSiteProfiles | 57 | 106 | 50 | 20.875 | ||
Pfam | 59 | 100 | 42 | 4.6E-14 | ||
Gene3D | 59 | 117 | 59 | 4.0E-19 | – | |
CDD | 59 | 102 | 44 | 5.77079E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0031400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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