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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0031600 |
| Transcript ID | LotjaGi5g1v0031600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ran gtpase-activating protein 2; TAIR: AT5G43070.1 WPP domain protein 1; Swiss-Prot: sp|Q9FMH6|WPP1_ARATH WPP domain-containing protein 1; TrEMBL-Plants: tr|A0A151TTY3|A0A151TTY3_CAJCA MFP1 attachment factor 1; Found in the gene: LotjaGi5g1v0031600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5206489..5207475) extracted from Lotus japonicus Gifu genome v1.2.
GGCTCACATAAAAAGCCCACAACTCATTACATTACACAAATCACATAGGCAGAGCTGAGTCAATTTCAAATTTTCAATTC CGTTGCTTCCTTCCCACTCTTCAAATGTCCGACCCGGAATTCCAACACTCCGCCGCGTCTCCGTTGAACCCCAACCCCGC CACCTCCTTCACCATATGGCCTCCGACACAGCGCACACGCGACGCCGTCATCAACCGCCTCATCGAAACCCTCTCCGGCC CCTCCTCAGTCCTCTCCAAGCGCTACGGCACAATGTCACCTCACGACGCCTCCGCCGCCGCGTATCAGATCGAGGACGCC GCGTTCTCCGCTGCCTCCTCCTCCGTCTCTCCTGACGATGACGGCATCCAGATCCTCCATGTCTACTCCAAGGAGATCAG CAAGCGCGTGGTCGGCAATGTCAAGGCCAAACCTCCTCCCGCCGGTGACGATGTAGACTCCGACGTCGCTCCTCCACCCG CCCAAGAAGCTGAGTCCGCCGCCGTTTCCGACTCTTGATCTGTCAACAGCGAGAGAATGTTAGGGTTCATTCATTGTTTG TGATCTGCATGCTTGTTGCATCCAATTAGTCTATTACATAATTAGATGAGTGAGTTATGGTGCATTGGTGATTGATGAGC AATAATGGTGTTTCTTTTGTTCTGCAAGCTCTCTAGAAATGATTGTGTAATGTAGCAACTACATTCTAGAAACATTCTAT TATGCTAATGATATGCGTGCTTGAATACACTAATGATTATTGGATCATTGTTCTTAACCTTCTATGTTGTTAATGATTTA GATCATTGTTCTTAACTTTCTATGTTGTTAATGATTAGAGTTATCTACAGAACAGAACATAGGATAGCATATATTGAGGG CGTTATCTAAGGTGAAATACCACTTGGGGTACATGCTATGCCATCAATAATTTAGCTGCCATAGTAGGTTCTTGAACCTT TTGAAATTTGCAATAGTTCTGTACCTC
CDS sequence (LotjaGi5g1v0031600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGACCCGGAATTCCAACACTCCGCCGCGTCTCCGTTGAACCCCAACCCCGCCACCTCCTTCACCATATGGCCTCC GACACAGCGCACACGCGACGCCGTCATCAACCGCCTCATCGAAACCCTCTCCGGCCCCTCCTCAGTCCTCTCCAAGCGCT ACGGCACAATGTCACCTCACGACGCCTCCGCCGCCGCGTATCAGATCGAGGACGCCGCGTTCTCCGCTGCCTCCTCCTCC GTCTCTCCTGACGATGACGGCATCCAGATCCTCCATGTCTACTCCAAGGAGATCAGCAAGCGCGTGGTCGGCAATGTCAA GGCCAAACCTCCTCCCGCCGGTGACGATGTAGACTCCGACGTCGCTCCTCCACCCGCCCAAGAAGCTGAGTCCGCCGCCG TTTCCGACTCTTGA
Protein sequence (LotjaGi5g1v0031600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDPEFQHSAASPLNPNPATSFTIWPPTQRTRDAVINRLIETLSGPSSVLSKRYGTMSPHDASAAAYQIEDAAFSAASSS VSPDDDGIQILHVYSKEISKRVVGNVKAKPPPAGDDVDSDVAPPPAQEAESAAVSDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 10 | 132 | 123 | 4.4E-44 | – | |
| PANTHER | 10 | 132 | 123 | 4.4E-44 | – | |
| Pfam | 21 | 112 | 92 | 1.5E-33 | ||
| Gene3D | 21 | 118 | 98 | 1.1E-32 | ||
| MobiDBLite | 103 | 137 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0031600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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