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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0032700 |
| Transcript ID | LotjaGi5g1v0032700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT2G14760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84; TrEMBL-Plants: tr|K7MNL7|K7MNL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0032700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5400473..5402626) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTGTTGATGGCAAGCAAACATTTAATTAGCTCCATTTTTCAGTGGCATTATTAGAGCACAAATCAGCCTCCTTTTTC TTCCTAAGCCAATTTTTTCTTATCATAACATAGCATATAGCATGGAACCTGTAGGAGTTTTCCCTGATGGAGAATGGGAT TTCTTTAGAAGAATGTTTGCAGGTGAGGAGCAAGGTTACTCAAATTTTGCTCTGCAAAATGATGAACTGAACAACATTGG AACACAATTTTGTTCTGCTCCTGAAACTGGTGAAAATGAGCTCATGTTTTATTCTTTAGATGCTCACAACTCAAACTATT CACAGCACATTTCTCAGGAAAATAGTTACAGTAGCAATTGCAGTGGTGACACTGTCTTCAACTATTTTAGTTACCCTGAC CATATGCTAGCAAACAATTATACTTGTGGTGCTGCATCCATGGATTTTTGCATGGATGAGAATTATTTTGCATCTTTTGT CCCATCACTACTTGCTGACATTGCAATGGAAGAGAATGTCAACAACTTGAGTGAGCATGTGGGGAGTGAAAGATTGGAGA ATTCTGCTGATTACAGACATCAAATTCAGTTGCAGCTGAAAAGGAAGCTTGATGTGCTAGAACCAGAGGTTCCTGCTAAT GATAAAACAAACAACAGAGCTGAGAGTCAGAAGAAAAAACCTCGTCTTTCAAAAGATGTAAGTTTTGCCCTTGATTTTTT GACACTATAAATCTGCGTATAAGAGAAACTATATTCGTGCTGAGATAACGAAGCATATCAATATATAATAATTTTATGGA AATAGATCTAAGTTAACCTGTATTCCAAATTGATAGTATAATTAATAATCCAGGAAATCCTAATTTATGAATCCTAATTC ATAAACTTTGAATGTGGAAGTTTTGTAACATTTGTGTTTGTCCAATATCAGGGCCAAGGTTGCATGAAAAATTCAAGGTC TAAGAAGAACCTGCAGAAACTTGCAAGCAATGGAGAGGAGGCAGAAGAGACTACTACAGGATCAAATGGACAAAGCTCCT GTAGTAGCATCACAGAGGATGATAATGCTTCTATGGAAAATAGTGTAGGAGCTACTTCAATTGGAAAGACGCGAGCCAGT AGGGGATCAGCAACAGATCCCCAGAGTCTCTATGCAAGGGTAATTAGTCGTATATGTTATTTATAATATGTTTCTTACGT GTTAAAATTAATTTGCAATGAAGTCTTTTTAATTTGTTAACCATTTTTTCTTAGTCATAAGTGAAGTATTTTTTATATGT TGCAGTTGTATATGTACTTAATTACTCTTTTATGAATCTTGCAGAAAAGAAGAGAGAAAATAAATGAGCGACTGAGAATC CTACAGAATCTTGTCCCAAATGGAACAAAGGTGAATATAGATAGTGTAATTTTCTTGCTTTTAATATAGTGGTAGGTGTG CTAATAAATTCATTGGAGTTGTGCCAAATAACTAATTTCATTGATGGTTGTTATACACAGGTTGATATAAGTACAATGCT TGAAGAGGCAGTGAATTATGTGAAATTTTTGCAGGTTCAGATCAAGGTATGTAGTAGGAGACATGGATTGTCATATTAAA GATATTAACATGTATACAATCAAAATTATAATCCTTGTTTCTTTCTCTTTGTAGCTTTTAAGCTCAGATGATATGTGGAT GTATGCTCCTCTTGCTTATAATGGACTTGACATTGGGCTCAATCTCAACCTGAACAGTTCTCCACCACTATGAGTTTCAA GAAGCTAGCAGACTGCAACTACAATCAAAGGAAAAACAAAGTCCTTGAAAATATATAAAGAAATTGAATAATATGTATAT GTAGTAGCTTTGTCTAAAATGCACCACCAAAAATAGATGGTGTATACATGGACTATTGCACCACGGCTTCTTTAGTTTCG CTTTGTAACTACGTGTAATAGAGCTTATAGCATTTTGTAACCATAAGTTCGAAACTCTAATTTTATAAATTTGATGTCAC TACTTTTCAACCTGAGAGATGTGGAAAAAAGTGAAGAACAAATCAGCATCAAGAGAGAAACATGAGATAAAGTTACAAAC AAGTAGTAGCTAGTTAAAATAAACAATACAACTATACAAGTATATAAAGTGTGCGAAATGAATCAAAACAAAAG
CDS sequence (LotjaGi5g1v0032700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCTGTAGGAGTTTTCCCTGATGGAGAATGGGATTTCTTTAGAAGAATGTTTGCAGGTGAGGAGCAAGGTTACTC AAATTTTGCTCTGCAAAATGATGAACTGAACAACATTGGAACACAATTTTGTTCTGCTCCTGAAACTGGTGAAAATGAGC TCATGTTTTATTCTTTAGATGCTCACAACTCAAACTATTCACAGCACATTTCTCAGGAAAATAGTTACAGTAGCAATTGC AGTGGTGACACTGTCTTCAACTATTTTAGTTACCCTGACCATATGCTAGCAAACAATTATACTTGTGGTGCTGCATCCAT GGATTTTTGCATGGATGAGAATTATTTTGCATCTTTTGTCCCATCACTACTTGCTGACATTGCAATGGAAGAGAATGTCA ACAACTTGAGTGAGCATGTGGGGAGTGAAAGATTGGAGAATTCTGCTGATTACAGACATCAAATTCAGTTGCAGCTGAAA AGGAAGCTTGATGTGCTAGAACCAGAGGTTCCTGCTAATGATAAAACAAACAACAGAGCTGAGAGTCAGAAGAAAAAACC TCGTCTTTCAAAAGATGGCCAAGGTTGCATGAAAAATTCAAGGTCTAAGAAGAACCTGCAGAAACTTGCAAGCAATGGAG AGGAGGCAGAAGAGACTACTACAGGATCAAATGGACAAAGCTCCTGTAGTAGCATCACAGAGGATGATAATGCTTCTATG GAAAATAGTGTAGGAGCTACTTCAATTGGAAAGACGCGAGCCAGTAGGGGATCAGCAACAGATCCCCAGAGTCTCTATGC AAGGAAAAGAAGAGAGAAAATAAATGAGCGACTGAGAATCCTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATAA GTACAATGCTTGAAGAGGCAGTGAATTATGTGAAATTTTTGCAGGTTCAGATCAAGCTTTTAAGCTCAGATGATATGTGG ATGTATGCTCCTCTTGCTTATAATGGACTTGACATTGGGCTCAATCTCAACCTGAACAGTTCTCCACCACTATGA
Protein sequence (LotjaGi5g1v0032700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPVGVFPDGEWDFFRRMFAGEEQGYSNFALQNDELNNIGTQFCSAPETGENELMFYSLDAHNSNYSQHISQENSYSSNC SGDTVFNYFSYPDHMLANNYTCGAASMDFCMDENYFASFVPSLLADIAMEENVNNLSEHVGSERLENSADYRHQIQLQLK RKLDVLEPEVPANDKTNNRAESQKKKPRLSKDGQGCMKNSRSKKNLQKLASNGEEAEETTTGSNGQSSCSSITEDDNASM ENSVGATSIGKTRASRGSATDPQSLYARKRREKINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQVQIKLLSSDDMW MYAPLAYNGLDIGLNLNLNSSPPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 340 | 338 | 1.0E-94 | – | |
| PANTHER | 3 | 340 | 338 | 1.0E-94 | – | |
| MobiDBLite | 166 | 269 | 104 | - | – | |
| MobiDBLite | 178 | 192 | 15 | - | – | |
| MobiDBLite | 195 | 262 | 68 | - | – | |
| Coils | 199 | 219 | 21 | - | – | |
| ProSiteProfiles | 258 | 307 | 50 | 15.301 | ||
| SUPERFAMILY | 258 | 323 | 66 | 1.96E-14 | ||
| Gene3D | 260 | 316 | 57 | 3.6E-11 | ||
| SMART | 264 | 313 | 50 | 1.7E-11 | ||
| CDD | 267 | 312 | 46 | 2.84407E-12 | ||
| Pfam | 268 | 308 | 41 | 9.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0032700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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