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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0033000 |
| Transcript ID | LotjaGi5g1v0033000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Outer mitochondrial membrane protein porin; TAIR: AT5G67500.3 voltage dependent anion channel 2; Swiss-Prot: sp|Q9FJX3|VDAC2_ARATH Mitochondrial outer membrane protein porin 2; TrEMBL-Plants: tr|I3SIM2|I3SIM2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0033000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5431044..5433324) extracted from Lotus japonicus Gifu genome v1.2.
CAATTGTAATTTTTTTATCCATTTTTTAGTCAAATGAAATCCATAGAGAAAGGGTTTACATAAACCCACTCCCCCACCCT CGTTGGTTTCTTCTTCTCTTCTCTGTGTCCGCAGCCAAAAATGACACCCAAAGGCAAAGGAGGACCTGTACCCTTCTCCG ATATCGTCAAGCGAGAAAGAGGTAACTCACTCACTCTCTCTCCCATTTTCTCTCTTCAATTCGATTCGATTATTGTGGTG TTTTTGCAGACATTCTCAACAAAGATTACAACTCCGATCATAGTTTAACCATCTCTTCCTCCACCACCTCTGGTCTCGTG CGTTCCCTTCCTTTTCCGATTGAGTGTTTAGGTTTATTTATTTGCAGCTTGTGATTTCATTCCTTGTTTTGTTTCAGAAC TTGAGCTCAACGTTGGTGAAGAGTAGAGGACTCTCCTCCGGGGCTGTGGCTGCGGCGTTTAAGCACAACAACAAGACACT TCATTTCAAACTTGACACTGATTCAACTGTATGTGTACTGTATCTATCTAACCTCTCTTTCTCTAGCCAAAGGGGAGGGT TTTAGTACCCTTAAGACTATTCTGTCAAATATTATGACTAGATTGCAAATTACAATAGTTTCTTATGGAATATGACATGG TGCATCAAGGGAAAAACTATTCAATTCACAAGAGTACAGAACCCCCTCTACTATAAGCGCCCACCGGAGAAAAATCCCAC ATTTTATTGTTTAACCTGGTAGTAATGCATTGCATATCTGTTCTTCAGGTGCTGACCACATTTACTATAGCCAATGTTGT GCCTTCAACAAAAACCGTTGCTTCTATACGACTACCTTATTATGACTCCGGCAAGGTACAGATTTTTGGGATGTAAGATT GGACAGAAATATAGTAGGATTTTAGATTGTTGAGGATTGTATTTTTTTTTTTATGCAGATTGCGGTTCAGTATCTTCATC ATCATGTGGCTTTAACTGGTGCTGTTGGTTTGAACCGATCCCCTGATGTCGATTTTTCTGCGACTATTGGCACTCCCAGC ATTGCTTTTGGAGCTGAAACCAGCTACTCCACAAGTGCTGGCAAGTTTACAAAGTACAATGCTGGCTTATGCTTCCAAAT GCCAAGTTCCAATGCTTCAGTTATTCTGTAAGTAATTGAGGTATTTTTAGCTGTCAAATGTTAAATGGGCTTATGGAATG CATATTTGCAAAGCCACACACTGATCATATTTTTTTTGGAACAAATCCCATCGTTTTACTAGAAAGTTTTTTCTGTAAAC AGTTTTAGATGCTTTTTTGTGAATGTGTGTTTTGACATCTAGTCTTGAAGTTATTGAATAACTGTTACTTGTATTGATTG TGTTGAGAGTTAGATACACATTCTACACTTTCTCAGGAGATAAATTAGCGTGCAGTGTTGATACAGCAAATATATGTTTG GTATATAAGCATTTCCTTTTCATTTATGCAGAGCTGATAAGGGAGACTCTATGAAGGTGTCGTACTTGCGGGAGCTAGAA AGATTGAATGGGGGAGCTATTGTGGGAGAGATTAGCAGAGGATTCTCTAAAAATGACAACACGTTAACAGTTGGATGTTC ATATGTGGTTGATTCTCAGACAGTTGTGAAGGCAAAGCTGAACAACCATGGCAATCTTGGGGCCTTGTTGCAGCATGAAC TTACACACAAGTCATTCTTGACAATCTCTGGCGCCTTTGAAACAAAGGCTTTGGAAAAGAATCCCAAGTTTGGTTTCTCA CTCTTGCTCAAGCCTTAACAGATATATAAATAGGGACAATATATTGAGTTATACTACCACATATCTTTCAGTTGAGTTGA GTGAAAGGAAGAAAGTATAGGAAATTGATATAGATTGTTGATGTCTTAATTTTTTGTTCCTATTATCTTCAAATGTTTGA TTGCACGTCCTGGATTAGGATGGAATTGTCATTGGCAATGACTTAATTTTGTGTACCTATTTCTTGTTGGAGGAAGAAAT TTAATCAATTATTTATTTTGAACTTCTGAGCATTGTCTGAGCTTTATGAATTGTGTCTTTAGCATATTGGCATTTCCATA TGTTTCATACTTCATACACACTTGATATATTTGGATGTTAACACTTTGCAAGCTTCTTCAAGAGGGTTGTTGTACGGATT TAAGTTGTGTGAACACATTGACCCTATCGCATTGCTGTGATATGATTAGGCTATTGCCAAATGCCATGGTCAATTCTTGT TGTTTACTTGTTGAGTGCTCCACAGTCTTAGGGGATGTTCT
CDS sequence (LotjaGi5g1v0033000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACCCAAAGGCAAAGGAGGACCTGTACCCTTCTCCGATATCGTCAAGCGAGAAAGAGACATTCTCAACAAAGATTA CAACTCCGATCATAGTTTAACCATCTCTTCCTCCACCACCTCTGGTCTCAACTTGAGCTCAACGTTGGTGAAGAGTAGAG GACTCTCCTCCGGGGCTGTGGCTGCGGCGTTTAAGCACAACAACAAGACACTTCATTTCAAACTTGACACTGATTCAACT GTGCTGACCACATTTACTATAGCCAATGTTGTGCCTTCAACAAAAACCGTTGCTTCTATACGACTACCTTATTATGACTC CGGCAAGATTGCGGTTCAGTATCTTCATCATCATGTGGCTTTAACTGGTGCTGTTGGTTTGAACCGATCCCCTGATGTCG ATTTTTCTGCGACTATTGGCACTCCCAGCATTGCTTTTGGAGCTGAAACCAGCTACTCCACAAGTGCTGGCAAGTTTACA AAGTACAATGCTGGCTTATGCTTCCAAATGCCAAGTTCCAATGCTTCAGTTATTCTAGCTGATAAGGGAGACTCTATGAA GGTGTCGTACTTGCGGGAGCTAGAAAGATTGAATGGGGGAGCTATTGTGGGAGAGATTAGCAGAGGATTCTCTAAAAATG ACAACACGTTAACAGTTGGATGTTCATATGTGGTTGATTCTCAGACAGTTGTGAAGGCAAAGCTGAACAACCATGGCAAT CTTGGGGCCTTGTTGCAGCATGAACTTACACACAAGTCATTCTTGACAATCTCTGGCGCCTTTGAAACAAAGGCTTTGGA AAAGAATCCCAAGTTTGGTTTCTCACTCTTGCTCAAGCCTTAA
Protein sequence (LotjaGi5g1v0033000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTPKGKGGPVPFSDIVKRERDILNKDYNSDHSLTISSSTTSGLNLSSTLVKSRGLSSGAVAAAFKHNNKTLHFKLDTDST VLTTFTIANVVPSTKTVASIRLPYYDSGKIAVQYLHHHVALTGAVGLNRSPDVDFSATIGTPSIAFGAETSYSTSAGKFT KYNAGLCFQMPSSNASVILADKGDSMKVSYLRELERLNGGAIVGEISRGFSKNDNTLTVGCSYVVDSQTVVKAKLNNHGN LGALLQHELTHKSFLTISGAFETKALEKNPKFGFSLLLKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 280 | 274 | 1.9E-145 | – | |
| PANTHER | 7 | 280 | 274 | 1.9E-145 | ||
| Gene3D | 8 | 280 | 273 | 1.1E-50 | ||
| CDD | 9 | 279 | 271 | 3.28041E-64 | – | |
| Pfam | 9 | 273 | 265 | 2.1E-47 | ||
| ProSitePatterns | 223 | 245 | 23 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mitochondrial outer membrane | The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope. | ||
| Molecular function | Voltage-gated anion channel activity | Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Anion transmembrane transport | The process in which an anion is transported across a membrane. |
Expression pattern of LotjaGi5g1v0033000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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