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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0038000 |
| Transcript ID | LotjaGi5g1v0038000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-specific lipid-transfer protein; TAIR: AT3G51590.1 lipid transfer protein 12; Swiss-Prot: sp|P82007|NLTP1_HELAN Non-specific lipid-transfer protein AP10; TrEMBL-Plants: tr|G7IXE1|G7IXE1_MEDTR Lipid transfer protein; Found in the gene: LotjaGi5g1v0038000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6341893..6342443) extracted from Lotus japonicus Gifu genome v1.2.
CACATATCTACTAACCAAGATGCCTGGAAGGAAAATGATGTCTTTTTTCATTCCTGTTATGACATTTGGGATAATGTTAA CCTCTTTCGTTTCAAGCCAGACGGATGAAATCTCTTGCTTTGCTGCCATACCGTATTTGGCACCGTGTCTACCATATCTC ACAGGTTTTGGGCAACCATCGTCTTATTGCTGCGTAGGAGCAACCACTTTAGCTCAAAGAGCTGACACCACTCAAAATCG CAGGGATCTATGTGGTTGTTTGAAAAAAGCTTCTGCACAATTTAATGTGAATGCCGACAAAGCGAAACAGCTCCCGCAAC TCTGTAACATCTCTCTTCCGTTCTCTTTTGATCCTAGTATTGATTGCAACACGTAAGTCTCTCTTTTCCTTGTGAACATG TACATGCTTATTTCACTCTGTTCATGTTTTATCGATTTTGTGCAGGATTCCTTGATGATTTTACACGGTTTGGTGGAAAA AGTTCGAAAGAAATAATAGGTGAAAAAGATAAAGACTATACACTTACGGATCTGCAAAGGGGAAATGTAGA
CDS sequence (LotjaGi5g1v0038000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGGAAGGAAAATGATGTCTTTTTTCATTCCTGTTATGACATTTGGGATAATGTTAACCTCTTTCGTTTCAAGCCA GACGGATGAAATCTCTTGCTTTGCTGCCATACCGTATTTGGCACCGTGTCTACCATATCTCACAGGTTTTGGGCAACCAT CGTCTTATTGCTGCGTAGGAGCAACCACTTTAGCTCAAAGAGCTGACACCACTCAAAATCGCAGGGATCTATGTGGTTGT TTGAAAAAAGCTTCTGCACAATTTAATGTGAATGCCGACAAAGCGAAACAGCTCCCGCAACTCTGTAACATCTCTCTTCC GTTCTCTTTTGATCCTAGTATTGATTGCAACACGATTCCTTGA
Protein sequence (LotjaGi5g1v0038000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPGRKMMSFFIPVMTFGIMLTSFVSSQTDEISCFAAIPYLAPCLPYLTGFGQPSSYCCVGATTLAQRADTTQNRRDLCGC LKKASAQFNVNADKAKQLPQLCNISLPFSFDPSIDCNTIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 119 | 119 | 4.8E-39 | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 119 | 119 | 4.8E-39 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Pfam | 25 | 107 | 83 | 9.2E-6 | ||
| Phobius | 27 | 120 | 94 | - | – | |
| Gene3D | 30 | 120 | 91 | 4.2E-26 | – | |
| SUPERFAMILY | 31 | 119 | 89 | 1.7E-21 | ||
| CDD | 31 | 117 | 87 | 6.8539E-26 | – | |
| PRINTS | 32 | 48 | 17 | 2.2E-16 | ||
| PRINTS | 52 | 66 | 15 | 2.2E-16 | ||
| PRINTS | 73 | 88 | 16 | 2.2E-16 | ||
| PRINTS | 89 | 106 | 18 | 2.2E-16 | ||
| ProSitePatterns | 98 | 119 | 22 | - | ||
| PRINTS | 107 | 118 | 12 | 2.2E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid transport | The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi5g1v0038000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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