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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0039300 |
| Transcript ID | LotjaGi5g1v0039300.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endo-1,4-beta-xylanase, putative, expressed; TAIR: AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|A0A0S3RPM8|A0A0S3RPM8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6648960..6653309) extracted from Lotus japonicus Gifu genome v1.2.
TCCAGTCCAAATAATAATGTATGTCATGAAATTATGAATTATGAATATTGTTATTTCTTTGGGCAATTTTACATAGTGGC AAATTCTACTATTGTTTGATGAACATCATCTAGCTCATACTTGTGATTTAGTCATTACTTTTTCATTGTATAGATTGATT TTTCTATAAACATGTGCTAGTTTTCTTCTTTTAATTGAACTGTGAAATCTGTGTATTTTTATCACACTAACTTGTGTATT TCTTTCTCTTGTTTCTAAAGACCACAAGCACAAAATGTGTTACCACAGGAGATGACAACATCATAATAAACCCCCAGTTT GAGGATGGCTTGAATAGTTGGTCTGGAAGAGGCTGCAAGATTATGTTGCATGATTCAATGGGAGATGGGAAAATTGTTCC GAAGTCTGGGAAGTTCTTTGCATCAGCAACAGAACGCACACAAACCTGGAACGGGATTCAGCAGGATGTAACTGCACATG TGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTTAGTTCGAATATTTGGTAATAATGTTACTAATGCTGATGTAAGAGCT ACTTTGTGGGTTCAAACACCAGATCTTCGAGAGCAGTATATAGGCATTGCAAAGTTAGTCTCTTATTTTTGCTATGAAGC ATATCACTTTCATGCTTATTATTCTGGAATATTGATAAACTTAACAAAATGAAACTTTCTACAGTATGATTTGATCATGG CTTTTATGCATTGGTGATGTTAGAGAGCTCTCTTAACATTTATTTCAATTGCTGAATGAAGTTGGTGTGTTCTGAAGTGT GCAGGCAACAGATAAAGATTGGGTTACAATGCAGGGAAAATTCCTTCTAAATGGCACCCCATCAAAAGTGGTGGTTTATT TAGAGGGCCCCCCTTCTGGCACTGACATTCTTGTCAATACTTTGGTAGTTAAGCATGCAGCAAAAACACCTCCTTCAACT CCACCAGATGTAAAGGTTGGACTTTAGAAACAAGTTTTGTCAATTATTTTAATAATACTAATGTTTTTTTTTTTCTGAAA CTGAATAATACTAATATTTGTGTTTCCTGAAATTGTTTCACACAAGCATTGTTTAAGAACTTTGCTGCTGCCTTATTACA CTATATGTTTCAAGTAACTGTATTCTGCATTCAAAGCCTTATCCCACTAGGTGAGATCGGCTATATGGATCGCTGATCCA TATTAAAGATATCAACCAGCATCGTCTGCTGAAGGCCCAACAAAAATTCCCCCTTTATCCAGGCTTAGGACGGGCTATGC AAGCATAGGCGGAGATTTTTGTTCCAAGTAACTAACAAAGTTGATTTTTGTTTTGCAGAATCTTGCTTTTGGGGTTAATG TCATTGAGAACAGCAATCTGGCTGATGGCACCAACGGATGGTTTCCGCTTGGTAATTGCACTTTAAGTGTTAAAACAGGT TCACCTCATATAATGCCACCAATGGCAAGAGATTCTCTTGGTCCTCATGATCTCCTAAGCGGGCGCTACATCCTCGTAAC TGGTCGGACTCAAACATGGATGGGTCCTGCTCAGATAATCACTGAGAAATTGAAACTTTTTGTGACTTACCAAGTATCTG CATGGGTCAGGATTGGTTCAGGATCAAGTGGGCCACAGAATGTGAATGTTGCTCTTGGTGTTGACAACCAATGGGTCAAT GGAGGACAAACGGAGGTTTCTGATGACAGATGGCATGAAATTGGCGGGTCCTTTAGAATTGAACAGCAGCCATCAAAGGT TATGGTTTATATCCAAGGTCCTGCTTCTGGTGTGGATTTAATGGTTGCTGGACTTCAAATTTTTCCTGTTGATAGACATG CAAGGTTTAGATACTTAAGGATGCAGACAGACAAGGTGACATCTAGTTTTCTTGTATAACATATATAATTGATTTTGCAG CATACCTTTACAAACCTATGGGTAGTTCCCAAGATGGCTTGCACTTGAACTGGCTTGAATGAGTAATATTTGGTTGTGAA TTACTATTTGTACCACGGGTTTTCTCCATGCACCAGCAACATCGGGAAATTAATTTCTGGTAGCACGTGGGCTGGTGCAA GGAGAAAAAAATGCGGTACAAATCAAAGTTGTCAGGATCCTGCAATTTGTGGGAGGATTTCCGTTCTGGATCCTCCTAAT CGGGCTCTACATCCTTGTACTACAAATAGTAATCCCTCATTTGGGTCACACCCTAGGCCCATTCCCAACACCCAAAGGAA AAATAGGAAGAAAAAAGAAGAACAAATGATCTGCAAATAATGGCCTCCAGAGTGGTAGGTATATGCCTTGAGGTTTTTAG TCACAACAAGTTTATAATATAACATAGTATTTCTATGTGTTAAAATGGTTAGGAACTTAGGATGCATAGAATTGATACCA GAATATAGATTAATTTTTTTTACTATTATCTCGTCCACAGGATTACTTATGATACATGTCTTCCCCCTTCCTATTTTATG TTTATACGATCTTCCAACCCAATTCATGAATTTCCTTATCGCTAGAATCTGCATAATATTTCTGAGAGGAGTGCTAGCAA CACACTCTTTTAATAACACACTTCTTGTGTATGGTTTATTTTTTGAAAAGTCACATTTCTCTTACTTTCTTCTTAAATGT GTTGACCTAAACAAAAAATAAGCCAATCAGGAGGAGTGTGTTATTAAAAAGGAGAAGTGTTATCAACACTCACTTTTCAA CACTCAATGATTTGTTCAAATTTATGTGGGTCCTACTAAGTTGGAAGTGGAGCCTATATGTTTAATGGAGCTCACATGAG TTTCAACCAATCAATGAGAGACATTTTTCTTATTAAAAGAGTGTGTTGCTATCATTTCTCTATTTCTGATGACTAAACTA TACGGTCCCCCTAATATGCACCACTTTAAAAGTAAGGATATTGCCCCATGTCTTAATGCCCCATGTCTTAATAAATGTAA CAGCTAAGTATATTCAGACTGGAATGCCTAATTTTTTTATCATATCCATTCTTCATTGATAGAATATGTGGTTCTCTACA TTATTTGTATATAAAGTTTTATATCCATTTGCTGCATTGCAGATTCGTAAGCGTGATGTTATTCTGAAATTCTCTGGGGT TGACTCTAGCAACTACATTAACACCATGGTGCAAGTTAGGCAAACACAGAACAATTTCCCAATTGGAACATGCATCAGTA GAATGAACATTGACAATGAAGATTTCGTTAACTTCTTTGTGAAACATTTCAACTGGGCCGTGTTTGGAAACGAGTTGAAG TGGTATTGGACTGAGCCACAACAAGGGAATTTCAACTACAAGGATGCTGATGATCTGCTAGACTTGTGCCAAAAGAACAA GATAGAAACTCGCGGACACTGCATCTTCTGGGAAGTGGATGGAACAGTTCAGCAATGGATCAAATCACTGAATCAAAATG ATCTGATGACAGCAGTCCAGAATCGTTTAAATGGTTTGCTGACTCGCTACAAGGGCAAGTTCAGTCACTATGATGTTAAC AATGAAATGCTGCATGGTTCATTTTACCAAGATAGGCTAGGTAAGCAGGGACGGATCCAGGTTGATGCAAAATGGGACAG TCTCAAATTTTCTTAAGTGTTTAGATGTTACAAAATAATTTATACTGCCTCATTCAATTACTCATTATTTTGCTTCTACC CTTACCAATTTTTTCTCGTTCTGTCCCTATAGGTAGGGATATCAGGGCAAAAATGTTCAAGACAGCAAACCAACTAGATC CATCTGCTACACTGTTTGTGAATGATTACCATGTTGAAGATGGATGTGACAACAAATCATGCCCAGAAAAATACATGGAA CATATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGGGTTGGAATTCAAGGCCACATTGATAGTCCAGTGGGGCC TATTGTTTGTTCTTCCCTTGATAAACTGGGAATTCTTGGTCTCCCTATATGGTTCACTGAGCTTGATGTGTCTTCTATCA ATGAACATGTCAGAGCCGATGATCTTGAAGTTATGTTGCGCGAAGCGATGGCTCACCCTGCGGTAGAAGGCATCATGTTG TGGGGGTTTTGGGAGTTGTTTATGAGCAGGGACAATTCACACTTGGTAAATGCTGAAGGTGACATCAATGAAGCTGGGAA GAGGTTCCTTGATCTGAAACGAGAGTGGTTGTCTCACAAACATGATCATGTTGATGAGCATGGTCAATTCAGCTTCAGAG GCTTTCATGGAACATACAATGTTGAAGTTGTGACACCAACAAAGAAAATTTCTAAGACTTTTGTGCTTGACAAAGGTGAC TCCCCAATGGTGGTATCCATTGATTTATAA
CDS sequence (LotjaGi5g1v0039300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCATGATTCAATGGGAGATGGGAAAATTGTTCCGAAGTCTGGGAAGTTCTTTGCATCAGCAACAGAACGCACACA AACCTGGAACGGGATTCAGCAGGATGTAACTGCACATGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTTAGTTCGAA TATTTGGTAATAATGTTACTAATGCTGATGTAAGAGCTACTTTGTGGGTTCAAACACCAGATCTTCGAGAGCAGTATATA GGCATTGCAAATGTGCAGGCAACAGATAAAGATTGGGTTACAATGCAGGGAAAATTCCTTCTAAATGGCACCCCATCAAA AGTGGTGGTTTATTTAGAGGGCCCCCCTTCTGGCACTGACATTCTTGTCAATACTTTGGTAGTTAAGCATGCAGCAAAAA CACCTCCTTCAACTCCACCAGATGTAAAGAATCTTGCTTTTGGGGTTAATGTCATTGAGAACAGCAATCTGGCTGATGGC ACCAACGGATGGTTTCCGCTTGGTAATTGCACTTTAAGTGTTAAAACAGGTTCACCTCATATAATGCCACCAATGGCAAG AGATTCTCTTGGTCCTCATGATCTCCTAAGCGGGCGCTACATCCTCGTAACTGGTCGGACTCAAACATGGATGGGTCCTG CTCAGATAATCACTGAGAAATTGAAACTTTTTGTGACTTACCAAGTATCTGCATGGGTCAGGATTGGTTCAGGATCAAGT GGGCCACAGAATGTGAATGTTGCTCTTGGTGTTGACAACCAATGGGTCAATGGAGGACAAACGGAGGTTTCTGATGACAG ATGGCATGAAATTGGCGGGTCCTTTAGAATTGAACAGCAGCCATCAAAGGTTATGGTTTATATCCAAGGTCCTGCTTCTG GTGTGGATTTAATGGTTGCTGGACTTCAAATTTTTCCTGTTGATAGACATGCAAGGTTTAGATACTTAAGGATGCAGACA GACAAGATTCGTAAGCGTGATGTTATTCTGAAATTCTCTGGGGTTGACTCTAGCAACTACATTAACACCATGGTGCAAGT TAGGCAAACACAGAACAATTTCCCAATTGGAACATGCATCAGTAGAATGAACATTGACAATGAAGATTTCGTTAACTTCT TTGTGAAACATTTCAACTGGGCCGTGTTTGGAAACGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTCAAC TACAAGGATGCTGATGATCTGCTAGACTTGTGCCAAAAGAACAAGATAGAAACTCGCGGACACTGCATCTTCTGGGAAGT GGATGGAACAGTTCAGCAATGGATCAAATCACTGAATCAAAATGATCTGATGACAGCAGTCCAGAATCGTTTAAATGGTT TGCTGACTCGCTACAAGGGCAAGTTCAGTCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAAGATAGG CTAGGTAAGGATATCAGGGCAAAAATGTTCAAGACAGCAAACCAACTAGATCCATCTGCTACACTGTTTGTGAATGATTA CCATGTTGAAGATGGATGTGACAACAAATCATGCCCAGAAAAATACATGGAACATATTCTTGATTTGCAAGAGCAAGGTG CCCCAGTTGGAGGGGTTGGAATTCAAGGCCACATTGATAGTCCAGTGGGGCCTATTGTTTGTTCTTCCCTTGATAAACTG GGAATTCTTGGTCTCCCTATATGGTTCACTGAGCTTGATGTGTCTTCTATCAATGAACATGTCAGAGCCGATGATCTTGA AGTTATGTTGCGCGAAGCGATGGCTCACCCTGCGGTAGAAGGCATCATGTTGTGGGGGTTTTGGGAGTTGTTTATGAGCA GGGACAATTCACACTTGGTAAATGCTGAAGGTGACATCAATGAAGCTGGGAAGAGGTTCCTTGATCTGAAACGAGAGTGG TTGTCTCACAAACATGATCATGTTGATGAGCATGGTCAATTCAGCTTCAGAGGCTTTCATGGAACATACAATGTTGAAGT TGTGACACCAACAAAGAAAATTTCTAAGACTTTTGTGCTTGACAAAGGTGACTCCCCAATGGTGGTATCCATTGATTTAT AA
Protein sequence (LotjaGi5g1v0039300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHDSMGDGKIVPKSGKFFASATERTQTWNGIQQDVTAHVQRKLAYEVTALVRIFGNNVTNADVRATLWVQTPDLREQYI GIANVQATDKDWVTMQGKFLLNGTPSKVVVYLEGPPSGTDILVNTLVVKHAAKTPPSTPPDVKNLAFGVNVIENSNLADG TNGWFPLGNCTLSVKTGSPHIMPPMARDSLGPHDLLSGRYILVTGRTQTWMGPAQIITEKLKLFVTYQVSAWVRIGSGSS GPQNVNVALGVDNQWVNGGQTEVSDDRWHEIGGSFRIEQQPSKVMVYIQGPASGVDLMVAGLQIFPVDRHARFRYLRMQT DKIRKRDVILKFSGVDSSNYINTMVQVRQTQNNFPIGTCISRMNIDNEDFVNFFVKHFNWAVFGNELKWYWTEPQQGNFN YKDADDLLDLCQKNKIETRGHCIFWEVDGTVQQWIKSLNQNDLMTAVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFYQDR LGKDIRAKMFKTANQLDPSATLFVNDYHVEDGCDNKSCPEKYMEHILDLQEQGAPVGGVGIQGHIDSPVGPIVCSSLDKL GILGLPIWFTELDVSSINEHVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNSHLVNAEGDINEAGKRFLDLKREW LSHKHDHVDEHGQFSFRGFHGTYNVEVVTPTKKISKTFVLDKGDSPMVVSIDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 131 | 127 | 4.0E-23 | ||
| SUPERFAMILY | 11 | 131 | 121 | 2.0E-27 | ||
| PANTHER | 12 | 693 | 682 | 0.0 | – | |
| PANTHER | 12 | 693 | 682 | 0.0 | – | |
| Pfam | 14 | 116 | 103 | 3.4E-13 | ||
| Gene3D | 147 | 305 | 159 | 1.6E-32 | ||
| SUPERFAMILY | 148 | 308 | 161 | 5.1E-38 | ||
| Pfam | 150 | 293 | 144 | 1.2E-19 | ||
| ProSiteProfiles | 341 | 636 | 296 | 36.654 | ||
| Gene3D | 342 | 645 | 304 | 3.4E-73 | – | |
| SUPERFAMILY | 342 | 644 | 303 | 7.64E-94 | ||
| Pfam | 350 | 607 | 258 | 8.4E-47 | ||
| SMART | 387 | 637 | 251 | 1.4E-10 | ||
| PRINTS | 418 | 430 | 13 | 4.9E-5 | ||
| PRINTS | 500 | 511 | 12 | 4.9E-5 | ||
| PRINTS | 532 | 544 | 13 | 4.9E-5 | ||
| Coils | 619 | 639 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Hydrolase activity, acting on glycosyl bonds | Catalysis of the hydrolysis of any glycosyl bond. |
Expression pattern of LotjaGi5g1v0039300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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