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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0039300 |
| Transcript ID | LotjaGi5g1v0039300.6 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endo-1,4-beta-xylanase A; TAIR: AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|K7M5U2|K7M5U2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6648960..6654023) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGGAGTTCTTCGCGGCGTGTAAAACACACATTCAAAACATATCACAAGCTGTACCATCTAGGTACATAGTTTCTTC TTGGTGTTTAGCACCATTGTTTTCTGATATTGTCTTGTTTGACAGATCATGGCAGGAAACATCTCTGGTCCAACTGTTTG TCAGGGTCCTAATATTTTGCACAATCATGATTTCTCTGGTGGGCTTAACTCTTGGCATCTCAATTGCTGCAATGGCTATG TAATTTCAGCTGACACAGGTAATCATGGAGGAATTTCAATGGAGTCGGGTGGTAATTATGCAGTTATCACTGACCGAAAG GAATGTTGGCAAGGTCTTGAGCAAGATATCACAGACAGAATATCCATTGGTTCCACTTACACGGTTTCAGCTTGTGTTGG AGTATCTGGGCTTTCTCAGGGATCTGCTGATGTTCTAGCTACTCTGAAACTAGAATATCATGGTTCAGCTGCTCGTTACA TGTTCATTGGAAGGTATAAAACTTATTTCATTGCATCCTCTTTCTTGTTTTATAGTAGAAAAATGCCATTACATGTTAAC CATTGTTTTGTACAGAACTTCTGCTATGAAGGGTAGCTGGGAAAAGTTGGAAGGGAAATTCTCATTATCAACTATGCCTG ATCGGGCTATATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACATCCTTATACGATCAGTAGAGATCAACTGTTCCAGT CCAAATAATAATGTATGTCATGAAATTATGAATTATGAATATTGTTATTTCTTTGGGCAATTTTACATAGTGGCAAATTC TACTATTGTTTGATGAACATCATCTAGCTCATACTTGTGATTTAGTCATTACTTTTTCATTGTATAGATTGATTTTTCTA TAAACATGTGCTAGTTTTCTTCTTTTAATTGAACTGTGAAATCTGTGTATTTTTATCACACTAACTTGTGTATTTCTTTC TCTTGTTTCTAAAGACCACAAGCACAAAATGTGTTACCACAGGAGATGACAACATCATAATAAACCCCCAGTTTGAGGAT GGCTTGAATAGTTGGTCTGGAAGAGGCTGCAAGATTATGTTGCATGATTCAATGGGAGATGGGAAAATTGTTCCGAAGTC TGGGAAGTTCTTTGCATCAGCAACAGAACGCACACAAACCTGGAACGGGATTCAGCAGGATGTAACTGCACATGTGCAGC GCAAGCTGGCCTATGAGGTCACTGCTTTAGTTCGAATATTTGGTAATAATGTTACTAATGCTGATGTAAGAGCTACTTTG TGGGTTCAAACACCAGATCTTCGAGAGCAGTATATAGGCATTGCAAAGTTAGTCTCTTATTTTTGCTATGAAGCATATCA CTTTCATGCTTATTATTCTGGAATATTGATAAACTTAACAAAATGAAACTTTCTACAGTATGATTTGATCATGGCTTTTA TGCATTGGTGATGTTAGAGAGCTCTCTTAACATTTATTTCAATTGCTGAATGAAGTTGGTGTGTTCTGAAGTGTGCAGGC AACAGATAAAGATTGGGTTACAATGCAGGGAAAATTCCTTCTAAATGGCACCCCATCAAAAGTGGTGGTTTATTTAGAGG GCCCCCCTTCTGGCACTGACATTCTTGTCAATACTTTGGTAGTTAAGCATGCAGCAAAAACACCTCCTTCAACTCCACCA GATGTAAAGGTTGGACTTTAGAAACAAGTTTTGTCAATTATTTTAATAATACTAATGTTTTTTTTTTTCTGAAACTGAAT AATACTAATATTTGTGTTTCCTGAAATTGTTTCACACAAGCATTGTTTAAGAACTTTGCTGCTGCCTTATTACACTATAT GTTTCAAGTAACTGTATTCTGCATTCAAAGCCTTATCCCACTAGGTGAGATCGGCTATATGGATCGCTGATCCATATTAA AGATATCAACCAGCATCGTCTGCTGAAGGCCCAACAAAAATTCCCCCTTTATCCAGGCTTAGGACGGGCTATGCAAGCAT AGGCGGAGATTTTTGTTCCAAGTAACTAACAAAGTTGATTTTTGTTTTGCAGAATCTTGCTTTTGGGGTTAATGTCATTG AGAACAGCAATCTGGCTGATGGCACCAACGGATGGTTTCCGCTTGGTAATTGCACTTTAAGTGTTAAAACAGGTTCACCT CATATAATGCCACCAATGGCAAGAGATTCTCTTGGTCCTCATGATCTCCTAAGCGGGCGCTACATCCTCGTAACTGGTCG GACTCAAACATGGATGGGTCCTGCTCAGATAATCACTGAGAAATTGAAACTTTTTGTGACTTACCAAGTATCTGCATGGG TCAGGATTGGTTCAGGATCAAGTGGGCCACAGAATGTGAATGTTGCTCTTGGTGTTGACAACCAATGGGTCAATGGAGGA CAAACGGAGGTTTCTGATGACAGATGGCATGAAATTGGCGGGTCCTTTAGAATTGAACAGCAGCCATCAAAGGTTATGGT TTATATCCAAGGTCCTGCTTCTGGTGTGGATTTAATGGTTGCTGGACTTCAAATTTTTCCTGTTGATAGACATGCAAGGT TTAGATACTTAAGGATGCAGACAGACAAGGTGACATCTAGTTTTCTTGTATAACATATATAATTGATTTTGCAGCATACC TTTACAAACCTATGGGTAGTTCCCAAGATGGCTTGCACTTGAACTGGCTTGAATGAGTAATATTTGGTTGTGAATTACTA TTTGTACCACGGGTTTTCTCCATGCACCAGCAACATCGGGAAATTAATTTCTGGTAGCACGTGGGCTGGTGCAAGGAGAA AAAAATGCGGTACAAATCAAAGTTGTCAGGATCCTGCAATTTGTGGGAGGATTTCCGTTCTGGATCCTCCTAATCGGGCT CTACATCCTTGTACTACAAATAGTAATCCCTCATTTGGGTCACACCCTAGGCCCATTCCCAACACCCAAAGGAAAAATAG GAAGAAAAAAGAAGAACAAATGATCTGCAAATAATGGCCTCCAGAGTGGTAGGTATATGCCTTGAGGTTTTTAGTCACAA CAAGTTTATAATATAACATAGTATTTCTATGTGTTAAAATGGTTAGGAACTTAGGATGCATAGAATTGATACCAGAATAT AGATTAATTTTTTTTACTATTATCTCGTCCACAGGATTACTTATGATACATGTCTTCCCCCTTCCTATTTTATGTTTATA CGATCTTCCAACCCAATTCATGAATTTCCTTATCGCTAGAATCTGCATAATATTTCTGAGAGGAGTGCTAGCAACACACT CTTTTAATAACACACTTCTTGTGTATGGTTTATTTTTTGAAAAGTCACATTTCTCTTACTTTCTTCTTAAATGTGTTGAC CTAAACAAAAAATAAGCCAATCAGGAGGAGTGTGTTATTAAAAAGGAGAAGTGTTATCAACACTCACTTTTCAACACTCA ATGATTTGTTCAAATTTATGTGGGTCCTACTAAGTTGGAAGTGGAGCCTATATGTTTAATGGAGCTCACATGAGTTTCAA CCAATCAATGAGAGACATTTTTCTTATTAAAAGAGTGTGTTGCTATCATTTCTCTATTTCTGATGACTAAACTATACGGT CCCCCTAATATGCACCACTTTAAAAGTAAGGATATTGCCCCATGTCTTAATGCCCCATGTCTTAATAAATGTAACAGCTA AGTATATTCAGACTGGAATGCCTAATTTTTTTATCATATCCATTCTTCATTGATAGAATATGTGGTTCTCTACATTATTT GTATATAAAGTTTTATATCCATTTGCTGCATTGCAGATTCGTAAGCGTGATGTTATTCTGAAATTCTCTGGGGTTGACTC TAGCAACTACATTAACACCATGGTGCAAGTTAGGCAAACACAGAACAATTTCCCAATTGGAACATGCATCAGTAGAATGA ACATTGACAATGAAGATTTCGTTAACTTCTTTGTGAAACATTTCAACTGGGCCGTGTTTGGAAACGAGTTGAAGTGGTAT TGGACTGAGCCACAACAAGGGAATTTCAACTACAAGGATGCTGATGATCTGCTAGACTTGTGCCAAAAGAACAAGATAGA AACTCGCGGACACTGCATCTTCTGGGAAGTGGATGGAACAGTTCAGCAATGGATCAAATCACTGAATCAAAATGATCTGA TGACAGCAGTCCAGAATCGTTTAAATGGTTTGCTGACTCGCTACAAGGGCAAGTTCAGTCACTATGATGTTAACAATGAA ATGCTGCATGGTTCATTTTACCAAGATAGGCTAGGTAAGCAGGGACGGATCCAGGTTGATGCAAAATGGGACAGTCTCAA ATTTTCTTAAGTGTTTAGATGTTACAAAATAATTTATACTGCCTCATTCAATTACTCATTATTTTGCTTCTACCCTTACC AATTTTTTCTCGTTCTGTCCCTATAGGTAGGGATATCAGGGCAAAAATGTTCAAGACAGCAAACCAACTAGATCCATCTG CTACACTGTTTGTGAATGATTACCATGTTGAAGATGGATGTGACAACAAATCATGCCCAGAAAAATACATGGAACATATT CTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGGGTTGGAATTCAAGGCCACATTGATAGTCCAGTGGGGCCTATTGT TTGTTCTTCCCTTGATAAACTGGGAATTCTTGGTCTCCCTATATGGTTCACTGAGCTTGATGTGTCTTCTATCAATGAAC ATGTCAGAGCCGATGATCTTGAAGTTATGTTGCGCGAAGCGATGGCTCACCCTGCGGTAGAAGGCATCATGTTGTGGGGG TTTTGGGAGTTGTTTATGAGCAGGGACAATTCACACTTGGTAAATGCTGAAGGTGACATCAATGAAGCTGGGAAGAGGTT CCTTGATCTGAAACGAGAGTGGTTGTCTCACAAACATGATCATGTTGATGAGCATGGTCAATTCAGCTTCAGAGGCTTTC ATGGAACATACAATGTTGAAGTTGTGACACCAACAAAGAAAATTTCTAAGACTTTTGTGCTTGACAAAGGTGACTCCCCA ATGGTGGTATCCATTGATTTATAA
CDS sequence (LotjaGi5g1v0039300.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGAAACATCTCTGGTCCAACTGTTTGTCAGGGTCCTAATATTTTGCACAATCATGATTTCTCTGGTGGGCTTAA CTCTTGGCATCTCAATTGCTGCAATGGCTATGTAATTTCAGCTGACACAGGTAATCATGGAGGAATTTCAATGGAGTCGG GTGGTAATTATGCAGTTATCACTGACCGAAAGGAATGTTGGCAAGGTCTTGAGCAAGATATCACAGACAGAATATCCATT GGTTCCACTTACACGGTTTCAGCTTGTGTTGGAGTATCTGGGCTTTCTCAGGGATCTGCTGATGTTCTAGCTACTCTGAA ACTAGAATATCATGGTTCAGCTGCTCGTTACATGTTCATTGGAAGAACTTCTGCTATGAAGGGTAGCTGGGAAAAGTTGG AAGGGAAATTCTCATTATCAACTATGCCTGATCGGGCTATATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACATCCTT ATACGATCAGTAGAGATCAACTGTTCCAGTCCAAATAATAATACCACAAGCACAAAATGTGTTACCACAGGAGATGACAA CATCATAATAAACCCCCAGTTTGAGGATGGCTTGAATAGTTGGTCTGGAAGAGGCTGCAAGATTATGTTGCATGATTCAA TGGGAGATGGGAAAATTGTTCCGAAGTCTGGGAAGTTCTTTGCATCAGCAACAGAACGCACACAAACCTGGAACGGGATT CAGCAGGATGTAACTGCACATGTGCAGCGCAAGCTGGCCTATGAGGTCACTGCTTTAGTTCGAATATTTGGTAATAATGT TACTAATGCTGATGTAAGAGCTACTTTGTGGGTTCAAACACCAGATCTTCGAGAGCAGTATATAGGCATTGCAAATGTGC AGGCAACAGATAAAGATTGGGTTACAATGCAGGGAAAATTCCTTCTAAATGGCACCCCATCAAAAGTGGTGGTTTATTTA GAGGGCCCCCCTTCTGGCACTGACATTCTTGTCAATACTTTGGTAGTTAAGCATGCAGCAAAAACACCTCCTTCAACTCC ACCAGATGTAAAGAATCTTGCTTTTGGGGTTAATGTCATTGAGAACAGCAATCTGGCTGATGGCACCAACGGATGGTTTC CGCTTGGTAATTGCACTTTAAGTGTTAAAACAGGTTCACCTCATATAATGCCACCAATGGCAAGAGATTCTCTTGGTCCT CATGATCTCCTAAGCGGGCGCTACATCCTCGTAACTGGTCGGACTCAAACATGGATGGGTCCTGCTCAGATAATCACTGA GAAATTGAAACTTTTTGTGACTTACCAAGTATCTGCATGGGTCAGGATTGGTTCAGGATCAAGTGGGCCACAGAATGTGA ATGTTGCTCTTGGTGTTGACAACCAATGGGTCAATGGAGGACAAACGGAGGTTTCTGATGACAGATGGCATGAAATTGGC GGGTCCTTTAGAATTGAACAGCAGCCATCAAAGGTTATGGTTTATATCCAAGGTCCTGCTTCTGGTGTGGATTTAATGGT TGCTGGACTTCAAATTTTTCCTGTTGATAGACATGCAAGGTTTAGATACTTAAGGATGCAGACAGACAAGATTCGTAAGC GTGATGTTATTCTGAAATTCTCTGGGGTTGACTCTAGCAACTACATTAACACCATGGTGCAAGTTAGGCAAACACAGAAC AATTTCCCAATTGGAACATGCATCAGTAGAATGAACATTGACAATGAAGATTTCGTTAACTTCTTTGTGAAACATTTCAA CTGGGCCGTGTTTGGAAACGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTCAACTACAAGGATGCTGATG ATCTGCTAGACTTGTGCCAAAAGAACAAGATAGAAACTCGCGGACACTGCATCTTCTGGGAAGTGGATGGAACAGTTCAG CAATGGATCAAATCACTGAATCAAAATGATCTGATGACAGCAGTCCAGAATCGTTTAAATGGTTTGCTGACTCGCTACAA GGGCAAGTTCAGTCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAAGATAGGCTAGGTAAGGATATCA GGGCAAAAATGTTCAAGACAGCAAACCAACTAGATCCATCTGCTACACTGTTTGTGAATGATTACCATGTTGAAGATGGA TGTGACAACAAATCATGCCCAGAAAAATACATGGAACATATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGGGT TGGAATTCAAGGCCACATTGATAGTCCAGTGGGGCCTATTGTTTGTTCTTCCCTTGATAAACTGGGAATTCTTGGTCTCC CTATATGGTTCACTGAGCTTGATGTGTCTTCTATCAATGAACATGTCAGAGCCGATGATCTTGAAGTTATGTTGCGCGAA GCGATGGCTCACCCTGCGGTAGAAGGCATCATGTTGTGGGGGTTTTGGGAGTTGTTTATGAGCAGGGACAATTCACACTT GGTAAATGCTGAAGGTGACATCAATGAAGCTGGGAAGAGGTTCCTTGATCTGAAACGAGAGTGGTTGTCTCACAAACATG ATCATGTTGATGAGCATGGTCAATTCAGCTTCAGAGGCTTTCATGGAACATACAATGTTGAAGTTGTGACACCAACAAAG AAAATTTCTAAGACTTTTGTGCTTGACAAAGGTGACTCCCCAATGGTGGTATCCATTGATTTATAA
Protein sequence (LotjaGi5g1v0039300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGNISGPTVCQGPNILHNHDFSGGLNSWHLNCCNGYVISADTGNHGGISMESGGNYAVITDRKECWQGLEQDITDRISI GSTYTVSACVGVSGLSQGSADVLATLKLEYHGSAARYMFIGRTSAMKGSWEKLEGKFSLSTMPDRAIFYLEGPAPGVDIL IRSVEINCSSPNNNTTSTKCVTTGDDNIIINPQFEDGLNSWSGRGCKIMLHDSMGDGKIVPKSGKFFASATERTQTWNGI QQDVTAHVQRKLAYEVTALVRIFGNNVTNADVRATLWVQTPDLREQYIGIANVQATDKDWVTMQGKFLLNGTPSKVVVYL EGPPSGTDILVNTLVVKHAAKTPPSTPPDVKNLAFGVNVIENSNLADGTNGWFPLGNCTLSVKTGSPHIMPPMARDSLGP HDLLSGRYILVTGRTQTWMGPAQIITEKLKLFVTYQVSAWVRIGSGSSGPQNVNVALGVDNQWVNGGQTEVSDDRWHEIG GSFRIEQQPSKVMVYIQGPASGVDLMVAGLQIFPVDRHARFRYLRMQTDKIRKRDVILKFSGVDSSNYINTMVQVRQTQN NFPIGTCISRMNIDNEDFVNFFVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLLDLCQKNKIETRGHCIFWEVDGTVQ QWIKSLNQNDLMTAVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRAKMFKTANQLDPSATLFVNDYHVEDG CDNKSCPEKYMEHILDLQEQGAPVGGVGIQGHIDSPVGPIVCSSLDKLGILGLPIWFTELDVSSINEHVRADDLEVMLRE AMAHPAVEGIMLWGFWELFMSRDNSHLVNAEGDINEAGKRFLDLKREWLSHKHDHVDEHGQFSFRGFHGTYNVEVVTPTK KISKTFVLDKGDSPMVVSIDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 12 | 174 | 163 | 2.0E-33 | ||
| SUPERFAMILY | 13 | 169 | 157 | 3.87E-34 | ||
| Pfam | 15 | 155 | 141 | 5.2E-22 | ||
| PANTHER | 40 | 221 | 182 | 0.0 | – | |
| PANTHER | 40 | 221 | 182 | 0.0 | – | |
| Gene3D | 182 | 339 | 158 | 1.9E-31 | ||
| SUPERFAMILY | 185 | 339 | 155 | 2.42E-36 | ||
| Pfam | 186 | 324 | 139 | 2.9E-19 | ||
| PANTHER | 220 | 901 | 682 | 0.0 | – | |
| PANTHER | 220 | 901 | 682 | 0.0 | – | |
| Gene3D | 355 | 513 | 159 | 2.5E-32 | ||
| SUPERFAMILY | 356 | 516 | 161 | 1.19E-37 | ||
| Pfam | 358 | 501 | 144 | 1.8E-19 | ||
| ProSiteProfiles | 549 | 844 | 296 | 36.654 | ||
| SUPERFAMILY | 550 | 852 | 303 | 1.35E-93 | ||
| Gene3D | 550 | 853 | 304 | 5.9E-73 | – | |
| Pfam | 558 | 815 | 258 | 1.4E-46 | ||
| SMART | 595 | 845 | 251 | 1.4E-10 | ||
| PRINTS | 626 | 638 | 13 | 9.9E-5 | ||
| PRINTS | 708 | 719 | 12 | 9.9E-5 | ||
| PRINTS | 740 | 752 | 13 | 9.9E-5 | ||
| Coils | 827 | 847 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Hydrolase activity, acting on glycosyl bonds | Catalysis of the hydrolysis of any glycosyl bond. |
Expression pattern of LotjaGi5g1v0039300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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