Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0039300 |
| Transcript ID | LotjaGi5g1v0039300.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endo-1,4-beta-xylanase A; TAIR: AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; Swiss-Prot: sp|A3DH97|RSGI6_CLOTH Anti-sigma-I factor RsgI6; TrEMBL-Plants: tr|K7M5U1|K7M5U1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6648960..6654079) extracted from Lotus japonicus Gifu genome v1.2.
CTTGATTTTGTTTAATGTGTTAAATTTTTCCCCCTTTCTTCTGTTTCCGTCCCTGAATGGGGGAGTTCTTCGCGGCGTGT AAAACACACATTCAAAACATATCACAAGCTGTACCATCTAGGTACATAGTTTCTTCTTGGTGTTTAGCACCATTGTTTTC TGATATTGTCTTGTTTGACAGATCATGGCAGGAAACATCTCTGGTCCAACTGTTTGTCAGGGTCCTAATATTTTGCACAA TCATGATTTCTCTGGTGGGCTTAACTCTTGGCATCTCAATTGCTGCAATGGCTATGTAATTTCAGCTGACACAGGTAATC ATGGAGGAATTTCAATGGAGTCGGGTGGTAATTATGCAGTTATCACTGACCGAAAGGAATGTTGGCAAGGTCTTGAGCAA GATATCACAGACAGAATATCCATTGGTTCCACTTACACGGTTTCAGCTTGTGTTGGAGTATCTGGGCTTTCTCAGGGATC TGCTGATGTTCTAGCTACTCTGAAACTAGAATATCATGGTTCAGCTGCTCGTTACATGTTCATTGGAAGGTATAAAACTT ATTTCATTGCATCCTCTTTCTTGTTTTATAGTAGAAAAATGCCATTACATGTTAACCATTGTTTTGTACAGAACTTCTGC TATGAAGGGTAGCTGGGAAAAGTTGGAAGGGAAATTCTCATTATCAACTATGCCTGATCGGGCTATATTTTATTTGGAAG GACCTGCTCCTGGAGTTGACATCCTTATACGATCAGTAGAGATCAACTGTTCCAGTCCAAATAATAATGTATGTCATGAA ATTATGAATTATGAATATTGTTATTTCTTTGGGCAATTTTACATAGTGGCAAATTCTACTATTGTTTGATGAACATCATC TAGCTCATACTTGTGATTTAGTCATTACTTTTTCATTGTATAGATTGATTTTTCTATAAACATGTGCTAGTTTTCTTCTT TTAATTGAACTGTGAAATCTGTGTATTTTTATCACACTAACTTGTGTATTTCTTTCTCTTGTTTCTAAAGACCACAAGCA CAAAATGTGTTACCACAGGAGATGACAACATCATAATAAACCCCCAGTTTGAGGATGGCTTGAATAGTTGGTCTGGAAGA GGCTGCAAGATTATGTTGCATGATTCAATGGGAGATGGGAAAATTGTTCCGAAGTCTGGGAAGTTCTTTGCATCAGCAAC AGAACGCACACAAACCTGGAACGGGATTCAGCAGGATGTAACTGCACATGTGCAGCGCAAGCTGGCCTATGAGGTCACTG CTTTAGTTCGAATATTTGGTAATAATGTTACTAATGCTGATGTAAGAGCTACTTTGTGGGTTCAAACACCAGATCTTCGA GAGCAGTATATAGGCATTGCAAAGTTAGTCTCTTATTTTTGCTATGAAGCATATCACTTTCATGCTTATTATTCTGGAAT ATTGATAAACTTAACAAAATGAAACTTTCTACAGTATGATTTGATCATGGCTTTTATGCATTGGTGATGTTAGAGAGCTC TCTTAACATTTATTTCAATTGCTGAATGAAGTTGGTGTGTTCTGAAGTGTGCAGGCAACAGATAAAGATTGGGTTACAAT GCAGGGAAAATTCCTTCTAAATGGCACCCCATCAAAAGTGGTGGTTTATTTAGAGGGCCCCCCTTCTGGCACTGACATTC TTGTCAATACTTTGGTAGTTAAGCATGCAGCAAAAACACCTCCTTCAACTCCACCAGATGTAAAGGTTGGACTTTAGAAA CAAGTTTTGTCAATTATTTTAATAATACTAATGTTTTTTTTTTTCTGAAACTGAATAATACTAATATTTGTGTTTCCTGA AATTGTTTCACACAAGCATTGTTTAAGAACTTTGCTGCTGCCTTATTACACTATATGTTTCAAGTAACTGTATTCTGCAT TCAAAGCCTTATCCCACTAGGTGAGATCGGCTATATGGATCGCTGATCCATATTAAAGATATCAACCAGCATCGTCTGCT GAAGGCCCAACAAAAATTCCCCCTTTATCCAGGCTTAGGACGGGCTATGCAAGCATAGGCGGAGATTTTTGTTCCAAGTA ACTAACAAAGTTGATTTTTGTTTTGCAGAATCTTGCTTTTGGGGTTAATGTCATTGAGAACAGCAATCTGGCTGATGGCA CCAACGGATGGTTTCCGCTTGGTAATTGCACTTTAAGTGTTAAAACAGGTTCACCTCATATAATGCCACCAATGGCAAGA GATTCTCTTGGTCCTCATGATCTCCTAAGCGGGCGCTACATCCTCGTAACTGGTCGGACTCAAACATGGATGGGTCCTGC TCAGATAATCACTGAGAAATTGAAACTTTTTGTGACTTACCAAGTATCTGCATGGGTCAGGATTGGTTCAGGATCAAGTG GGCCACAGAATGTGAATGTTGCTCTTGGTGTTGACAACCAATGGGTCAATGGAGGACAAACGGAGGTTTCTGATGACAGA TGGCATGAAATTGGCGGGTCCTTTAGAATTGAACAGCAGCCATCAAAGGTTATGGTTTATATCCAAGGTCCTGCTTCTGG TGTGGATTTAATGGTTGCTGGACTTCAAATTTTTCCTGTTGATAGACATGCAAGGTTTAGATACTTAAGGATGCAGACAG ACAAGGTGACATCTAGTTTTCTTGTATAACATATATAATTGATTTTGCAGCATACCTTTACAAACCTATGGGTAGTTCCC AAGATGGCTTGCACTTGAACTGGCTTGAATGAGTAATATTTGGTTGTGAATTACTATTTGTACCACGGGTTTTCTCCATG CACCAGCAACATCGGGAAATTAATTTCTGGTAGCACGTGGGCTGGTGCAAGGAGAAAAAAATGCGGTACAAATCAAAGTT GTCAGGATCCTGCAATTTGTGGGAGGATTTCCGTTCTGGATCCTCCTAATCGGGCTCTACATCCTTGTACTACAAATAGT AATCCCTCATTTGGGTCACACCCTAGGCCCATTCCCAACACCCAAAGGAAAAATAGGAAGAAAAAAGAAGAACAAATGAT CTGCAAATAATGGCCTCCAGAGTGGTAGGTATATGCCTTGAGGTTTTTAGTCACAACAAGTTTATAATATAACATAGTAT TTCTATGTGTTAAAATGGTTAGGAACTTAGGATGCATAGAATTGATACCAGAATATAGATTAATTTTTTTTACTATTATC TCGTCCACAGGATTACTTATGATACATGTCTTCCCCCTTCCTATTTTATGTTTATACGATCTTCCAACCCAATTCATGAA TTTCCTTATCGCTAGAATCTGCATAATATTTCTGAGAGGAGTGCTAGCAACACACTCTTTTAATAACACACTTCTTGTGT ATGGTTTATTTTTTGAAAAGTCACATTTCTCTTACTTTCTTCTTAAATGTGTTGACCTAAACAAAAAATAAGCCAATCAG GAGGAGTGTGTTATTAAAAAGGAGAAGTGTTATCAACACTCACTTTTCAACACTCAATGATTTGTTCAAATTTATGTGGG TCCTACTAAGTTGGAAGTGGAGCCTATATGTTTAATGGAGCTCACATGAGTTTCAACCAATCAATGAGAGACATTTTTCT TATTAAAAGAGTGTGTTGCTATCATTTCTCTATTTCTGATGACTAAACTATACGGTCCCCCTAATATGCACCACTTTAAA AGTAAGGATATTGCCCCATGTCTTAATGCCCCATGTCTTAATAAATGTAACAGCTAAGTATATTCAGACTGGAATGCCTA ATTTTTTTATCATATCCATTCTTCATTGATAGAATATGTGGTTCTCTACATTATTTGTATATAAAGTTTTATATCCATTT GCTGCATTGCAGATTCGTAAGCGTGATGTTATTCTGAAATTCTCTGGGGTTGACTCTAGCAACTACATTAACACCATGGT GCAAGTTAGGCAAACACAGAACAATTTCCCAATTGGAACATGCATCAGTAGAATGAACATTGACAATGAAGATTTCGTTA ACTTCTTTGTGAAACATTTCAACTGGGCCGTGTTTGGAAACGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGGAAT TTCAACTACAAGGATGCTGATGATCTGCTAGACTTGTGCCAAAAGAACAAGATAGAAACTCGCGGACACTGCATCTTCTG GGAAGTGGATGGAACAGTTCAGCAATGGATCAAATCACTGAATCAAAATGATCTGATGACAGCAGTCCAGAATCGTTTAA ATGGTTTGCTGACTCGCTACAAGGGCAAGTTCAGTCACTATGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAA GATAGGCTAGGTAAGCAGGGACGGATCCAGGTTGATGCAAAATGGGACAGTCTCAAATTTTCTTAAGTGTTTAGATGTTA CAAAATAATTTATACTGCCTCATTCAATTACTCATTATTTTGCTTCTACCCTTACCAATTTTTTCTCGTTCTGTCCCTAT AGGTAGGGATATCAGGGCAAAAATGTTCAAGACAGCAAACCAACTAGATCCATCTGCTACACTGTTTGTGAATGATTACC ATGTTGAAGATGGATGTGACAACAAATCATGCCCAGAAAAATACATGGAACATATTCTTGATTTGCAAGAGCAAGGTGCC CCAGTTGGAGGGGTTGGAATTCAAGGCCACATTGATAGTCCAGTGGGGCCTATTGTTTGTTCTTCCCTTGATAAACTGGG AATTCTTGGTCTCCCTATATGGTTCACTGAGCTTGATGTGTCTTCTATCAATGAACATGTCAGAGCCGATGATCTTGAAG TTATGTTGCGCGAAGCGATGGCTCACCCTGCGGTAGAAGGCATCATGTTGTGGGGGTTTTGGGAGTTGTTTATGAGCAGG GACAATTCACACTTGGTAAATGCTGAAGGTGACATCAATGAAGCTGGGAAGAGGTTCCTTGATCTGAAACGAGAGTGGTT GTCTCACAAACATGATCATGTTGATGAGCATGGTCAATTCAGCTTCAGAGGCTTTCATGGAACATACAATGTTGAAGTTG TGACACCAACAAAGAAAATTTCTAAGACTTTTGTGCTTGACAAAGGTGACTCCCCAATGGTGGTATCCATTGATTTATAA
CDS sequence (LotjaGi5g1v0039300.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAGTTCTTCGCGGCGTGTAAAACACACATTCAAAACATATCACAAGCTATCATGGCAGGAAACATCTCTGGTCC AACTGTTTGTCAGGGTCCTAATATTTTGCACAATCATGATTTCTCTGGTGGGCTTAACTCTTGGCATCTCAATTGCTGCA ATGGCTATGTAATTTCAGCTGACACAGGTAATCATGGAGGAATTTCAATGGAGTCGGGTGGTAATTATGCAGTTATCACT GACCGAAAGGAATGTTGGCAAGGTCTTGAGCAAGATATCACAGACAGAATATCCATTGGTTCCACTTACACGGTTTCAGC TTGTGTTGGAGTATCTGGGCTTTCTCAGGGATCTGCTGATGTTCTAGCTACTCTGAAACTAGAATATCATGGTTCAGCTG CTCGTTACATGTTCATTGGAAGAACTTCTGCTATGAAGGGTAGCTGGGAAAAGTTGGAAGGGAAATTCTCATTATCAACT ATGCCTGATCGGGCTATATTTTATTTGGAAGGACCTGCTCCTGGAGTTGACATCCTTATACGATCAGTAGAGATCAACTG TTCCAGTCCAAATAATAATACCACAAGCACAAAATGTGTTACCACAGGAGATGACAACATCATAATAAACCCCCAGTTTG AGGATGGCTTGAATAGTTGGTCTGGAAGAGGCTGCAAGATTATGTTGCATGATTCAATGGGAGATGGGAAAATTGTTCCG AAGTCTGGGAAGTTCTTTGCATCAGCAACAGAACGCACACAAACCTGGAACGGGATTCAGCAGGATGTAACTGCACATGT GCAGCGCAAGCTGGCCTATGAGGTCACTGCTTTAGTTCGAATATTTGGTAATAATGTTACTAATGCTGATGTAAGAGCTA CTTTGTGGGTTCAAACACCAGATCTTCGAGAGCAGTATATAGGCATTGCAAATGTGCAGGCAACAGATAAAGATTGGGTT ACAATGCAGGGAAAATTCCTTCTAAATGGCACCCCATCAAAAGTGGTGGTTTATTTAGAGGGCCCCCCTTCTGGCACTGA CATTCTTGTCAATACTTTGGTAGTTAAGCATGCAGCAAAAACACCTCCTTCAACTCCACCAGATGTAAAGAATCTTGCTT TTGGGGTTAATGTCATTGAGAACAGCAATCTGGCTGATGGCACCAACGGATGGTTTCCGCTTGGTAATTGCACTTTAAGT GTTAAAACAGGTTCACCTCATATAATGCCACCAATGGCAAGAGATTCTCTTGGTCCTCATGATCTCCTAAGCGGGCGCTA CATCCTCGTAACTGGTCGGACTCAAACATGGATGGGTCCTGCTCAGATAATCACTGAGAAATTGAAACTTTTTGTGACTT ACCAAGTATCTGCATGGGTCAGGATTGGTTCAGGATCAAGTGGGCCACAGAATGTGAATGTTGCTCTTGGTGTTGACAAC CAATGGGTCAATGGAGGACAAACGGAGGTTTCTGATGACAGATGGCATGAAATTGGCGGGTCCTTTAGAATTGAACAGCA GCCATCAAAGGTTATGGTTTATATCCAAGGTCCTGCTTCTGGTGTGGATTTAATGGTTGCTGGACTTCAAATTTTTCCTG TTGATAGACATGCAAGGTTTAGATACTTAAGGATGCAGACAGACAAGATTCGTAAGCGTGATGTTATTCTGAAATTCTCT GGGGTTGACTCTAGCAACTACATTAACACCATGGTGCAAGTTAGGCAAACACAGAACAATTTCCCAATTGGAACATGCAT CAGTAGAATGAACATTGACAATGAAGATTTCGTTAACTTCTTTGTGAAACATTTCAACTGGGCCGTGTTTGGAAACGAGT TGAAGTGGTATTGGACTGAGCCACAACAAGGGAATTTCAACTACAAGGATGCTGATGATCTGCTAGACTTGTGCCAAAAG AACAAGATAGAAACTCGCGGACACTGCATCTTCTGGGAAGTGGATGGAACAGTTCAGCAATGGATCAAATCACTGAATCA AAATGATCTGATGACAGCAGTCCAGAATCGTTTAAATGGTTTGCTGACTCGCTACAAGGGCAAGTTCAGTCACTATGATG TTAACAATGAAATGCTGCATGGTTCATTTTACCAAGATAGGCTAGGTAAGGATATCAGGGCAAAAATGTTCAAGACAGCA AACCAACTAGATCCATCTGCTACACTGTTTGTGAATGATTACCATGTTGAAGATGGATGTGACAACAAATCATGCCCAGA AAAATACATGGAACATATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGGGTTGGAATTCAAGGCCACATTGATA GTCCAGTGGGGCCTATTGTTTGTTCTTCCCTTGATAAACTGGGAATTCTTGGTCTCCCTATATGGTTCACTGAGCTTGAT GTGTCTTCTATCAATGAACATGTCAGAGCCGATGATCTTGAAGTTATGTTGCGCGAAGCGATGGCTCACCCTGCGGTAGA AGGCATCATGTTGTGGGGGTTTTGGGAGTTGTTTATGAGCAGGGACAATTCACACTTGGTAAATGCTGAAGGTGACATCA ATGAAGCTGGGAAGAGGTTCCTTGATCTGAAACGAGAGTGGTTGTCTCACAAACATGATCATGTTGATGAGCATGGTCAA TTCAGCTTCAGAGGCTTTCATGGAACATACAATGTTGAAGTTGTGACACCAACAAAGAAAATTTCTAAGACTTTTGTGCT TGACAAAGGTGACTCCCCAATGGTGGTATCCATTGATTTATAA
Protein sequence (LotjaGi5g1v0039300.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEFFAACKTHIQNISQAIMAGNISGPTVCQGPNILHNHDFSGGLNSWHLNCCNGYVISADTGNHGGISMESGGNYAVIT DRKECWQGLEQDITDRISIGSTYTVSACVGVSGLSQGSADVLATLKLEYHGSAARYMFIGRTSAMKGSWEKLEGKFSLST MPDRAIFYLEGPAPGVDILIRSVEINCSSPNNNTTSTKCVTTGDDNIIINPQFEDGLNSWSGRGCKIMLHDSMGDGKIVP KSGKFFASATERTQTWNGIQQDVTAHVQRKLAYEVTALVRIFGNNVTNADVRATLWVQTPDLREQYIGIANVQATDKDWV TMQGKFLLNGTPSKVVVYLEGPPSGTDILVNTLVVKHAAKTPPSTPPDVKNLAFGVNVIENSNLADGTNGWFPLGNCTLS VKTGSPHIMPPMARDSLGPHDLLSGRYILVTGRTQTWMGPAQIITEKLKLFVTYQVSAWVRIGSGSSGPQNVNVALGVDN QWVNGGQTEVSDDRWHEIGGSFRIEQQPSKVMVYIQGPASGVDLMVAGLQIFPVDRHARFRYLRMQTDKIRKRDVILKFS GVDSSNYINTMVQVRQTQNNFPIGTCISRMNIDNEDFVNFFVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDLLDLCQK NKIETRGHCIFWEVDGTVQQWIKSLNQNDLMTAVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRAKMFKTA NQLDPSATLFVNDYHVEDGCDNKSCPEKYMEHILDLQEQGAPVGGVGIQGHIDSPVGPIVCSSLDKLGILGLPIWFTELD VSSINEHVRADDLEVMLREAMAHPAVEGIMLWGFWELFMSRDNSHLVNAEGDINEAGKRFLDLKREWLSHKHDHVDEHGQ FSFRGFHGTYNVEVVTPTKKISKTFVLDKGDSPMVVSIDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 31 | 193 | 163 | 2.0E-33 | ||
| SUPERFAMILY | 32 | 188 | 157 | 4.0E-34 | ||
| Pfam | 34 | 174 | 141 | 5.3E-22 | ||
| PANTHER | 56 | 240 | 185 | 0.0 | – | |
| PANTHER | 56 | 240 | 185 | 0.0 | – | |
| Gene3D | 201 | 358 | 158 | 2.0E-31 | ||
| SUPERFAMILY | 204 | 358 | 155 | 2.51E-36 | ||
| Pfam | 205 | 343 | 139 | 3.0E-19 | ||
| PANTHER | 239 | 920 | 682 | 0.0 | – | |
| PANTHER | 239 | 920 | 682 | 0.0 | – | |
| Gene3D | 374 | 532 | 159 | 2.6E-32 | ||
| SUPERFAMILY | 375 | 535 | 161 | 1.23E-37 | ||
| Pfam | 377 | 520 | 144 | 1.8E-19 | ||
| ProSiteProfiles | 568 | 863 | 296 | 36.654 | ||
| Gene3D | 569 | 872 | 304 | 6.2E-73 | – | |
| SUPERFAMILY | 569 | 871 | 303 | 1.42E-93 | ||
| Pfam | 577 | 834 | 258 | 1.5E-46 | ||
| SMART | 614 | 864 | 251 | 1.4E-10 | ||
| Coils | 846 | 866 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Hydrolase activity, acting on glycosyl bonds | Catalysis of the hydrolysis of any glycosyl bond. |
Expression pattern of LotjaGi5g1v0039300.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…