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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0040000 |
Transcript ID | LotjaGi5g1v0040000.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; TAIR: AT5G11730.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|O31813|YNDJ_BACSU Uncharacterized membrane protein YndJ; TrEMBL-Plants: tr|I1MXD9|I1MXD9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0040000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6716737..6721192) extracted from Lotus japonicus Gifu genome v1.2.
CCCGACTACAAAACGTAATTTTCTAAAAAAAAAAAACAATTGGATGAGAGATGGTGAATCTATCATTTTCTCTTATTTTT TACCTTCTTAAAATAATACTATAACTGCAATTTTACAGCACAGTAAACCGGTAAAAACTGAGAGGCAGCGCCTTGAAGAT TCCAAGTCCTCACAAACATGACTAAAAGGTGGCAACGCTCAACAACAACAACAACAACAAAAACAACCTTAGCCGCTGTC GTGTGTTTCCATTCAGATTCCTCAAATTCATTCACCCTCAATCTATCTCCAAAATCAACGCCTACTAACATTTTCACTTT TTCTTCCTCTCTGACCCTTCCCATTTCACTGTTTCTCATCTCCTGTATCAACTAGCAATTTGGTAAGATCCCACAAACAA AAAATCCAAACTCAGTTTTGTTAATACCCATGTGTTGTAATCTCGTTCTTCATTACATCACATGTTCAAAATTTGACTTT TCTCACCTTAGCACCATTTTTAGATCCATGGCGGTTGTTATAGTTTTTTAGTGATTATGGCTCAATTTTGAATCACATGT GATATATTTCATGCCCTTATATTCATTGATGATCAGAGATCTTAGTTGCATTACCTAGACACAGAGTAGAGGGTGGTTGA CAACTTGACATAGAAGAATTTCTTTTTTTTTTTCATTTTTTTTTTCACTTTTCTGCTTTGATTGCTTTTGGTTTTGGGTT TTGAGCAAGATGCAATCCAGGGTTGTGACCCTTGAAGAAGGAAAGGAAAGAACCAACCAGTCCAAAGGCTTGCCTTTAAG ACCATTGCGGCTACTTGTTCTGTTTATTGCTCTGTGTGTTGTGTTCTCTGTGATCAGCATATACACTATTAAGCATTTTG GGATAGAGAGTGTTGTCACCACAGTCAGCTCAAGTTTTCAGTTTCAACCATGTAATGAGGGACAGGGTGGTTTGGAAAAA TGGATTAGCCCTCCTTCTACATGGATCCACAATATGAGTGACCAAGAATTGCTTTGGAGAGCTTCCTTTGTTCCTCGGAT CAAGGATTACCCTTTTGAAAGAGTTCCCAAGATTGCTTTCATGTTCTTGACAAAAGGACCATTGCCCTTAGCACCACTTT GGGAGAGGTTTCTGAAGGGGCATGAAAGGCATTATTCTGTATATATTCATTCACTGCCATCATATCAAGCTCAGTTTCCT CCTTCTTCTGTCTTTTATAAGAGGCAGATCCCTAGTCAGGTATGGTGATTTAGATCTTATGCTGCCTACAAGCTCATTTT TTCACTTGTAGTTTACTGCCTTGATCTGAAGTTGTGGATACTTAATTGGTGCTAGTTTAGTAGTTTTACATGGTTCATCT ACTATCCTCATATTTTCATGTTTTTTTCTTTGGCCATGTTAATGCCTGTTTTAAGGCTCTGATGAGAATTTTGGTATCAT TGATCATGGCATCTCTGCACTTAATATGGTTATATCTTACTTTCTGAATTCTGTCCAGTGGTGATGCTACTACTTGGTCA GTGCATCAGGTTGTTAGACCTAGGTAAGGACCTAAGGAAGAGGCTGAGGAGGGTATGCAAAATATGCTGGTTTACTATGC TGTGAGTTTTGGTTTCTAACAAGCTTGAGTTAGAAAATTTTAGTAATCTTGTCATGGCAATGCGATTAGAAGAATTTTAA ATTATACTGAGAATATAAAGATGCTGGTAGGATGTATGTGAGCATAGAAACCAGCAGGGATCTGACCAAAGTTATGTGTA CCTAGTTCTATATAAGGACATGACAGAAGTATGTGATAAGAATCAAATAAGATTAATCATTAGTTAAGGTTGAGCTTCCT CCTCGGAAAGGTATGGTGGTAATTGTTAACTATTTATTCTGTTGTCTTTTGTAGTTCTCGTTCAGATGTAGTCTTGATGG ATGGTATGCTCATATTTAGGATTTGACAGGAAGATGGGAAAGTATGTTTAGGAGGTCATCATATTTTATATTTTTAATCA GGGATTTGTTATGGGCCAGTTTTTCTTAAAGTTTAAGCTATTAAGTGATGGCAAAATATTAGTTTCTAGAGCTAGTTGAC CTTATAATGTGGGCGATACACTGGCTCACTCCATCCTAGGCTTATATTCAACTTAATTATGCAGAATAGGAGTGGAAAGG TTATAACTCCATAAGTGCATATCACCTGGTCAGAGGTTCCAATATTATGTCAATGAATAACTCTCCGAAAAACTTATTCT TAGATGAAGACATAAGACTAGTTTTAGATATCAAATAAGGTTCAGGGGTGACTTCACTGCTTTTCATATTACGATTCAAA GGCTAATATACCTGACATCTTGTTAAAGTGACTCATTTAACCAAACATTCCACATTGGCAGGATGACATAAAACTTGGGG TCCCCACTGATTTGGTTAGAAGCTTAGAGCTGAGAATGATCACAAAATTCAATTGCACAGAAACCTGCAGCAAACGGGAA GATCAAATTATTTTAACTAGCTGGTGAATGTTAGGTAAGCTATAAGCCCCCAGTGGGCTGTTTTCTGTTAGTTAAGGGAG TTAGGGTTAGTTTGTGGTAGTTAGTTAGAATTGTAACAGAATTTGACTGAGATAGGCTATGGAGAGGTTGGGGGAGAAGA TTAGGGCGTATTCTATTTAGTTGGAGATTGGTTTTGGAGGGATAGATCTCTGGCTATTGAAATCTTGAGAGGAACAACTT GTTACTAGTATTAATTTTTTCTCTTAATAGCTTATTGATAGAACACAGAAATTAAGAAGAGAAAAGTAAAGGAAGAGAGA GAGAGAGAATTGTTTCCAAAAATAGCTTCTGTATTACTGGAATTAATCAAAGAGAAAATCCCCCCCCCCCAAAGGGTTTT CTCGTTAACACCTAAACTTGAGATAGGTACAAAGAATTAACCAACGAAATGCCTATTCCCTGTACAAGTCTGGTATTTTA CCTCTCCCCCTTAGCAAACCTTCTGACTGCCTAACTCTACTCCTAACTATTGTATTAACTAATCGTTGCTTTTTTGTTCC TTGTAGTATATATCTTCCATAAATGTCCAACCTTTTTTCCTAAGTCCCTATCACTTATGACTAATCTATAAGTTTTTTAA AGCTTATTTTGATAAGCTTCTATAATTAGCTTATGATAACTTTCTCAACACTTAAGAATAAGGTTATATGATAAGCAAGC GCTTTAATTTATCTGTGTACTCAAACGCACCCTATGAACAGGTAGGGAGAGAAGATTAGGGGTAGTCTATTTATTGGAGA TTAGTTTTGGTGTGTACCTCGAACATAAGGGCTTTGGAGGGCCTTACTTTCATCCAAACGTTGAAAATACATGAAAGGCT ATGCTGGCTTTCAATTTATAACAATAGTTTTCTTGTGCAGGTTTCTGAGTGGGGAAGGATGAGCATGTGTGATGCTGAAC GAAGACTACTTGCTAATGCATTGCTTGACATTTCCAATGAGTGGTTTATTCTGCTGTCTGAGTCATGCATCCCTCTTTAT AAATTCAGTTTCATTTACCAATACATAATGAAATCCAAATACAGTTTCATGGGTGCATTTGATGATCCCGGTCCATACGG AAGAGGACGCTATAACGAGAAGATGGCCCCTCTGGTGAACATCACAAAGTGGCGTAAAGGCTCACAATGGTTTGAAATAA ACAGAAAGCTTGCCATCACCATTGTTGAAGACACTACATTTTATCCAAAGTTTGAAACATATTGTAGACCAGCTTGTTAT GTGGATGAGCACTATTTCCCTACCATGTTGACCATTCAAGCAGGGAATGCCTTGGCAAATAGGAGCATTACTTGGGTGGA CTGGTCCAGAGGTGGAGCTCACCCTGCTACCTTTGGAAAAACAGATATTTCAGAGGAGTTTCTGAATCGAGTTCGTGCCG GTCACCATTGCCAATACAACAATGGAAACTCTTCTGCTTGTTTTCTTTTTGCCAGAAAATTTTCTCCTAGTACTTTGGAG CCTTTGTTACATATGGTGGATGCAAAGGTCTTGGACTTCTGAGAAATACTTTTCACTTTTCATTGCTACTGCAGGAAATA TAGATGTAGAAGAAAGACTTTAGAAACTAGCAAGTTTATTACATGGCATGACCATGTGATTGCCTCATTGATGAGTGCTA GGTGGTAGAGATGAATGACCTCACTTTTTCTTACACCGCTGATAGCATGTTTGGAAATCCTTCTACATTTGATTCTAAAG TCAAAATCAATTTCAGGAAGAAGCTTCTTTGAGTATTTTGTGGGCACCAGAATTGTTTCTAAGGAAAAGTTAGATGATTC AAACATGTTATGAGTCATTTTTGAATGTACAAAGGAGACATATTTGATCATACTTTTGTTTAATATTAATTGTTGGATCT TTTTAGTGTGGGTTTTTTTATCCATTGGATTGGAAGTGAATGATTTTTTCTTAATC
CDS sequence (LotjaGi5g1v0040000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCCAGGGTTGTGACCCTTGAAGAAGGAAAGGAAAGAACCAACCAGTCCAAAGGCTTGCCTTTAAGACCATTGCG GCTACTTGTTCTGTTTATTGCTCTGTGTGTTGTGTTCTCTGTGATCAGCATATACACTATTAAGCATTTTGGGATAGAGA GTGTTGTCACCACAGTCAGCTCAAGTTTTCAGTTTCAACCATGTAATGAGGGACAGGGTGGTTTGGAAAAATGGATTAGC CCTCCTTCTACATGGATCCACAATATGAGTGACCAAGAATTGCTTTGGAGAGCTTCCTTTGTTCCTCGGATCAAGGATTA CCCTTTTGAAAGAGTTCCCAAGATTGCTTTCATGTTCTTGACAAAAGGACCATTGCCCTTAGCACCACTTTGGGAGAGGT TTCTGAAGGGGCATGAAAGGCATTATTCTGTATATATTCATTCACTGCCATCATATCAAGCTCAGTTTCCTCCTTCTTCT GTCTTTTATAAGAGGCAGATCCCTAGTCAGGTTTCTGAGTGGGGAAGGATGAGCATGTGTGATGCTGAACGAAGACTACT TGCTAATGCATTGCTTGACATTTCCAATGAGTGGTTTATTCTGCTGTCTGAGTCATGCATCCCTCTTTATAAATTCAGTT TCATTTACCAATACATAATGAAATCCAAATACAGTTTCATGGGTGCATTTGATGATCCCGGTCCATACGGAAGAGGACGC TATAACGAGAAGATGGCCCCTCTGGTGAACATCACAAAGTGGCGTAAAGGCTCACAATGGTTTGAAATAAACAGAAAGCT TGCCATCACCATTGTTGAAGACACTACATTTTATCCAAAGTTTGAAACATATTGTAGACCAGCTTGTTATGTGGATGAGC ACTATTTCCCTACCATGTTGACCATTCAAGCAGGGAATGCCTTGGCAAATAGGAGCATTACTTGGGTGGACTGGTCCAGA GGTGGAGCTCACCCTGCTACCTTTGGAAAAACAGATATTTCAGAGGAGTTTCTGAATCGAGTTCGTGCCGGTCACCATTG CCAATACAACAATGGAAACTCTTCTGCTTGTTTTCTTTTTGCCAGAAAATTTTCTCCTAGTACTTTGGAGCCTTTGTTAC ATATGGTGGATGCAAAGGTCTTGGACTTCTGA
Protein sequence (LotjaGi5g1v0040000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSRVVTLEEGKERTNQSKGLPLRPLRLLVLFIALCVVFSVISIYTIKHFGIESVVTTVSSSFQFQPCNEGQGGLEKWIS PPSTWIHNMSDQELLWRASFVPRIKDYPFERVPKIAFMFLTKGPLPLAPLWERFLKGHERHYSVYIHSLPSYQAQFPPSS VFYKRQIPSQVSEWGRMSMCDAERRLLANALLDISNEWFILLSESCIPLYKFSFIYQYIMKSKYSFMGAFDDPGPYGRGR YNEKMAPLVNITKWRKGSQWFEINRKLAITIVEDTTFYPKFETYCRPACYVDEHYFPTMLTIQAGNALANRSITWVDWSR GGAHPATFGKTDISEEFLNRVRAGHHCQYNNGNSSACFLFARKFSPSTLEPLLHMVDAKVLDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 27 | 27 | - | – | |
PANTHER | 12 | 376 | 365 | 8.1E-195 | – | |
PANTHER | 12 | 376 | 365 | 8.1E-195 | – | |
TMHMM | 25 | 47 | 23 | - | – | |
Phobius | 28 | 47 | 20 | - | – | |
Phobius | 48 | 383 | 336 | - | – | |
Pfam | 115 | 341 | 227 | 1.1E-84 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi5g1v0040000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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