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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0043100 |
| Transcript ID | LotjaGi5g1v0043100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT1G55110.1 indeterminate(ID)-domain 7; Swiss-Prot: sp|Q8H1F5|IDD7_ARATH Protein indeterminate-domain 7; TrEMBL-Plants: tr|A0A1J7GRR5|A0A1J7GRR5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0043100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:7261361..7265133) extracted from Lotus japonicus Gifu genome v1.2.
CGGCAATCAAATAATTGAACTATTAGTATTGTTTGAATGTTTTATAATTTATGATATAGAAAAGAAAAAATAAGGAAAAG ACCGAAAGTGCACTAGAACAAGCCTGTTTTGGCTTGTGTTTTGGTCTTGTAGGTGGGAGCTTCAAAAGCATCATTTCCTC ATCCACATTATTCTATGCTCTTCTGTATCTCCCCAGCCCCTTCATACACACAGTACAGTCAACTGAAATTTCTACAGCCT CTTGAAGCACACTTGGATGTTAGCTAGTTACAAGAAAGAGGTGACTGTTTAAGACCTAGTGTTGCTAGCTAGCTTTCTAG ATTTGGTTGTGAATAGATTTGAAGATAATATCCATCTCGGGATCCATCCTCACCTTTCTCAGTTTTTTCTCTTCTTTTTC TCCATCTGGTGTTATCTAGAATCTGAAAGGTTGAAGAATATAGATCAGATCCTTAGTTTGCTTTCTCATCTAGTTCAGAT CCACTTTTAATCTTTTTCACTTCCTTTTTATAAAAGCTACTACTAGCTAGTAATTTTTTTCATAATCATTTTCTCCTTCA AACCGAATTTTGAGACATAAAAGATGAAGAGAGGTATGGTGGTGGATGAAAATATGTCCAATTTGACATCAGCATCAAGT GAAGTAAGTGCTTCTTCAGAAATCAGGAATGAAAACGGTTCTCTCTATCCTCAGCTCTACTCCTCCAATGCTACAAATCA AGAACCACAACCCAAGAGGAAGAGAAGCCTTCCAGGCCACCCAGGTAATCAATCAGACCAATACTCTATTTTATTTTCTT TAATTGATGGTATAATATAGTCCATATTTGGAAACTCATTCGAAAAATAATTAAACCACCGTAAAGCTAAAAACTATCGT GGACAGAAGCAAAAGTTAAGTGAAATTGTTTCTATCAAGCCAAGATTTTGGTTCTACCGCGGTTTCCTAACGAGTTTTCA AACATGAACGTAAAGGGTTTGTTTGGTGCAAAAATTAACATTTGTTTCTTATAATTACTCAATCATTAGCATGTTTAGAT CAATTTTTCGTTCATCAAAATTAATTTAGAACTCAAAAGCTATTCATAGAATTGGTTTTTCTTTTAGAATCAACTGGAGC AAGATTTCCAAACATGCATATTAATTGTTTTATAAATGAATAATGTTGTTTTATTATTTTTTTTTCCAACTGTTGTTCCT TTCAGATCCTGAGGCTGAAGTGATGGCCTTGAGTCCCCAGACACTCATGGCAACGAACAGGTTCATTTGTGAGATTTGCA ACAAAGGGTTTAGAAGAGATCAGAATCTGCAGCTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTGAAGAAAAGAAAT GGCAATGAACCAATAAGAAGGAAAGTGTATGTGTGCCCAGAGCCAACATGCGTTCACCATGACCCATCAAGGGCCCTTGG AGACTTAACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAGTGTTCCAAGCGTT ATGCAGTTCAATCAGATTGGAAAGCCCACTCCAAAGTTTGTGGCACCAGAGAGTATAGATGTGACTGTGGAACCCTCTTC TCCAGGTAACAATTAATCTCAATAGTTTTAATTTTGGTTACACAGCATAATTAAATCTTCATATCAGTAATGTTTATTCA TAACTTCATTAGAAAAAAATGGGTTAAAATAAGCTTAAAGTATCATATATATAAAAATTTGTAAGTATACACACTTGTTC ATAAGGAATAGTGAGAAAAACTTTCAAAATAATTAAGCTTAAAAAGCATGTAAAATCTTTTAGAATTGAATCACTTCTTC CCAGACAAAATACATTCATCTTCCTAGTTCTTACACCAAATCTATTCATTAATTAGGTAATATTAGATTTCAAAACAAAC TGTATATAAATTGATATATATACATTCCTCATTTTTTTTCTCTGTCTATCACTTTTTATTATATCACAGCATCTTTATTA TTTTTCTCTATTTTTTTTATAATTTCTCACTCTAAACTATACACTCATTGAGTGGGATCTGCCCCAACAATTTCCACGGT GAAAAGTGCTTCAAGTATTATTATCCATTTTGTATTAATCATAATTAGAAATACAAATAGTGTAGACGTTTAACATATAT GACTAATTTTTCTCCATATATCAATATTTTTATCACATTTATTATATATCATATCAACTACCGCTCTCTATTCTCTTCCT TTCTCAAGGGTCTAATATTGGATAATCAGGTTACCTATCCATTTTGTCTTTTTTACTGTTTGTTTCTTGTGGTTGCAGGA GGGACAGTTTTATCACTCACAGAGCCTTCTGTGATGCTTTAGCACATGACAGCACTAGTGCAATCACAGCACTGAACCCT CTACTCTCCTCTCACACTCAAATTCTCAGCCACATGCACAGTAGCAATGGCCTTCAAGCACCACCAGTGAAAAGAGAGCA AGACTTCAATCTAAGACCAGAAATTCCCTCATGGTTGGCTTGCTCTACATCAGTTCCACCACCACCATTACTCCAAACCC ATTTGGACCAGTCTTTTGTTATCCACCATGAAAACCCTAACCCTAGTACAACCTTGCTTCCTCATCATCTCAACAACTCC ACTAGTTCGAATTATCCTCACATGTCAGCCACTGATTTCCTGCAAAAGGCATCACAAATAGGTGTAACAGTGAGCAAAAC AACAACACCATCACCATCACCATTCATGCTTAGACCCCACATGATGATGCAGCAGCAGGTTCACGTGCCTGAAATGGTTA TGGCTTCATCTTCAGCTGTTTCTGGAATAGTTATGCCTTCACGTGATGAAATAGGAACTGGTGGTTATTTTACTCATGGC TTGGCTTCTTATGGGAATAAAGCTGCAATCACCTCTGGCTACTTTGAAGCTGATCAAGCATCTTGTCTTTACCATGATAT GATGGGTGGTACTGTGCCTCAAACCTATGAGAGGGATATGTTTATGAGGGTTTCCCATCAACAGGTCCTCGGTTCGAAAC CAGCAGAATCTACTCAAGAGATGTTTATGAGGGGAATGTTTAACCCAACAAGAGATGCTGATGATGGTAACTTCGAATAT GAACTTGTTTCCAAATCAACACAACCCCAGTTTAGTAAAAGTGACAAGGTTTCTTCAGGTGGTGCCGGTGATGATGAAAT GACAAGGGATTTTCTGAGTCTGAGAGCGTTTTCTCATATGTCTGGGCTTGATCCTTTGGGTTCTTTATCATATGGCAAGC AAAATCATGACCATGCACAATGGCAAGGCTAATCGGGTTTGTAAATTAAATGCATGTCGGTGAAATATGACAAAATCACA ATAGACAAAAACAACTTTCATTCGGCGACTGCCATCAAAGAGTAGGATCCTTGAAGCTTATGGCAGGCATCAATGGCCCT CAAGAGTAAAGATCTGCATTTTGACGTGGCAATAAGATGGAGTACAACCTCGGTATCAGAAGTCGTGTTGATCAAAATGG ATTCATTATCTTCAACTTTGGCCTTTAAGGTGCCATAATTGGCTACCAGAAACTACCGGTCATAAAAGTCTACTTTTCAA TTTTTCATTTCAAACATCGAAACAATATTCAAACACTCCTTATCAGATTCACTACCATATAAAAACACGGACTGCAATCA TTTTCATGCATGTATTTATCTCATGCTCATACCAATATGACACAATTTTATTGGTAGAACTGGAAGGTGGACATCATCTC TCTTCATCTTAAA
CDS sequence (LotjaGi5g1v0043100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGAGGTATGGTGGTGGATGAAAATATGTCCAATTTGACATCAGCATCAAGTGAAGTAAGTGCTTCTTCAGAAAT CAGGAATGAAAACGGTTCTCTCTATCCTCAGCTCTACTCCTCCAATGCTACAAATCAAGAACCACAACCCAAGAGGAAGA GAAGCCTTCCAGGCCACCCAGATCCTGAGGCTGAAGTGATGGCCTTGAGTCCCCAGACACTCATGGCAACGAACAGGTTC ATTTGTGAGATTTGCAACAAAGGGTTTAGAAGAGATCAGAATCTGCAGCTTCATAGAAGAGGGCATAATTTGCCATGGAA GCTGAAGAAAAGAAATGGCAATGAACCAATAAGAAGGAAAGTGTATGTGTGCCCAGAGCCAACATGCGTTCACCATGACC CATCAAGGGCCCTTGGAGACTTAACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGGGAGAAGAAATGGAAGTGTGAG AAGTGTTCCAAGCGTTATGCAGTTCAATCAGATTGGAAAGCCCACTCCAAAGTTTGTGGCACCAGAGAGTATAGATGTGA CTGTGGAACCCTCTTCTCCAGGAGGGACAGTTTTATCACTCACAGAGCCTTCTGTGATGCTTTAGCACATGACAGCACTA GTGCAATCACAGCACTGAACCCTCTACTCTCCTCTCACACTCAAATTCTCAGCCACATGCACAGTAGCAATGGCCTTCAA GCACCACCAGTGAAAAGAGAGCAAGACTTCAATCTAAGACCAGAAATTCCCTCATGGTTGGCTTGCTCTACATCAGTTCC ACCACCACCATTACTCCAAACCCATTTGGACCAGTCTTTTGTTATCCACCATGAAAACCCTAACCCTAGTACAACCTTGC TTCCTCATCATCTCAACAACTCCACTAGTTCGAATTATCCTCACATGTCAGCCACTGATTTCCTGCAAAAGGCATCACAA ATAGGTGTAACAGTGAGCAAAACAACAACACCATCACCATCACCATTCATGCTTAGACCCCACATGATGATGCAGCAGCA GGTTCACGTGCCTGAAATGGTTATGGCTTCATCTTCAGCTGTTTCTGGAATAGTTATGCCTTCACGTGATGAAATAGGAA CTGGTGGTTATTTTACTCATGGCTTGGCTTCTTATGGGAATAAAGCTGCAATCACCTCTGGCTACTTTGAAGCTGATCAA GCATCTTGTCTTTACCATGATATGATGGGTGGTACTGTGCCTCAAACCTATGAGAGGGATATGTTTATGAGGGTTTCCCA TCAACAGGTCCTCGGTTCGAAACCAGCAGAATCTACTCAAGAGATGTTTATGAGGGGAATGTTTAACCCAACAAGAGATG CTGATGATGGTAACTTCGAATATGAACTTGTTTCCAAATCAACACAACCCCAGTTTAGTAAAAGTGACAAGGTTTCTTCA GGTGGTGCCGGTGATGATGAAATGACAAGGGATTTTCTGAGTCTGAGAGCGTTTTCTCATATGTCTGGGCTTGATCCTTT GGGTTCTTTATCATATGGCAAGCAAAATCATGACCATGCACAATGGCAAGGCTAA
Protein sequence (LotjaGi5g1v0043100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRGMVVDENMSNLTSASSEVSASSEIRNENGSLYPQLYSSNATNQEPQPKRKRSLPGHPDPEAEVMALSPQTLMATNRF ICEICNKGFRRDQNLQLHRRGHNLPWKLKKRNGNEPIRRKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCE KCSKRYAVQSDWKAHSKVCGTREYRCDCGTLFSRRDSFITHRAFCDALAHDSTSAITALNPLLSSHTQILSHMHSSNGLQ APPVKREQDFNLRPEIPSWLACSTSVPPPPLLQTHLDQSFVIHHENPNPSTTLLPHHLNNSTSSNYPHMSATDFLQKASQ IGVTVSKTTTPSPSPFMLRPHMMMQQQVHVPEMVMASSSAVSGIVMPSRDEIGTGGYFTHGLASYGNKAAITSGYFEADQ ASCLYHDMMGGTVPQTYERDMFMRVSHQQVLGSKPAESTQEMFMRGMFNPTRDADDGNFEYELVSKSTQPQFSKSDKVSS GGAGDDEMTRDFLSLRAFSHMSGLDPLGSLSYGKQNHDHAQWQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 64 | 64 | - | – | |
| MobiDBLite | 9 | 51 | 43 | - | – | |
| PANTHER | 10 | 503 | 494 | 4.2E-172 | – | |
| PANTHER | 10 | 503 | 494 | 4.2E-172 | – | |
| Gene3D | 76 | 103 | 28 | 1.8E-5 | – | |
| SUPERFAMILY | 79 | 177 | 99 | 1.36E-7 | ||
| ProSiteProfiles | 80 | 102 | 23 | 10.928 | ||
| Pfam | 80 | 102 | 23 | 0.0023 | ||
| SMART | 80 | 102 | 23 | 0.012 | ||
| ProSitePatterns | 82 | 102 | 21 | - | ||
| Gene3D | 117 | 205 | 89 | 2.5E-6 | – | |
| SMART | 122 | 152 | 31 | 97.0 | ||
| SMART | 157 | 177 | 21 | 130.0 | ||
| MobiDBLite | 465 | 485 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0043100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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