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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0043700 |
| Transcript ID | LotjaGi5g1v0043700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | zinc transporter; TAIR: AT1G60960.1 iron regulated transporter 3; Swiss-Prot: sp|Q8LE59|IRT3_ARATH Fe(2+) transport protein 3, chloroplastic; TrEMBL-Plants: tr|Q6VM17|Q6VM17_MEDTR Metal transport protein; Found in the gene: LotjaGi5g1v0043700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:7378085..7384896) extracted from Lotus japonicus Gifu genome v1.2.
CGAAATAATGACGACATTCAATGCTCTTGTTCACTGCAAAATGTGCAATGTACTATCCATCACTCCACCGCTTCCTCTCA CTTCTCTGTCCTCTTTTTCTTATAACCTCTCTTATGACGACACTTTATTCCTCTTCTTCTTTTTTTCCTTCCCTTCAAAC TCTTTATATTATTCTCCAGCACTTCACCACTTCCAACTTCATTTCACCACATACCCATGCTTTTGTGCTTTTTCCTCAAA TTCATGTTCCCCGCATATATACCATTAACCTTAAACACACGCATCCCTTTGACTCCACAATCTAAAATCTTCCCATGTTT CTATTCGAGGTTTCTTGTCTTCTTGTCCCTCCCTCTCTTCATTTTCAATTTTAACTTCTTATAACAGTTTCTAATCCGTT ACTACATCATTACCTTATTCTTCACTTTCAGGATCTCTGGCTATTGCAACGCCTCGACCATGCCGTCGCAAAATCTCGTC TCTTTTCAGGTACTTGCTTCATTCATTTCATTTCATCAAGATTTTGACGGTTAGAACAACAACACGAATACATATCGTGA TGAGAAAGAAATACACGAAAGCTTTATTCACACAGTTCGATCAAATTGCCTAAGTCGAACGAATTTCAAATGTTACTGCT CATGTTGTTTACTTGATTATTACTTTCATTCCACTCCCTCAAAATTAAATTAAAAAATGTAAATTTTATTGTAATTAATC TTCAATTTTTATTCAAATAATTGATTTTGTTCATATTGGATTTTGATTTTTGATAGAATCAATTTTGGAATCTGTACATG ATTTCACGACGAACCCTAGCTGCGAAGGAAGCGAATCAGATGCGTGTCGTGACGAGTCAACGGCTTTGGCGCTGAAATTC GTGGCCATGGCGGCGATTCTGGTGGCGGGATTCGCGGGAATTTTGATTCCGTTGGTCGGGAAGCACCGGCGGCTTCTGCG CCGTGACGGGGAGGTTGTTGCGGCGGCGAAGGCGTTTGCGGCGGGGGTGATTCTCGCGACGGGGTTCGTTCACATGTTGA CGGACTCGTGGGAGGCGCTGAACCACCCTTGTCTACGGCGGTACACGTGGACGCGGTTTCCGTTTACGGGATTCTTCGCG ATGCTGGCGGCGTTGCTTACTCTGTTGGTTGATTTTGTGGCGACTCAGTATTATGAGCGGCGGCAGGGTGGTGGTGGTGA GGGGCGGGGGAGGGTGGTTGACGGTGGCGGTGACGCTGAGGAGGAGGAGGAGGAGGGGATTGTGGAGGTGGTTAGGGAAG AGGGAATGCACGTTGTGGGGGTGCATGCTCACGCGGCGCACCATGGACATTCCCATTTGTGCCACGGTGGCGAAAAGGAA ACGCACAGTGGGGGCCACGTTCACTCTCACTCGTTCGGAGGTGGTGATGACGTGGATTCTAGCGTCCGCCACGTCGTCGT TTCACAGGTAACTTACTCCCTTTTTTTTTTTCAGTGCACAAGTAACAAACATGAAACATCCCTCTTTTAATATTAAGCAA ATTCAGTTTTTATGATATATTATGTTACACTAAACTACTTTCAACTAAACTCAAATTTTTACTGTCGAGTGGTAGCTCAA GTGTAAGAGTTAGGAGAGATATGAGTTGGAGTGGCGGAGGTCCAAGGGTCAATCCGTGGATGGTGAAATTTATCTTTTTA ATTAAAAAAAACTCAAACTCAAGTTCGACACACTCATTTTTTTAAATTTTGACTAAATATTCCCTTCATTTTGTATTACA TGTTGAGACTTTTGGTTAGTTTATAATAGTAAGAGGCACTGCATTTGATGGGGCACAAGCCTTCCAAATGCACTTGAATG CAGGCACCTCTGATGTAGCTCCCATTGTCAAATGGGTTTTGACTTTGGAATGCCACCAAATAGAAAAACAACAAATAGTT CAAAGTGCTTAACGTAGATGACACTCAGGACACTACGCGTGCTTTGCTTCAGTTTTTTTATTGAGTTTTACTAATTGCAT GTACTTTTTTAGAAAAATATAATTCAAGTTGTTTTTGTTGCCGTCGTTCAATTATATGATATTTTAATGTGGTTTTTTCC TGATTGACTATCAATCATCCATCGTTCATTACGTGCAAGTATCATTTTTAGTCCATTGTTGTTTGGTCACAAAGTAGATA TGCTTCATGCCTCCACCCAACAAATTTTAGTTTAATTTTTGGAAAATCTGATGGCTAGCCGTGATCAGTGATCTACGGGA AAGTTGGGTTGTCAAATAGAATCAATTTCATTTCACATACACACTTTCTAACTCCGTACTGATTATCATTCTTAAACAAT TCTTAAACTTGCTTTTATTTTAATAATTCAGACCATGCCTAACTCTAAAAAAAATGTTGATTGTCATATATTTAGTCAGA ATTATTTAAGTCATATATTTAGTTGGCCTGAGACACTAACGATCTGTTTGAAAGAGTCTATTTAAATTTATTTTATAATA TAAAGTATAAACTCATATTTAAGGGTTTGAGATGACATATGTAAACATCCTATGACTTTTTAACCTTATTTTAATAAGCT CTTAAGAGTAGCATATAAAAAAGACCTTATACTTTTCAATAATCTATTTTAAACTTATTTAAAAAAGTTTTTTAAATTAA CTTATGATTAAGCGCCTATGCGATAAACGTTTATGCCATAAGCGTTTAATTAAATTGTTTACCTAAATGCACACCTTATA TAGTATTTAACTATTTGGTGACAATTTTGAGCATGCGCACCCTTCAAGTACGGAAAAAAGTTTTAATCTTCAAAAATTCA ACAAATTGACCAACAATTTGAAAAATATGCTGACTTTTTATAAAATAAATCAATCACGTGAATAGAAAGGGTTAAAAGAG ATTGAGGAGAGAGGGGTTGCTATCCTCGTTTGGAAGAACAGAGAAGGGTGAGCGAGGGATTTAAAGGTAGTGTATTTGAA GATTTTTTGACGGTGATCTTCTCATGTCTAAAACTTCTAATGTTGAAATTTTGTGTTTATCTATTTCTTCATTTGCATTC ATGTTTTCTCATGATGAACAAGGATGACAAAGTTCTTGTATCCACGGATACCCGCAAAGGGTAGATAATGAGTACTCACG GGTGGTCATGGAGATCACAATGTATACCCGCCCCGCAGATACCAGCATATTCATTACATTTGCTTTATATTAATTATAGC GAGCACTCCCTCTGGTCTTTAATATAAGAACCAAACTGGGGGTATAACTTAGTCTTTTATATAAGAACTGTTCCGTACTA GGGAGATCTGACGTCGGAAACTGACAGAAAGTAAACCCTAGCAGAGTACTAAAAATATCACAAAAGGAATATTCTCATTA AATGTTCGAAAGGTGCTTTTTACAAGGGGTTGACCTCTCCTTTTATAGAGGGAATGGTCATAACGTGGACTTTCTCTGTA CTTGGGCCTGACAATCGGGGCCCAAGCCTCTATACATATAAGACAAAACTAAAGGAATTCTTCCAGCTGGCGCGTGGACC CATCCAAAAGAAGGGCGGGCTTCGACGTTGTTCCACAAACCCCGCCATGGCTGCTTTCGTTCATCTAAATGCTCGATTTG GGCGGGAATAAGGGATACTTATGTCCCGCCCCGTCCACATGCCCCGAAGACATGAGGCTTAAGTAAGTTGAGTCGAAATG TCTTTATACGTTGCTTCGTCGCCTGCCTTTGTCATTTACCTCGTTCTTCTGATAATTGTGTCGCCGTTCTTTCATTTGTG TAGGTGACATGAGACTTAGGTTCTTTGAGCCGAGACGTCTTTACAGTATATCGCCATCCTTTGTAGTCATGGGCCTGTCG TCGCTTTCTCGCCTTTTCATGTTCCTTTATATGTCGCCATTTTTTATCTTTGTCGATACATCGCCGTTATCACACCTGTC AATCACGTCTTTTCAACTGACGCACGTATCCTTCTTTTCCGGGATTTTGTTATCATTTGCCATAAATGCAGTTGTGCGTC TCGATGAGTTATGTCTTTTCGTTTCATACCTTTTCAAATTTCAAATCCCACGATCCCACGATCCCACGATCCCACGACCC TTCGCAGTCTTTCCCACTCATTCTCTCTCTTCCTTTTTCTTCTATAAATACCCTTTTCACCTTTCACTTTTCACTTTTCT GAAAACCTTTACTCTGAAAAAAAAAACTTTTCATCGTAGCTTTCACTCTCTTCTTTGTTCTCTGGTGAACCTTGCTCACT CCGGCCGTCGTCATTGCGCGGTGCTCCCCCATCGCCGACGTTATCTTTACTCAATCCTCCGCTTCTTCCTCCGGTGAGTC CTTCCCCTTTCTCTTTTCTTGACACTGTGTCTTCTTCTTTCTTTGTGTTTGGACCTGTTCATCTTCTTTTTTATTTTTAT GAAATTACCCAGCATGTCGACACAAAATTTTAGCATTTCCTCCTTAGAGCTCACTTCCCCTTCTACGGAGGGGGAAGTTT CTGCCCCCACCGTTATCGTAATACAATCCTCGCCCTCCACTCACGAGGATTCCGGTCCCGCCGGCTCCGTTGATTCTATT CTCTCCTCTAATGGAGATTTGTCTTCACCCGAATGGCGTTCCAACGTGCATTTGGTTGAAGATAAGTGTCTTTGGCGCTC CATCTGGGGTAGCCTTGGAAGCATCAGTTCGCTTCGAATATCTTCTCAAGGGTTTACAAAGATAAATCCCGCCACCTCTA ATAACGAAGATCACCTGTTAAATGTTCTTCCCTGTGGCGAGGATGATTGCGTTCTTTTACGCAAGGAACCTACTGATGAA TCGCCCGATTTCTTTTTTGTTTATGGTTATTTTTTCTTGGATTTGAATATCAAACTCACAGTTTATGGTGCATTAGTTAT GTTTTGACATGAATACCCTTATTTAATGCATAGAAATTAAAAAGTTGACATAAGTAATTTTGGAAAGTTTACAAAATTTG AGAACAATTTTAATACAATTAACTAAATTAATTAGATTTCTTAAGGGACGTGAAGTAGATGTTTGATTCTTATATTAAGG ATTAGAGAGACTATATCATAATTTTCCTATCCTTTCAAGATGGAATATATTATATTTTATCATTAAAAAACAATTTTAGT GAGTGAAATCAATATAATGAAATTTTCAATAGTTATTATTCACAAGAATATCCAAGGATACCCGCTATCCGCATGAATTC TCGCTAACCGTGATAGGTACGGGGAAGTACTATCCGCACCTATTCTGCCCCATTATCATCCCTAAAGTTGAAGAGTGTCT TTAAAAGAGTGTTATATTAACATTTTTCATTCTTTAAATTTTTTTGAAATAATCTGATGTCCAACTTCTTTTTTTTTTGG TCGACTTAAAATGCAGGTTTTGGAACTTGGGATTGTATCACACTCCATAATAATTGGGCTATCCCTAGGTGTTTCTCAAA GCCCATGTACCATGAGGCCCCTAATTGCAGCACTATCCTTCCACCAATTCTTTGAAGGTTTTGCACTCGGTGGGTGCATC TCCGAAGCCCAATTCAAGACATTATCAGCAACCATAATGGCTTGTTTTTTTGGACTCACAACGCCATTGGGTGTTGCCAT TGGAACCGCTATTTCCTCTAATTTTAACCCTCATAGTCCTGGAGCACTCATCACAGAAGGCATCTTGGACGCGTTCTCAG CTGGGATCTTAGTGTACATGGCTCTGGTGGATTTAATAGCTGCGGATTTTCTTAGCAAGAGAATGCGTTGTGACTTTAGG CTGCAGATAGTTTCATACTGTTTGCTTTTCCTTGGAGCTGGATCGATGTCTTCACTAGCAATGTGGGCATGATCCTTTTC AGTGATTTTGTATTATAATTTGTATATTTTTCAATGTTTGATAGGTGCTGGTCGCGGTGGTAGATAGTACTTGTTCGACC TATAAATTACTATCGCATAATTGGAACTGGATGTGGTTGAAAGTAGTTTTTCAATGCCTGATGGGAGAACTTTGATTTTC ACCATATCCAATTCAAATTGCGATAGTAATTTATATCACCAAAAATATTAATTTATTTCTCAATATTGACCTAACTCTTG ATCCGAGAAGATAGGTTACAAGAAAATGTAAGCTTCATAATTCAGGCAAAGTGTCAGATGTAGCTCCATTAGTGGGTCAG CGGATCAAATGTTTGCAAAGCTGTGGAAGATTAAAACAATGCCAAATGTGCTTTCCCTAGCTTGGCGAGTACTGCTAAAT CGAATTCAAACGAGGGGAAACTTAAATAAAAGGGTTGTCAATTTTTTTTTGGTACATCGAAAAGTTAAATTACATTATCT AAGAATTGAACCTTGGACTTTTCCATTCCCAGCCCATATGTCCCCAGCTCTTGCCACATGAGCTATCCTCGGGGACTAAA GGGTTGTTAATTTGAAGCTATATATTTATCACCATGGGACTGGCTTTGAAGCTATTTATCTGTTGTTTTTCAAACTGGGC ATAAGCTATTGCAGGGGATGGGAATTTAATAGGGAATGACTATCTCTTGGATTAGAAAGTGTAGGCAGTTACACGTTCTG AATTGAATAGGTCTGTTATCTAACCTCTTGAGTCTTGACTTGGTTAGTGCTTGATTTATACTTTGTAATGGGTTCTGACA CCCGTTATGCTCCTTATAGTTGGATTTTGCCTATAACAAAGCCAACCTCTTTTAAAAAAAAAAGACATGGATATGAGATT TACTTCAATTTACTCTAGACACTAAATAAGTGAATTAAGGTGCATTCTATCTTGTCAAACTGCTTTTGGTATTTTTCAAC GAAAGAAAAGGG
CDS sequence (LotjaGi5g1v0043700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTATTCGAGGATCTCTGGCTATTGCAACGCCTCGACCATGCCGTCGCAAAATCTCGTCTCTTTTCAGAATCAAT TTTGGAATCTGTACATGATTTCACGACGAACCCTAGCTGCGAAGGAAGCGAATCAGATGCGTGTCGTGACGAGTCAACGG CTTTGGCGCTGAAATTCGTGGCCATGGCGGCGATTCTGGTGGCGGGATTCGCGGGAATTTTGATTCCGTTGGTCGGGAAG CACCGGCGGCTTCTGCGCCGTGACGGGGAGGTTGTTGCGGCGGCGAAGGCGTTTGCGGCGGGGGTGATTCTCGCGACGGG GTTCGTTCACATGTTGACGGACTCGTGGGAGGCGCTGAACCACCCTTGTCTACGGCGGTACACGTGGACGCGGTTTCCGT TTACGGGATTCTTCGCGATGCTGGCGGCGTTGCTTACTCTGTTGGTTGATTTTGTGGCGACTCAGTATTATGAGCGGCGG CAGGGTGGTGGTGGTGAGGGGCGGGGGAGGGTGGTTGACGGTGGCGGTGACGCTGAGGAGGAGGAGGAGGAGGGGATTGT GGAGGTGGTTAGGGAAGAGGGAATGCACGTTGTGGGGGTGCATGCTCACGCGGCGCACCATGGACATTCCCATTTGTGCC ACGGTGGCGAAAAGGAAACGCACAGTGGGGGCCACGTTCACTCTCACTCGTTCGGAGGTGGTGATGACGTGGATTCTAGC GTCCGCCACGTCGTCGTTTCACAGGTTTTGGAACTTGGGATTGTATCACACTCCATAATAATTGGGCTATCCCTAGGTGT TTCTCAAAGCCCATGTACCATGAGGCCCCTAATTGCAGCACTATCCTTCCACCAATTCTTTGAAGGTTTTGCACTCGGTG GGTGCATCTCCGAAGCCCAATTCAAGACATTATCAGCAACCATAATGGCTTGTTTTTTTGGACTCACAACGCCATTGGGT GTTGCCATTGGAACCGCTATTTCCTCTAATTTTAACCCTCATAGTCCTGGAGCACTCATCACAGAAGGCATCTTGGACGC GTTCTCAGCTGGGATCTTAGTGTACATGGCTCTGGTGGATTTAATAGCTGCGGATTTTCTTAGCAAGAGAATGCGTTGTG ACTTTAGGCTGCAGATAGTTTCATACTGTTTGCTTTTCCTTGGAGCTGGATCGATGTCTTCACTAGCAATGTGGGCATGA
Protein sequence (LotjaGi5g1v0043700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLFEDLWLLQRLDHAVAKSRLFSESILESVHDFTTNPSCEGSESDACRDESTALALKFVAMAAILVAGFAGILIPLVGK HRRLLRRDGEVVAAAKAFAAGVILATGFVHMLTDSWEALNHPCLRRYTWTRFPFTGFFAMLAALLTLLVDFVATQYYERR QGGGGEGRGRVVDGGGDAEEEEEEGIVEVVREEGMHVVGVHAHAAHHGHSHLCHGGEKETHSGGHVHSHSFGGGDDVDSS VRHVVVSQVLELGIVSHSIIIGLSLGVSQSPCTMRPLIAALSFHQFFEGFALGGCISEAQFKTLSATIMACFFGLTTPLG VAIGTAISSNFNPHSPGALITEGILDAFSAGILVYMALVDLIAADFLSKRMRCDFRLQIVSYCLLFLGAGSMSSLAMWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 58 | 58 | - | – | |
| PANTHER | 35 | 399 | 365 | 1.9E-175 | – | |
| PANTHER | 35 | 399 | 365 | 1.9E-175 | – | |
| TIGRFAM | 40 | 399 | 360 | 1.4E-132 | ||
| Pfam | 56 | 396 | 341 | 2.6E-75 | ||
| Phobius | 59 | 79 | 21 | - | – | |
| TMHMM | 59 | 78 | 20 | - | – | |
| Phobius | 80 | 90 | 11 | - | – | |
| TMHMM | 90 | 112 | 23 | - | – | |
| Phobius | 91 | 112 | 22 | - | – | |
| Phobius | 113 | 131 | 19 | - | – | |
| TMHMM | 127 | 149 | 23 | - | – | |
| Phobius | 132 | 153 | 22 | - | – | |
| Phobius | 154 | 305 | 152 | - | – | |
| TMHMM | 305 | 327 | 23 | - | – | |
| Phobius | 306 | 327 | 22 | - | – | |
| Phobius | 328 | 346 | 19 | - | – | |
| TMHMM | 337 | 359 | 23 | - | – | |
| Phobius | 347 | 367 | 21 | - | – | |
| Phobius | 368 | 378 | 11 | - | – | |
| TMHMM | 379 | 398 | 20 | - | – | |
| Phobius | 379 | 398 | 20 | - | – | |
| Phobius | 399 | 399 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion transmembrane transporter activity | Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Zinc ion transmembrane transport | A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi5g1v0043700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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