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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0047200 |
| Transcript ID | LotjaGi5g1v0047200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat-shock protein, putative; TAIR: AT5G12020.1 17.6 kDa class II heat shock protein; Swiss-Prot: sp|P05477|HSP21_SOYBN 17.9 kDa class II heat shock protein; TrEMBL-Plants: tr|A0A0B2RVG9|A0A0B2RVG9_GLYSO 17.9 kDa class II heat shock protein; Found in the gene: LotjaGi5g1v0047200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:7941721..7942519) extracted from Lotus japonicus Gifu genome v1.2.
AAATTACCATACCCACACGCTCTCTCTCAACACCAAGAATCAGAAATCAAAATTGTAAAAGCAAAGAAAGATCAAACACT TGATAATTTCACCTTCTCGAGAGTCATGGACTTCAGGTTGATGGGTTTGGATTCTCCATTGTTCCACAATCTCCACCACA TGATGGACATGTCGGATGACACCGCGTTGGACAATAAGACACACAATGCTCCGACAAGGACTTATGTTCGAGATGCGAAG GCAATGGCGGCAACACCTGCGGACGTGAAAGAGAATCCGAATTCGTACGTTTTCGTGATCGACATGCCGGGGTTGAAATC AGGGGACATTAAGGTTCAGGTGGAAGATGACAATGTGCTTGTGATAACTGGTGAGAGGAAGAGGGAGGAAGAGAAAGAAG GGGTTAAGTATTTGAGGATGGAGAGAAGGGTTGGCAAATTCATGCGCAAATTCGTGCTTCCTGAGAATGCCAACATTGAT GCTGTTTCTGCTGTGTGCCAAGATGGGGTACTCAGTGTCACTGTGCAGAAATTGCCACCACCTGAGCCTAAGAAGCCAAG GACTATTGAAGTTAAGATTGCTTGACCTTGTTCAAGAAACAGGGGAATGTGATGTTGGCTCTGTTTTGTTTGGGTGTGTG TTTTCTCAACTTTATGTTTTGTAATGATCTTGAAGGCTTGGTTGCACTAATGAATGTGATGTTTCATTTTTCTATTTGTC ATTCATGTCTAAGTTATAGTTAAGATTCACTCTGCTTTCTAATTTCTATCTTATTACATACGAATTCTAGTTTAGCCAG
CDS sequence (LotjaGi5g1v0047200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTTCAGGTTGATGGGTTTGGATTCTCCATTGTTCCACAATCTCCACCACATGATGGACATGTCGGATGACACCGC GTTGGACAATAAGACACACAATGCTCCGACAAGGACTTATGTTCGAGATGCGAAGGCAATGGCGGCAACACCTGCGGACG TGAAAGAGAATCCGAATTCGTACGTTTTCGTGATCGACATGCCGGGGTTGAAATCAGGGGACATTAAGGTTCAGGTGGAA GATGACAATGTGCTTGTGATAACTGGTGAGAGGAAGAGGGAGGAAGAGAAAGAAGGGGTTAAGTATTTGAGGATGGAGAG AAGGGTTGGCAAATTCATGCGCAAATTCGTGCTTCCTGAGAATGCCAACATTGATGCTGTTTCTGCTGTGTGCCAAGATG GGGTACTCAGTGTCACTGTGCAGAAATTGCCACCACCTGAGCCTAAGAAGCCAAGGACTATTGAAGTTAAGATTGCTTGA
Protein sequence (LotjaGi5g1v0047200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFRLMGLDSPLFHNLHHMMDMSDDTALDNKTHNAPTRTYVRDAKAMAATPADVKENPNSYVFVIDMPGLKSGDIKVQVE DDNVLVITGERKREEEKEGVKYLRMERRVGKFMRKFVLPENANIDAVSAVCQDGVLSVTVQKLPPPEPKKPRTIEVKIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 158 | 152 | 1.8E-95 | – | |
| PANTHER | 7 | 158 | 152 | 1.8E-95 | ||
| Gene3D | 9 | 158 | 150 | 1.2E-38 | ||
| SUPERFAMILY | 15 | 151 | 137 | 2.23E-38 | ||
| ProSiteProfiles | 43 | 157 | 115 | 30.393 | ||
| Pfam | 53 | 157 | 105 | 5.3E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0047200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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