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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0048100 |
| Transcript ID | LotjaGi5g1v0048100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Harbinger transposase-derived nuclease; TAIR: AT5G12010.1 nuclease; Swiss-Prot: sp|Q94K49|ALP1_ARATH Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1; TrEMBL-Plants: tr|A0A0L9V0U2|A0A0L9V0U2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0048100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8070613..8072259) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAACTCCCTACCTTCGCAGACCCAGAATCACTTTCTTACGTTTACACCTTGCTACAAAGTTCATTTGACCAAATGAA TGACCCCAACAACAACAACAACAACAATTACAACAACAACAATAGCAGTGCTACCTCTGTAAACACCAGAAAGCGACGCA GAAAAGTGAAAGGTGATGATGATGTTGGTGGTGATGAAATTCCCAGCAACAATCGTGAAGAGGAAGAAGGAGATAACAAG AGCAAAAACAAGAAGGAAGAATTGAAGGGTATCCTTACTTCTCTGCTTTTACTCGATGAGCAAGAGAAGGTTGAGCAGGA TCATCAAATCAAGGATTCAGAGGATGAGAAGTTCTCATTGGAAACCAACCATAAGAAGAAAACCAAAGCTATGATTCAGT ACTACACTAATCTAGATGATTATTACGGCCAGGTGGAAGAATCAGAGCGAGTTCAGAGGAAGAAAAGCAGGAACATGGCA AATTCTGTAGCTGTTGCTGCTGCAGGAGGGAGTGAAGCGTTGGAATTGGAAGAAGGAAACGGTGAAGGGGTTGTCAAATC TGGTGGTGGTGGAGGTGGAGGTCCACAAAGGAGGCTATGGGTGAAGGATCGTTCTGGGGCATGGTGGGATGAATGTAATA CACCTGATTTTCCTGAAGAAGAGTTTAAGAAAGCATTCAGAATGGGAAGGTCAACTTTTGATTTGATCTGTGAGGAGCTG AATTCAGCTATTGTGAAAGAGGACACCACTTTGAGGAATGCTATCCCAGTGAGGCAGAGAGTTGCGGTTTGTCTTTGGAG GCTCGCGACCGGGGACCCTCTTAGGATTGTGTCTAAGAGGTTTGGTTTGGGGATTTCAACTTGCCATAAGCTGGTTCTTG AGGTTTGTACCGCGATAAAGACGGTGTTGATGCCGAAGTATCTGCAGTGGCCTGATGAGGCTGCATTGAGGAAAATTAAG GGTGATTTCGAGTCGGTTTCGGGGATTCCTAATGTGGTGGGATCGATGTACACATCTCATGTTCCTATCATAGCACCAAA AATTAGTGTGGCGGACTATTTCAACAAGAGGCACACGGAGAGGAATCAGAAGACTTCGTACTCGATCACGGTTCAGGGTG TTGTGGACTCAAGAGGGGTATTCACTGATGTTTGCATTGGTTGGCCCGGATCAATGTCGGATGATCGGGTGTTGGAGAAG TCTGCTCTTTTCCAAAGGGCTAATGGAGGGCTTCTTAAGGGGATGTGGATTGTTGGGAGCTCAGGGTACCCTCTGATGGA TTGGGTTTTGGTGCCCTACACTCAGCAGCACCTTACTTGGACTCAGCACGCTTTCAATGAGAAGATTGGGGAGGTTCAGA AGGCCGCGAAGGATGCATTCGCGAGGCTAAAAGGGAGGTGGAGTTGCTTGCAGAAAAGGACAGAGGTGAAGCTGCAAGAT TTGCCTATTGTACTCGGGGCATGTTGTGTGTTGCACAACATTTGCGAGATGAAGGGTGATAAAATAGACCCTGACTTGAA GCTTGATCTTGTTGATGATGAAATGGTGCCCGAGGTTGCTTTGAGATCAGTGAGCTCCATGAAAGCTAGGGATGCTATTG CTCATAATCTTTTGCACCATGGCCTAGCAGGCACTTCTTTTCTATGA
CDS sequence (LotjaGi5g1v0048100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCCCAACAACAACAACAACAACAATTACAACAACAACAATAGATGATGATGTTGGTGGTGATGAAATTCCCAGCAA CAATCGTGAAGAGGAAGAAGGAGATAACAAGAGCAAAAACAAGAAGGAAGAATTGAAGGGTATCCTTACTTCTCTGCTTT TACTCGATGAGCAAGAGAAGGTTGAGCAGGATCATCAAATCAAGGATTCAGAGGATGAGAAGTTCTCATTGGAAACCAAC CATAAGAAGAAAACCAAAGCTATGATTCAGTACTACACTAATCTAGATGATTATTACGGCCAGGTGGAAGAATCAGAGCG AGTTCAGAGGAAGAAAAGCAGGAACATGGCAAATTCTGTAGCTGTTGCTGCTGCAGGAGGGAGTGAAGCGTTGGAATTGG AAGAAGGAAACGGTGAAGGGGTTGTCAAATCTGGTGGTGGTGGAGGTGGAGGTCCACAAAGGAGGCTATGGGTGAAGGAT CGTTCTGGGGCATGGTGGGATGAATGTAATACACCTGATTTTCCTGAAGAAGAGTTTAAGAAAGCATTCAGAATGGGAAG GTCAACTTTTGATTTGATCTGTGAGGAGCTGAATTCAGCTATTGTGAAAGAGGACACCACTTTGAGGAATGCTATCCCAG TGAGGCAGAGAGTTGCGGTTTGTCTTTGGAGGCTCGCGACCGGGGACCCTCTTAGGATTGTGTCTAAGAGGTTTGGTTTG GGGATTTCAACTTGCCATAAGCTGGTTCTTGAGGTTTGTACCGCGATAAAGACGGTGTTGATGCCGAAGTATCTGCAGTG GCCTGATGAGGCTGCATTGAGGAAAATTAAGGGTGATTTCGAGTCGGTTTCGGGGATTCCTAATGTGGTGGGATCGATGT ACACATCTCATGTTCCTATCATAGCACCAAAAATTAGTGTGGCGGACTATTTCAACAAGAGGCACACGGAGAGGAATCAG AAGACTTCGTACTCGATCACGGTTCAGGGTGTTGTGGACTCAAGAGGGGTATTCACTGATGTTTGCATTGGTTGGCCCGG ATCAATGTCGGATGATCGGGTGTTGGAGAAGTCTGCTCTTTTCCAAAGGGCTAATGGAGGGCTTCTTAAGGGGATGTGGA TTGTTGGGAGCTCAGGGTACCCTCTGATGGATTGGGTTTTGGTGCCCTACACTCAGCAGCACCTTACTTGGACTCAGCAC GCTTTCAATGAGAAGATTGGGGAGGTTCAGAAGGCCGCGAAGGATGCATTCGCGAGGCTAAAAGGGAGGTGGAGTTGCTT GCAGAAAAGGACAGAGGTGAAGCTGCAAGATTTGCCTATTGTACTCGGGGCATGTTGTGTGTTGCACAACATTTGCGAGA TGAAGGGTGATAAAATAGACCCTGACTTGAAGCTTGATCTTGTTGATGATGAAATGGTGCCCGAGGTTGCTTTGAGATCA GTGAGCTCCATGAAAGCTAGGGATGCTATTGCTCATAATCTTTTGCACCATGGCCTAGCAGGCACTTCTTTTCTATGA
Protein sequence (LotjaGi5g1v0048100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTPTTTTTTITTTTIDDDVGGDEIPSNNREEEEGDNKSKNKKEELKGILTSLLLLDEQEKVEQDHQIKDSEDEKFSLETN HKKKTKAMIQYYTNLDDYYGQVEESERVQRKKSRNMANSVAVAAAGGSEALELEEGNGEGVVKSGGGGGGGPQRRLWVKD RSGAWWDECNTPDFPEEEFKKAFRMGRSTFDLICEELNSAIVKEDTTLRNAIPVRQRVAVCLWRLATGDPLRIVSKRFGL GISTCHKLVLEVCTAIKTVLMPKYLQWPDEAALRKIKGDFESVSGIPNVVGSMYTSHVPIIAPKISVADYFNKRHTERNQ KTSYSITVQGVVDSRGVFTDVCIGWPGSMSDDRVLEKSALFQRANGGLLKGMWIVGSSGYPLMDWVLVPYTQQHLTWTQH AFNEKIGEVQKAAKDAFARLKGRWSCLQKRTEVKLQDLPIVLGACCVLHNICEMKGDKIDPDLKLDLVDDEMVPEVALRS VSSMKARDAIAHNLLHHGLAGTSFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 43 | 43 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 22 | 43 | 22 | - | – | |
| PANTHER | 28 | 495 | 468 | 1.1E-248 | – | |
| PANTHER | 28 | 495 | 468 | 1.1E-248 | – | |
| Pfam | 294 | 450 | 157 | 2.9E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0048100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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