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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0049600 |
| Transcript ID | LotjaGi5g1v0049600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT4G33160.2 F-box family protein; Swiss-Prot: sp|Q9SMZ3|FBX13_ARATH F-box only protein 13; TrEMBL-Plants: tr|C6TD64|C6TD64_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0049600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8361681..8364166) extracted from Lotus japonicus Gifu genome v1.2.
TAATCTATAATATGAAAATCCTACGTCAGAATCCATTGACTGAAAATGTAACTTAGTTACCCACCCGTGTGAGGCTTGTG CGTGTACCCTGTCTTTTGAGTGAGAGAATCAAAGTGTCAACCATCCAACCCCAACATAGAAAAGAGACCCCCGCGAAGCT TCCTATCTCTTGAGCAAGCTCACTTTCCCTTTTTCACTTTTCAGATTTCCTTCTTCAAACCAAACCCCATTTTAAACACA CTATCCAACACCAGCTATATATAATTATTGTGTTCTGCTTATGCAACACACTCCTCACCGTGTGCTTTGTTTTCCTTTCC GCTCAACAAAGCAGCAGCTTCTGTTTCTTTTGCATTTTGAGTCTCAAGTTTTATGTTGGTTTCTAAAGGATAGATTGTTA AGCTATGAGGGTCATTTCAAGTTTGCAGCTTTAGGCCCCGTTTGGAAGAGCTTATTTAGCTTATATGATACCTTAAACGC TTGTGTAAGTGTTTGTGAGAGCTTATGCAAATAGCTTACGGTAGGCCATTAGTTCATGATAGCTTATGAACAAAAATCTT ATGCTATAGCTTATTTTCAATTTATTTCAATAAATTTTTATAAATAGCTTATGAATAAGCGCTTATGTCAGAAGCACTCA TGGTCGCTTATGACCATAAGCACTTAATTAAGCTATTTCCAGAAGCCTTGCAATTTCCATTGCAAATCTTGAAGGGGTTG GGGAAGGAAAGTGAAAGTCTTGATCTTTTGCGTGTGGGTAACCTTTAGATTGTTGGTTTTAGGCCACCCTTTTTCATTAT ATGGAATCCGTTTGTATGGCAACCATATAGCACTTTCAACTTCAAGCAGATAAGCCCTAATAAGCTCCAATAAGTTTGCA TCCACAGCTCATAATTTTGGTTCAATTTCAGTGTCTTTATTTACATCATTTGGTTTCTATGTTTAAAAATGGAAAAAATT GATTTCTTTTATAATGTCTTATTGGTCCCTTTGTTTGTGCAGTTGTTTTCTCCAAATTTGTGGTCAATGGAACATAGTTT GAAAAGAAAGTACCCTGAAAATGGAGAACAACTATTCTTCAACAGTTTTTCCCTCGATGACCTTAACGGAGATCTTTTTG AAAGGGTGCTTTCATGGCTACCAACTTCCAGTTTCCTCCGCCTTACTTCGGTGTCCAAAAGATGGAAATCGGCTGCTGCT TCTCCGAGTTTCAAGCTCACCTGCTCGCACATTCCTTCGCGCGATCCTTGGTTTTTTATGGTTGCACCCAGCCTTAACCA ATCTGTTATCTTTGATTCTGCTGAAAACAGTTGGAAAAGGCTCAATCATCCCAGTCCTCTGCGTGACGATTCTAACAGAA GTTGCATGCCTGTTGCAGCCTCTGGTGGCCTGGTTTGCTACCGCAAATGGTCCGGAGACTTCATTGTTTGTAATCCGGTG ACCGGATCTTGCAGTGAACTCCCTCCATTGCATCTTTCGTTGGAAAATCAATCTCTCAATGCTGTTGTTATGAGTAAAAC ATCCAAAGACCAATTGTCCTACAAGATTATATTAGTCTTTGGTGAACTCCCAAATATTTTGTTTAAAGTCTACAACTCAA GCTCTGGTTGTTGGGAAGATGAGACTGCACTTAGCAGAAAATTTGATGATAATACCGTGGATTGTGATTCAAATGATGAC AATGTTGTGTACTTCCTCAGCAAAGCTGGAAATGTTGTGACGAGTAGTATGCAGAGAAGCCCGTCTAAGCAATATTCATC GGTAATTGCTAACAAAGACGGTGAGGAGATAGTCTATTTTCTTAGTTCCACGGGTATGGTCATCGCTTGCAATTTGACAT GCAAGTGCTTCTTTGAGTACCCTATGTTATTGCCTGTTTTTAGTGAGTACTCCATTGATGTTGTGGAGTGTGATGGTGAG ATGCTAGTTGTTTTGTTATCGGAATTCTTCGAAACTGTGAGTCTTAGAGTGTGGAAATATGATGAGGCTAATCAATGCTG GCAACAGATTGCAGTGATGCCTGCAGCAATATCCCATAAGTGGTTTGGAAAGAAGGCAGATATTAATTGTGTCGGAGCCG GTGACCGGATATTCATATGCTTAAACTCCCCGGCGTTATGCACTTACATTATGTGCGATTTGGCAACCAACAAATGGGTT GAATTGCCAAAATGTTGCATAAATGGGGAAATCATGGAGTTCATGTCTGCATTTTCAGTTGAGCCGAGGATAGAGGCTTC TGTGTGAGTGACAATAAAATGCCATATCATGGTATCTTGATTTTGGTTACCATCCTTTACTGTGATCTGTTAGCTTAAAT TTTCTTTATTTGTACTTAATTTTTCATGCAAAATAGCTAGTACTGGTAGAGATTGGTATGAAAAATTGGAGATGGAAGCT AACCAAATGATTGATTGCTAACTGATATATTGTAATTTACTTCATTGATCTTTAGATGTACACTGTATTCAGTGATTGGT ATTAAT
CDS sequence (LotjaGi5g1v0049600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACACACTCCTCACCGTGTGCTTTGTTTTCCTTTCCGCTCAACAAAGCAGCAGCTTCTGTTTCTTTTGCATTTTGA GTCTCAAGTTTTATGTTGGTTTCTAAAGGATAGATTGTTAAGCTATGAGGGTCATTTCAAGTTTGCAGCTTTAGGCCCCG TTTGGAAGAGCTTATTTAGCTTATATGATACCTTAAACGCTTGTTTGTTTTCTCCAAATTTGTGGTCAATGGAACATAGT TTGAAAAGAAAGTACCCTGAAAATGGAGAACAACTATTCTTCAACAGTTTTTCCCTCGATGACCTTAACGGAGATCTTTT TGAAAGGGTGCTTTCATGGCTACCAACTTCCAGTTTCCTCCGCCTTACTTCGGTGTCCAAAAGATGGAAATCGGCTGCTG CTTCTCCGAGTTTCAAGCTCACCTGCTCGCACATTCCTTCGCGCGATCCTTGGTTTTTTATGGTTGCACCCAGCCTTAAC CAATCTGTTATCTTTGATTCTGCTGAAAACAGTTGGAAAAGGCTCAATCATCCCAGTCCTCTGCGTGACGATTCTAACAG AAGTTGCATGCCTGTTGCAGCCTCTGGTGGCCTGGTTTGCTACCGCAAATGGTCCGGAGACTTCATTGTTTGTAATCCGG TGACCGGATCTTGCAGTGAACTCCCTCCATTGCATCTTTCGTTGGAAAATCAATCTCTCAATGCTGTTGTTATGAGTAAA ACATCCAAAGACCAATTGTCCTACAAGATTATATTAGTCTTTGGTGAACTCCCAAATATTTTGTTTAAAGTCTACAACTC AAGCTCTGGTTGTTGGGAAGATGAGACTGCACTTAGCAGAAAATTTGATGATAATACCGTGGATTGTGATTCAAATGATG ACAATGTTGTGTACTTCCTCAGCAAAGCTGGAAATGTTGTGACGAGTAGTATGCAGAGAAGCCCGTCTAAGCAATATTCA TCGGTAATTGCTAACAAAGACGGTGAGGAGATAGTCTATTTTCTTAGTTCCACGGGTATGGTCATCGCTTGCAATTTGAC ATGCAAGTGCTTCTTTGAGTACCCTATGTTATTGCCTGTTTTTAGTGAGTACTCCATTGATGTTGTGGAGTGTGATGGTG AGATGCTAGTTGTTTTGTTATCGGAATTCTTCGAAACTGTGAGTCTTAGAGTGTGGAAATATGATGAGGCTAATCAATGC TGGCAACAGATTGCAGTGATGCCTGCAGCAATATCCCATAAGTGGTTTGGAAAGAAGGCAGATATTAATTGTGTCGGAGC CGGTGACCGGATATTCATATGCTTAAACTCCCCGGCGTTATGCACTTACATTATGTGCGATTTGGCAACCAACAAATGGG TTGAATTGCCAAAATGTTGCATAAATGGGGAAATCATGGAGTTCATGTCTGCATTTTCAGTTGAGCCGAGGATAGAGGCT TCTGTGTGA
Protein sequence (LotjaGi5g1v0049600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQHTPHRVLCFPFRSTKQQLLFLLHFESQVLCWFLKDRLLSYEGHFKFAALGPVWKSLFSLYDTLNACLFSPNLWSMEHS LKRKYPENGEQLFFNSFSLDDLNGDLFERVLSWLPTSSFLRLTSVSKRWKSAAASPSFKLTCSHIPSRDPWFFMVAPSLN QSVIFDSAENSWKRLNHPSPLRDDSNRSCMPVAASGGLVCYRKWSGDFIVCNPVTGSCSELPPLHLSLENQSLNAVVMSK TSKDQLSYKIILVFGELPNILFKVYNSSSGCWEDETALSRKFDDNTVDCDSNDDNVVYFLSKAGNVVTSSMQRSPSKQYS SVIANKDGEEIVYFLSSTGMVIACNLTCKCFFEYPMLLPVFSEYSIDVVECDGEMLVVLLSEFFETVSLRVWKYDEANQC WQQIAVMPAAISHKWFGKKADINCVGAGDRIFICLNSPALCTYIMCDLATNKWVELPKCCINGEIMEFMSAFSVEPRIEA SV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 81 | 481 | 401 | 4.4E-148 | – | |
| PANTHER | 81 | 481 | 401 | 4.4E-148 | – | |
| Gene3D | 93 | 254 | 162 | 2.5E-5 | ||
| ProSiteProfiles | 96 | 141 | 46 | 9.259 | ||
| Pfam | 97 | 142 | 46 | 8.6E-8 | ||
| SUPERFAMILY | 97 | 155 | 59 | 4.45E-10 | ||
| SMART | 102 | 142 | 41 | 0.0012 | ||
| SUPERFAMILY | 158 | 459 | 302 | 6.41E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0049600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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