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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0050000 |
| Transcript ID | LotjaGi5g1v0050000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G65770.1 ascorbic acid mannose pathway regulator 1; Swiss-Prot: sp|Q9SHX9|FB72_ARATH Putative F-box protein At1g65770; TrEMBL-Plants: tr|G7KT89|G7KT89_MEDTR F-box protein; Found in the gene: LotjaGi5g1v0050000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8427589..8428797) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAATGAAAAAGCTAGCTGCTTACAATTTGCTTCCTTGGGATGATCTTGCTATTATTTGCAAGAAACTAAATTTCAAT GACATATTCCAACTTTCTGCAGTGTGCAAGGACTGGAGGTCATTTTTTAAAAGTTACTGGAAAAACTCCATGGAATTTCA ATCACCATTAATTGTTCAAAGAGCTTCATTTTCGAAAAAATCTCTTTCATTTATTAGCCTATCTGACAACATGTCCTATA GTGCTCAGATGGATAACTTTTGGAGCTTATCATACTCTTGTTCTTCTAGTGGATATCTGATTTTTGTTGGTCCTAATATG TTTATGCTAATGAATCCTTTGACCAGAAGAGGAAAGAAAATCAGCACCTTAGCTCTGAAAGATAATGATGACTACAGGGG TAGCCGTGCCCATTTTGCTTTTGTCAAAGGTTCAAAGGAATATGTCCTCGTGTTTTTTTCTAATGGTTCTTGTAGGTTGA ATGTCTATCAATCCCAGAATTCATGTTGGGCTATTTATTCTACCAAAGGAGATCCATTGCAGGTTGTGGACCTTGTGGTT TTTCAAAATTCTATATATGTTCTTACTAACAAGGCCAAGATAGGGGTACTTAACCTGAATTCTACAAGTTTAAAATTTGT AGAGCTGAAGAACACTCCTTCGATAACTTATAATGACCTTAGGTTGGTTAGTTGTGATGGAAACCTTTTAATGGTCCATT TTGTGCCTGGGAAAATGTTGAACATGTACAGGATAGACTTCTCAACTATGGAGTTTGTCAGAATGGACACATTGGGTGAG CTAGCATTATTTTATTCACCCTATGCAAACTGTTATGCATTGAGCAACCCAAGAAGGTGGGGATATGACAGCAACACTTT GTATTCAATTACCTGCTCATTTCCAGAATATAAAGTGTATTCAGGGAATGGAAAACTGCAAAACCACATTAGGCCTGATC GTGGACTTCAAGTTCCTAAGAGATCCATACTTTACTGGGTGGATTGGTATTTGCCACATCTGCGGGATGAGGTGGATTAT TCTCTGGTCGAATAATTTTCTTATTAAACACCATGTTGCTTGAGACAAATTTCTTTAGACGTTGTTCCTTTCATTGAATT TTTCCAGTGTACTAATTTAATTGTACTGGAAAAAGACTTGTAATTTCCTTTTGTTTGTTATTGATTTGACTAGACTTGAT AAACTTGTC
CDS sequence (LotjaGi5g1v0050000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAAGCTAGCTGCTTACAATTTGCTTCCTTGGGATGATCTTGCTATTATTTGCAAGAAACTAAATTTCAATGACAT ATTCCAACTTTCTGCAGTGTGCAAGGACTGGAGGTCATTTTTTAAAAGTTACTGGAAAAACTCCATGGAATTTCAATCAC CATTAATTGTTCAAAGAGCTTCATTTTCGAAAAAATCTCTTTCATTTATTAGCCTATCTGACAACATGTCCTATAGTGCT CAGATGGATAACTTTTGGAGCTTATCATACTCTTGTTCTTCTAGTGGATATCTGATTTTTGTTGGTCCTAATATGTTTAT GCTAATGAATCCTTTGACCAGAAGAGGAAAGAAAATCAGCACCTTAGCTCTGAAAGATAATGATGACTACAGGGGTAGCC GTGCCCATTTTGCTTTTGTCAAAGGTTCAAAGGAATATGTCCTCGTGTTTTTTTCTAATGGTTCTTGTAGGTTGAATGTC TATCAATCCCAGAATTCATGTTGGGCTATTTATTCTACCAAAGGAGATCCATTGCAGGTTGTGGACCTTGTGGTTTTTCA AAATTCTATATATGTTCTTACTAACAAGGCCAAGATAGGGGTACTTAACCTGAATTCTACAAGTTTAAAATTTGTAGAGC TGAAGAACACTCCTTCGATAACTTATAATGACCTTAGGTTGGTTAGTTGTGATGGAAACCTTTTAATGGTCCATTTTGTG CCTGGGAAAATGTTGAACATGTACAGGATAGACTTCTCAACTATGGAGTTTGTCAGAATGGACACATTGGGTGAGCTAGC ATTATTTTATTCACCCTATGCAAACTGTTATGCATTGAGCAACCCAAGAAGGTGGGGATATGACAGCAACACTTTGTATT CAATTACCTGCTCATTTCCAGAATATAAAGTGTATTCAGGGAATGGAAAACTGCAAAACCACATTAGGCCTGATCGTGGA CTTCAAGTTCCTAAGAGATCCATACTTTACTGGGTGGATTGGTATTTGCCACATCTGCGGGATGAGGTGGATTATTCTCT GGTCGAATAA
Protein sequence (LotjaGi5g1v0050000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKLAAYNLLPWDDLAIICKKLNFNDIFQLSAVCKDWRSFFKSYWKNSMEFQSPLIVQRASFSKKSLSFISLSDNMSYSA QMDNFWSLSYSCSSSGYLIFVGPNMFMLMNPLTRRGKKISTLALKDNDDYRGSRAHFAFVKGSKEYVLVFFSNGSCRLNV YQSQNSCWAIYSTKGDPLQVVDLVVFQNSIYVLTNKAKIGVLNLNSTSLKFVELKNTPSITYNDLRLVSCDGNLLMVHFV PGKMLNMYRIDFSTMEFVRMDTLGELALFYSPYANCYALSNPRRWGYDSNTLYSITCSFPEYKVYSGNGKLQNHIRPDRG LQVPKRSILYWVDWYLPHLRDEVDYSLVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 84 | 84 | - | – | |
| ProSiteProfiles | 4 | 48 | 45 | 8.835 | ||
| Gene3D | 7 | 45 | 39 | 5.7E-5 | – | |
| SUPERFAMILY | 8 | 56 | 49 | 1.16E-5 | ||
| Pfam | 10 | 43 | 34 | 1.4E-4 | ||
| SMART | 10 | 48 | 39 | 5.2E-4 | ||
| PANTHER | 14 | 348 | 335 | 7.2E-90 | – | |
| PANTHER | 14 | 348 | 335 | 7.2E-90 | – | |
| Phobius | 85 | 108 | 24 | - | – | |
| Phobius | 109 | 349 | 241 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0050000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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