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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0052900 |
| Transcript ID | LotjaGi5g1v0052900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A151SA86|A0A151SA86_CAJCA B3 domain-containing transcription factor VRN1; Found in the gene: LotjaGi5g1v0052900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8812614..8817565) extracted from Lotus japonicus Gifu genome v1.2.
AGATAAACTGGAGTAAACAAGATTCAGATATTTGGTTACAAAATGTTTGGGAGGAATTTGTGAAACTTTACTACCTTGAT CAAGGGCACATGGTTTGGCACTTGGTTTTATTTGAATTCAAGGGTCCTTCTAAGTTTGAGGTGTGTATATTTGACAAGAA CGCCCTTGAAATAAAATATCTTCCTCTCAGTAACAAGCAAATTCCGAACTCAGCAACCCGTTTCTTTAGGATCATCACAC CACCATGTCTTGAAGCTGCAGAGCTTGTAAGCATTCTTTTCTTCATCTCCTCTTTCTTTTTGTGCATTTTCTTTCTTCTT TGAAATTTTTATTGTGAGATAGATACTAATGTCACAGACACTGCACATGATAAGTAGTTGAGGAGTATACACATCCCAAA TTAGTTTTCTCTTCTTGATTAGATGTGTCTTTTTGCAACATAATTGCTCTTCCCGATGATTCTATCTATCTCAGTGATCA CTATATAAGAAGTGACCCTAATTTTATATAAATTTCCTTCCTTTATTTATTTGCAGTGATTAGGAAATAGCAGGAAATCC TTAGTATCATTATTTAAAAAAAGATAATGCAACAGGGATTTGCATATCTGCCAGCAGGAATATGTGTATCCAGTATGAAT CGACCTGTGTCGTATGAGCAGGCCATAGTATGGAAAGTTCTGGATGACCATGATTCCAACCACTGCCTTGCCTTCATGTT CATGAACTGCTCTTTTGTTTCATAGGGACACCATCATTAAGATACTTATATCTAGTATTTTATTTTGAGTACTTTCTGTC ACAGACAAATGTAGCATGGTTGTGTGTGCCATTAGCTCTACCAAGTTTGTTCCTTCCTAAACTTACAACTGTATAACTGT CTTGTTGTGGGCCATTTATAATTTGTTTGCAAAAAATAAAGAAATTTTAAGGTTTTTATTTTACTTTCTTTTTGAGTTTA TTCATGATGCAAGCTAACATACAGTTCTATGCAGATTCTTCCAAATGGTTTCATGAAGAAATACAGTGGTGGCATGTCAA ACCCAGTATTTCTCAAGGCTCCTGATAACACTAGTTGGGAGATACACTGGAGCAAACATGATTCATATTTTTGGTTCCAA AAGGGTTGGAAAGAGTTTGTGAAATACTACTCCCTTGATCATGGGCACTTGGTATTGTTTGAATTCAAGGATGCTTCTCA TTTTGGGGTACACATATTTGATAACAGTACCCTTGAAATAGAATATCCTTCAAATGAGAATCAAGGTGAAGAGCACAACC CTGATCAGATTGGTGATGAGATACTGCTGCCCAAGAAGACTAAACCAAAATCACCAATGTCACTTTCTCGACCATGCAAG AAATTGAGAACTGGTAAAAGCAAAGATGTTGGAAAAAGCCCTGAATTGAGAAAGCGTAAGAAAGTCCAAGTTGAAGGTAA TATCAAGCTTAGATTTTTAGGCCATGTTTTCATAACATAACCTTTTTTTTCAATGTTTTCATAACATATCAACCTTTTTT TCAATGTTTTCATAACATAACCTTTCTTATTACTCCTCCCTTTGAAATGGTAAAGTTTATTCAAGTAATAATGCAAATAT GGATTTTTCAAAATTGTGCATCCCTGAGCTGAGTGGTTCTGTTACCATATATACCACAGGTGGGGAGCCAAGTAGCCTGG GCCCACACTTCACTGCACAGGGGGAAGCTCGGAAATACACCCCAAAGAATCCCTCTTTCACTGTCAGTTTAAAGCCGGTC ATTAAACTTGCGTACAGACCGGTAAGGATTATTAAGCTGCAAAACTCTTTTTCCCCCATCACATTATTTCTCATATCTCT CATTATTTGGTGCAGCCTGTACCCATTTCCTTCATCAGAGAGTACTTGAATGAGAAGAAGCAAACCATAAAGTTAAAGAT TGAAGAAAATTTGTGGCCTGTGGAGTTTATATATTATCCGGAACATGGTTCAGGCAAGTTGTCTAAAGGTTGGATACAAT TTGCAAAGGAAAGTAAACTTGTAGGTGGAGATGTTTGTGTGTTTGAGCTCATCAACAAGGACGAGGAAAATCCAGTGCTT GAAGTTCATATCTTCAAAGGTCACTGCGGATTGAGCGCCTGGCTACCTAGGGCAAATGCCCAAGCTCTGACCAAAAAAAA AAATTTTTTCTTTGGACCACATCATCTTTTGGGCCTCAAAAAAAAATAAAAAAGGGCAAAATTTAAAGGTTGGGGTAAAA TTGAGGACTATTTTATAAAGGGGAAAAGAAAGGGGAAAAGAAAGGGGAAAATAATAAAATAGAAACCCTATTCTCAATTT CCTACTCACTTTCTCCCTTCAGGCTTCAAATCACGCTTCAATTTCCTTCTCAGACTTCAATTGACTTCAATCTTCAGCCT TCAATCTTCAGGCTTCCCTTCAATCTTCAGCAATCTTCATTTCTCTCTGAGTACTCTTACTCTTCAAGCTTCAATCTAGA GGAATCAGGTCTCTTTCTCTCTGATTTCTCCATCCTAGCTTCAAACTTATTTGCTCTGTAAATCTCAATATCCTATTGTG ACTCTGTGAGGGGGTGTGCCGTGAGTGAGACCTGTGGGCTGTGGTGTGAGGGCGTGGGTGAGGGCCGCCTGAGGCGGTGG GTGGTGAGGGCGTGGGCGTGGCTGCGGCCTGCGTGTGCCGGTGTGGGTGAGGGCGCGGTTGCGGCCTGCGTGTCGTGTGG GTGAGGCGTGGCGTGGGCGTTGTCGAGAGGAACAGAGGAGAGGAGGTGAGCGGTGAGAGAGACTGAGTGAGAGACTGAGA GAAAGGTTAAGGCAGAAAAGGTAAAAAAAAAAGGGAAAAGTGAGACAGAGAGTGAGAGATGCGTGAGTGAGTTGGGTTTG GTATTCTTGAATCAAATATTAATTGTATGTGTCATGTGTGACTATGTGAGTGTGTGAAGGATAAGTTAGAAAAGTGTGAG AGACAGATTACATGAGTCATGAGATGCGGTTTGCCACTTGCCAACAATTGCCATTTGCCATGTATATTGTATAATGTGTA ATGTATTCAATTCAATTTAGTAATTGCTTGTGGTCCAAAATTTGGTAATTGCTTGTGGTCCATGATCTCTTCTCTTCCAT TTTTTGTACATCCAATATACTAATCATGTGAATATAGATTGTCTCCTTTTCATTTTTATTTATTAGTGTTGTTTTTAGTG CTTTTTTAATTTGATCATAATTTCTAATTGTGCTTTTCTGTGTTGTTTCTTTAGATCATTAAATTTTAGAGATGAGGAAA TTATTTGCCTCATGGTTTTACTAACTAAGACACTATTAGTATGTTCCATTTTTCTTATCTTATATTGTTTTCTTAGACTT GTCATGTGTAAATGATATGAAACCCGAGTTAGCTATACTTTTGTTATTAAAATGACGAGTCTTTTTTATTTTATTTATAA CTATTTATATATTGTGGCATGTGTGGATTTGCGGTCTAAAATTTTGCCCAGGTGTCACAAAATTTCTGGGTCCGCCTCAC TGATATTTGGAGCTCTTGGTCACTGATGTTTGCGTGTCCCAAATACTAAGTTAGTCCTGTATGAAAGTGCATCCTGCTTC GTAGAATGAAACTTTCCATTCTACCTCTTGTTTATTTTCTAATCTGAATTCTGAAGTGTTTAAATCCCTCTTCCCTGACT CTAAGATGCAATTCCAAAATATCATCTCAGTAGTACAATAAAATTACCTGGCCATGCCAGTTTTTATTTATAAAATCTCT AATGCCTAGTTGTTATGGTAAAATAATAACCTCACATTGAATTGCATCCCATAAGCTATTTGGTTCTGTTCTTCTAAATC TAATTGTGTTATCCTATTCTTGTAATCATCCAACCTTGTTCTCTAACTGAGATGGAAAATGTCCGGAATCAAATTCGGGT ACAAGTTATGTTATGTACTGCTATCTTAATGGCTGATGGATTTATAGAGGAGACGTGAGAGACTCCGATTCTTCCTTTCT TATCCATTGTTCAGAAGATTAATCTTTCTATCTAGTGTGAGGATATTCTAGAAAAAGAAAAATGTTGAGTAATTAAATAT AATCTTTACAGTAGTTTATCAGAAAATTAACTTCTCTAACACATGTGTAATGGTTAACAAGAGGAGTTACTTCCAGTTCA TCAACCAGGGCAGCATTTACCTCTTCTTCATGCATTGCTGGTTTGATTGCACCCCTGGTGGCATCTTCTTAATACATTGC TAGTTGATGATATTAGCTTTCTCATTCGATCAGCTCTGAATGTGGCATTCGCTGAACTTAGAATGCTTATCATAGGTTGG ATTATGCTTCGTGTTGGCATTCGATTTGGAAATCATGTAGTAGAATTTTTCTACAAACTTTGATAAATTCTTAGCAAATA CAAGCTTCTTTAGTGTAAATTGTAAACATTTGGTTCCTATATAAAAAGGAGCTACCTACTGTGTTTCCTGTTTAAATTAA ACCAAGAGTATCAAAGTGACTTTGAAAGTGAGTGCCAACACTTTGTGAGTGTTAACCTGAGTCAATAAAACTTTATAGGG AAAAAAGTAGATGTGATGGTAACGGTGAATGGTCCAATAGAGTATGTTTGAGTATGAGTTAGAAGTTAATACAGTTATAC CTTAAGGTTGAGAGATTACTACCTATTCCTAGTGATTTTTTTGAAGGCTGTGATTTTTTTGAAGGCTGTTTCTGAACATG ATAATGTTTCAAGCAGCAAACATCATCAAATTTGGGATTTTCACAGAAACCATGATCAATTATGGAACATAGAAGATTAA ATCAAGGAGGTGGAGGCTATCTCTTGGCTCTTTTGATTATTGTTGTAGGCATATTTCTTCCTGAGATTCCAAATTGCTTA TTATGATTGTACTGAAGTTACTAGTAAATGAATGTTAGACTTTTCAGCCTAGAAACATTGTATTAATAACCA
CDS sequence (LotjaGi5g1v0052900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATTCTTCCAAATGGTTTCATGAAGAAATACAGTGGTGGCATGTCAAACCCAGTATTTCTCAAGGCTCCTGATAA CACTAGTTGGGAGATACACTGGAGCAAACATGATTCATATTTTTGGTTCCAAAAGGGTTGGAAAGAGTTTGTGAAATACT ACTCCCTTGATCATGGGCACTTGGTATTGTTTGAATTCAAGGATGCTTCTCATTTTGGGGTACACATATTTGATAACAGT ACCCTTGAAATAGAATATCCTTCAAATGAGAATCAAGGTGAAGAGCACAACCCTGATCAGATTGGTGATGAGATACTGCT GCCCAAGAAGACTAAACCAAAATCACCAATGTCACTTTCTCGACCATGCAAGAAATTGAGAACTGGTAAAAGCAAAGATG TTGGAAAAAGCCCTGAATTGAGAAAGCGTAAGAAAGTCCAAGTTGAAGGTAATATCAAGCTTAGATTTTTAGGCCATGTT TTCATAACATAA
Protein sequence (LotjaGi5g1v0052900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQILPNGFMKKYSGGMSNPVFLKAPDNTSWEIHWSKHDSYFWFQKGWKEFVKYYSLDHGHLVLFEFKDASHFGVHIFDNS TLEIEYPSNENQGEEHNPDQIGDEILLPKKTKPKSPMSLSRPCKKLRTGKSKDVGKSPELRKRKKVQVEGNIKLRFLGHV FIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 81 | 81 | 2.3E-19 | ||
| SMART | 1 | 80 | 80 | 0.0012 | ||
| ProSiteProfiles | 1 | 80 | 80 | 13.281 | ||
| PANTHER | 3 | 146 | 144 | 9.7E-45 | ||
| SUPERFAMILY | 3 | 80 | 78 | 8.24E-18 | ||
| CDD | 3 | 78 | 76 | 1.78296E-13 | ||
| Pfam | 3 | 79 | 77 | 6.9E-12 | ||
| PANTHER | 3 | 146 | 144 | 9.7E-45 | – | |
| MobiDBLite | 88 | 141 | 54 | - | – | |
| MobiDBLite | 89 | 110 | 22 | - | – | |
| MobiDBLite | 126 | 141 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0052900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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