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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0053400 |
| Transcript ID | LotjaGi5g1v0053400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Major facilitator superfamily protein; TAIR: AT5G10820.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9LEV7|FBT6_ARATH Probable folate-biopterin transporter 6; TrEMBL-Plants: tr|K7MND7|K7MND7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0053400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9122838..9124446) extracted from Lotus japonicus Gifu genome v1.2.
ATCTGTATATTTAGAATGGATGTAACTATACACAAGATCTTGCAGGTGGCGGTTGAGAGTGTAGGAATGACAATTAGAAG CATGCACAAAAGAATGAAGTGTCCTCAAGTGTGGAGGCCCTCTCTTTACATGTTCCTTGCCTTGTCTCTTAATTTAAGCA TTCACGAAGGCCATTTTTACTGGTACACAGATCCAAAAGCTGGTCCTGCATTCTCTCAGGTATCTTTCATTTTGTTTGCT GGTGATTAATTGCATGTTTTGCAATCCTTCTACCATTGATTTTAAAGTCAAAATTAATTGTGGGGAGAAACTTTTATGAG TGCAGGTTTAGAAATCCTTCTACAATTGGTTTTAAAGTCAAAACCAATCGTGGGGAGAAGCTCATGTGTGCCAGAATTGA TTTTGAGGAGAAATAAGTTGATCTAGTACCTTCTGAGCTTTGGAGTTGATTATCAAGATAGAGAAGTTGTGTACCAGTAA AAATGATCTTCTTGAGTGCATAGCTCTAATATCATGAGAGAATGCACTCACTTATAGCGTGTTTTGATAAATTTCTCTTT CATTATAATTAATTCTAAAATCTAATTAAAAGCTACTCACAAAAGATTCTTCCCAAAATTGATTCTGGTTTTAAAATCAA TTACTGAAAGATTCCAAAACATGCACTTAGTCATGTTTAAATTCAAACATGCCATTTTAGCAATGCACTTCTTACAGAGC TTTCTCCCTCTGAATGCAGGAGTTTGTTGGGTTGATCTATGCATTTGGTTCAGTGGCCTCACTACTAGGGGTGCTAATCT ACCAGAAGACTCTAAAAGACTTTGCATTTAGAAACCTTTTATTCTATGCACAGCTCTTCTATGCCATATCTGGTGTGCTC GACCTGATCTTCATCCTACGCTGGAATCTGATCATAGGAATCCCGGACTACTTCTTCGTTTTCATGGAAGAAACCGCCAC AAGAATCACAAGCAAAATCAGATGGATGCCCATGATGGTGCTGAGCACCCAGCTCTGCCCGATCGGCATTGAGGGCACCT TTTTCGCGCTGTTGATGAGCATCGACAGCAGTGGTGCCCTCATATCCAAATGGGGAGGCGGGTTGCTTCTTCGGCTCCTC CATGTCACTAGGACCAACTTTACAAATCTGTGGCTCGCTGCTCTCATAAGAGACTTATTGAGATTTGCTACACTTGCTTT GGTTTTTCTTGTTCCTAAGGCAGGTCAGTATGAGGGACTGCATCTTTCTGAGGTTTATGAAAAACACACCAATGATCATG ATCATGCAAGCGAAGAGACCTTGGAGCTTGTCCCCATTATTAGCAGAACTGAAGTTTAGATAAATTTTGTTGCAATTCAT ATACACATGCCGGACTTTCAGATATACACAATTTTTTATATAGATAATGCTGATTAACTCGAATGATGTGCACAGGAATG GCTTTTTTTTAAGAAACAATTCTAAGGATATACAAGCACTTCTAGAACCATCACATTGGTAAATCAGAAAACCTGGGTAG CTGGTTAGAATGACAGCATGGTTTGATTCATGCATAAATCTTCCAAAGTTACTTTTTAAGTTTATGCTTGTAAAACTTTT TTTTTTAAG
CDS sequence (LotjaGi5g1v0053400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTAACTATACACAAGATCTTGCAGGTGGCGGTTGAGAGTGTAGGAATGACAATTAGAAGCATGCACAAAAGAAT GAAGTGTCCTCAAGAGTTTGTTGGGTTGATCTATGCATTTGGTTCAGTGGCCTCACTACTAGGGGTGCTAATCTACCAGA AGACTCTAAAAGACTTTGCATTTAGAAACCTTTTATTCTATGCACAGCTCTTCTATGCCATATCTGGTGTGCTCGACCTG ATCTTCATCCTACGCTGGAATCTGATCATAGGAATCCCGGACTACTTCTTCGTTTTCATGGAAGAAACCGCCACAAGAAT CACAAGCAAAATCAGATGGATGCCCATGATGGTGCTGAGCACCCAGCTCTGCCCGATCGGCATTGAGGGCACCTTTTTCG CGCTGTTGATGAGCATCGACAGCAGTGGTGCCCTCATATCCAAATGGGGAGGCGGGTTGCTTCTTCGGCTCCTCCATGTC ACTAGGACCAACTTTACAAATCTGTGGCTCGCTGCTCTCATAAGAGACTTATTGAGATTTGCTACACTTGCTTTGGTTTT TCTTGTTCCTAAGGCAGGTCAGTATGAGGGACTGCATCTTTCTGAGGTTTATGAAAAACACACCAATGATCATGATCATG CAAGCGAAGAGACCTTGGAGCTTGTCCCCATTATTAGCAGAACTGAAGTTTAG
Protein sequence (LotjaGi5g1v0053400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVTIHKILQVAVESVGMTIRSMHKRMKCPQEFVGLIYAFGSVASLLGVLIYQKTLKDFAFRNLLFYAQLFYAISGVLDL IFILRWNLIIGIPDYFFVFMEETATRITSKIRWMPMMVLSTQLCPIGIEGTFFALLMSIDSSGALISKWGGGLLLRLLHV TRTNFTNLWLAALIRDLLRFATLALVFLVPKAGQYEGLHLSEVYEKHTNDHDHASEETLELVPIISRTEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| SUPERFAMILY | 27 | 181 | 155 | 1.83E-5 | ||
| Pfam | 31 | 195 | 165 | 1.4E-44 | ||
| PANTHER | 31 | 227 | 197 | 2.8E-94 | ||
| PANTHER | 31 | 227 | 197 | 2.8E-94 | – | |
| CDD | 31 | 187 | 157 | 3.40987E-52 | – | |
| TMHMM | 33 | 52 | 20 | - | – | |
| Phobius | 33 | 52 | 20 | - | – | |
| Phobius | 53 | 63 | 11 | - | – | |
| Phobius | 64 | 84 | 21 | - | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 85 | 115 | 31 | - | – | |
| Phobius | 116 | 139 | 24 | - | – | |
| Phobius | 140 | 167 | 28 | - | – | |
| Phobius | 168 | 189 | 22 | - | – | |
| Phobius | 190 | 230 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0053400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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