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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0060200 |
| Transcript ID | LotjaGi5g1v0060200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT2G25490.1 EIN3-binding F box protein 1; Swiss-Prot: sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1; TrEMBL-Plants: tr|A0A151SCH7|A0A151SCH7_CAJCA EIN3-binding F-box protein 1; Found in the gene: LotjaGi5g1v0060200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10118475..10122865) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAGAAAGGAAAAGAAACCCCACTGTCTGTCTAGTTTCAATGCAAGATACATTGCATGTGAAATGGGAAACAATTCAT TGTACTGGAATCAATTAATATTTCCCCACTTGCTGCAACTTTCAATAAAATGCCTTCCCTTTTCACAATAACCATTCCTT AACTTCTCTCCTTCTTCATCCACCTTCCACTTCTCTCTCTTCTCTCTCTCTTCTTTTTGCCCTTACCTTAGGGTTTCTGC AATTTCATAGCTTCCACTAGCTCTCTCATGCATAATTGCCCTCAAAACTCACTCATCGCCATCGCAGTCACCACCGTCGT TCTTTTTGCTCTCGTTCGAGGGTTCTTTCGTCGAGAACACTGCAGATTTTGCCTCTCGAGGTTTTTTCAGCTGTGCCCAT GTCTAAAGTCCTCGGCTTTTCTGGTTAGTTCATCGAATTGTTGTGTGTTTGATTCGATTCATAGCTTTATTGGTTGTGGG TGTGGTATTTTTTTTTTTCCAAGTTTTATGGTAGATGATGATTTTGTGTTGCATGGAAAGGTTATTCTTTGGTAATGATT CTGCTCTGTTAGTTTTTTTTGGAAAAATTTTCTGGGTTGCGGTTAACTTTCTTATTTTGTTCTGTGTCATGGATCATCAT GTGGTTGAAATAAGATTTGAAATTTCTAACTGGATTGTTGAAGTTTTGTTTTTCCTTTGCTGGTGATCTGATGTTTTATA TATTTGGTTTTGTTTGAGGTGTATTTGGGTTTCAGGCACAAGTGGTTTTGATTGTTTTGATATGATAAAAGATATGTAAA TTGTAGAGATTCATAGTCTAAGTTTATTGAAGGGATGGTGAGATAGTTCATTATGAAATGATGTTGAGATTTTTGGATCT TGTTGGAAATTGGATCTTGTTAAGTTGATCTGAATCTCATGTTTGTTTCAGAGGATTTTATCGAGTTCTTAGGCATATCT TGATTTCTGTTATTTGTTCAAATATTACATACATAGGATAGATATGCCTGTTCCGATTAGTGGTTAAATATACCTATCTA TGCTCACTTTGTTCCTTACTGACTTTGGTAATCTGTTTGGGTTCTCAGGAACTGATGATTTTTGCCCTGGGGGGACAATA TACACAAACCCCAAGGAAGCAAGTTTCTTCCTGTCTCATGGCCTTCCAGTTGATGTATACTTTCCTGCTCGGAAAAGGTC ACGAATCAGTGCTCCATTTGTTTTCAGCAGAGAATGGTTGGAGCAGAAGCAGGAGACATCTATTGAAACTTTGCCAGATG AATGCCTGTTTGAAATCTTCAGGAAGTTGCCAGGTGAAGATAGGAGTGCATGTGCTTGCGTTTCCAAGCACTGGCTTATG CTTCTAAGCAATATTTGCAAGACTGAAATCTGTAGCAACAAAAATGCAAGCTTAGAGAATGAGAGTAAACAGGAAAAAGA TGATGAAGAGTTTGGAGGTGAGGGATACCTCTCTCGAAGCTTGGAAGGAAAGAAGGCAACTGATATTAGACTTGCTGCCA TTGCAGTTGGAACTGCATCCCGAGGAGGATTGGGGAAGCTTTCAATCCGTGGAAGCAACTCAGGTCGTGGGGTGACTACT CTAGGTCTCAAAGCAGTTGCTCGTGGATGCCCTTCTTTAAAGTCTCTTTCTTTATGGAATGTTTCTACTGTTAGTGATGA AGGCCTAATTGAGATTGCTAATAGTTGTCAACAGCTAGAGAAGCTTGACCTTTGCAAATGCCCTACAATTTCTGATAAGT CTTTAATTGCAGTTGCAAAGAACTGCCCGAATCTCACTGAGTTATCAATAGAACTGTGTCCAAAAATTGGCAATGAAGGT CTACAAGCCATTGGGAAGTGCTGCTCCAATCTAAGGTCTATATCTATCAAGGACTGCACTGGTGTTGGTGATCAGGGAAT TGCTGGCCTGTTTTCTTCAACTTCTTTGGTTCTGTCAAAGGTGAAGCTTCAGGCACTGACTGTTTCTGATCTCTCCATAG CTGTTATTGGGCATTATGGTAAAGCAGTTACAGATCTTGTCCTTAATTGCCTCCCAAATGTCAGTGAGAGGGGGTTTTGG GTTATGGGTAATGGTAATGGATTGCACAAACTCAAGTCACTTACAATTGCATCCTGCAGAGGTGTAACAGATGTTGGGAT TGAAGCTGTAGGAAAAGGTTGTCCAAATCTGAAAAGTGTACACCTTCACAAGTGTGCCTTTCTGTCAGACAATGGGTTGA TTTCATTCACCAAGGCTGCTTCATCACTTGAAAACCTACAGTTAGAAGAGTGCCACAGAATTACCCAATTTGGGTTTTTT GGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTATTTCTATGGTAAGCTGCTATGGGATCAAAGATCAAAACTTGGT GTTGTCACCCATATCTCCTTGTGAATCACTTCGGTCACTGTCAATCCGTCACTGCCCCGAATTTGGCAATGCTACCCTGT CTGTACTGGGAAAGCTATGCCCTCAGCTTCAACAAATTGAATTGAGTGGACTCAAGGAAGTGACAGATGCTGGGTTACTT CCACTGGTTGAGAGTTGTGAGGCTGGTCTGATCAAAGTTAATCTTCATGGTTGCATAAACCTTACAGACAAAATTGTTTC ATACTTGGCTAATCTTCATGGTTGGACTCTTGAGGTTTTGAACGTCGACGGTTGTAAAAATGTCAGTGATGCTAGCTTGA TGGCAATTGCAGAACATTGCCAATTACTTTGTGATCTTGATGTTTCCAACTGTGCAATCACTGATGCTGGGATAGCAGCC TTAGCACATGCAGAACAGTTGAATTTGCAGATTCTTTCTCTGTCAGGTTGCACTTTGGTTTCGGACAGGAGCTTGCCGTC TTTGAGAAAATTGGGCCACACCCTTTTGGGACTTAATATCCAGCATTGCAATGCAATCAGCAGCAGCACGGTTGACATGC TTGTGGAATTTCTCTGGAGGTGTGACATTCTCTCATGAGCGGGAAATATCCTCTTTCTGCTGCAATTTAGGCCAGCATCA GAACCTGCAGGAGGTTTATAACACAAACGTCGATTACGATTAGCGGTACACAGTAGTTTTTGGCTCCATTTACTGGTCTT GATCATTCAGCGATTCGGCTCCCTTTTTCCAGAGTATGCAGTCATTTAACCTTTTATTTTTGCAGTTTCCTGTATTGGGA ATCTGTTCAAAGTTTTTTTGGCATCTTGGTTTGAGTTGCCACCTACTAAATGGCTGTATATCTTGGAGAACATAGCTGCC GGGTTCTGGAGTAGGGAATCTTTCTTACTAGTGTTGGCATCTGATGTTTTTTATGTTCGCTTTGTATCGGTTTTGCCACC ATGTGTCCTAGTTTCTGTGTATGTTTTTACAGTTATCTGTACCAGGTCTGTCTATAGTTTACCAAATATGTCACGTCACG TCTTTGAACTCAGTTCTTGTCGTGATGTTTGGGTCTCAGTTTTACTCTTAGGGCAGTGCCAGTTATGTGCTGGTTTTATA GGCTGGTTGCAGTTGGAAGTTCAGAGTTATGATGCCTTGTTTTCAGGGGCTTTGGTCCTGGCAGCAAGTTACACAGTTCT GCCATGACAATCTTCTCCCTCTTGGGAAGGATTGTTTTTATACCAAGCCCTAGTTTTTTCAGGCCTCAATTTTTCAGAAC TTGTCCCTGCAACTTGTATCTTATGTATTGTTGTTGATATCTGCCCTTTGTACTGAATGTTATGTTATGAGAAGTAATGA AATAAAATTTGCAGTCTTATTCCCAATCTTTTGATATCTATACTTAGATTGTACTGTACCATTTTGCCAATAAATGTTGA CAATTATCCCATTCTCATTTAGTGATCTTTATCCCTGTGAAGGAAGCTTGCAGTACTTTTCTCATGGGGTGAAGCTATAG AACAAACTATAACAAATGAGGAACAATAGGAATGAAAATTAAAACAAGTATGCAGTAGAGCCCTAGAGTAATTGTAACAA ATGAACAAACCACAACATGCTAATGGTGACATGCATGAGGTGGGTTGTGGAGGTTCTGCATGAGTTGATGTTTTTTTTTG GTCAAAACATGAGTTGATGTTTGAACAGAAGAAAAATGTTTTTGGCCAAGATCAAATGAGTAACTTGATAATTGTATAAA TAGTTAAAAATTCCATCTTACTTCTGCTAAACTGGGGGAACAAGAAAAATTTAAAATGATGAAATGGGTTTCATTGGATT TTATGTCATTCCATTCTCTTTTTGTGCAATCCAAACAATAGAGCATGTAATTCATTTCATTCTTCTTCATTCCAGTGTAC CTGTTGCTTTCCTAATAGCGTTTTTGAATCTGAGTTATTTCTCTCAGAATCAATTTTAGCACTTTGGATTG
CDS sequence (LotjaGi5g1v0060200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAAAGTCCTCGGCTTTTCTGGAACTGATGATTTTTGCCCTGGGGGGACAATATACACAAACCCCAAGGAAGCAAG TTTCTTCCTGTCTCATGGCCTTCCAGTTGATGTATACTTTCCTGCTCGGAAAAGGTCACGAATCAGTGCTCCATTTGTTT TCAGCAGAGAATGGTTGGAGCAGAAGCAGGAGACATCTATTGAAACTTTGCCAGATGAATGCCTGTTTGAAATCTTCAGG AAGTTGCCAGGTGAAGATAGGAGTGCATGTGCTTGCGTTTCCAAGCACTGGCTTATGCTTCTAAGCAATATTTGCAAGAC TGAAATCTGTAGCAACAAAAATGCAAGCTTAGAGAATGAGAGTAAACAGGAAAAAGATGATGAAGAGTTTGGAGGTGAGG GATACCTCTCTCGAAGCTTGGAAGGAAAGAAGGCAACTGATATTAGACTTGCTGCCATTGCAGTTGGAACTGCATCCCGA GGAGGATTGGGGAAGCTTTCAATCCGTGGAAGCAACTCAGGTCGTGGGGTGACTACTCTAGGTCTCAAAGCAGTTGCTCG TGGATGCCCTTCTTTAAAGTCTCTTTCTTTATGGAATGTTTCTACTGTTAGTGATGAAGGCCTAATTGAGATTGCTAATA GTTGTCAACAGCTAGAGAAGCTTGACCTTTGCAAATGCCCTACAATTTCTGATAAGTCTTTAATTGCAGTTGCAAAGAAC TGCCCGAATCTCACTGAGTTATCAATAGAACTGTGTCCAAAAATTGGCAATGAAGGTCTACAAGCCATTGGGAAGTGCTG CTCCAATCTAAGGTCTATATCTATCAAGGACTGCACTGGTGTTGGTGATCAGGGAATTGCTGGCCTGTTTTCTTCAACTT CTTTGGTTCTGTCAAAGGTGAAGCTTCAGGCACTGACTGTTTCTGATCTCTCCATAGCTGTTATTGGGCATTATGGTAAA GCAGTTACAGATCTTGTCCTTAATTGCCTCCCAAATGTCAGTGAGAGGGGGTTTTGGGTTATGGGTAATGGTAATGGATT GCACAAACTCAAGTCACTTACAATTGCATCCTGCAGAGGTGTAACAGATGTTGGGATTGAAGCTGTAGGAAAAGGTTGTC CAAATCTGAAAAGTGTACACCTTCACAAGTGTGCCTTTCTGTCAGACAATGGGTTGATTTCATTCACCAAGGCTGCTTCA TCACTTGAAAACCTACAGTTAGAAGAGTGCCACAGAATTACCCAATTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGTGC AAAATTGAAGGCTATTTCTATGGTAAGCTGCTATGGGATCAAAGATCAAAACTTGGTGTTGTCACCCATATCTCCTTGTG AATCACTTCGGTCACTGTCAATCCGTCACTGCCCCGAATTTGGCAATGCTACCCTGTCTGTACTGGGAAAGCTATGCCCT CAGCTTCAACAAATTGAATTGAGTGGACTCAAGGAAGTGACAGATGCTGGGTTACTTCCACTGGTTGAGAGTTGTGAGGC TGGTCTGATCAAAGTTAATCTTCATGGTTGCATAAACCTTACAGACAAAATTGTTTCATACTTGGCTAATCTTCATGGTT GGACTCTTGAGGTTTTGAACGTCGACGGTTGTAAAAATGTCAGTGATGCTAGCTTGATGGCAATTGCAGAACATTGCCAA TTACTTTGTGATCTTGATGTTTCCAACTGTGCAATCACTGATGCTGGGATAGCAGCCTTAGCACATGCAGAACAGTTGAA TTTGCAGATTCTTTCTCTGTCAGGTTGCACTTTGGTTTCGGACAGGAGCTTGCCGTCTTTGAGAAAATTGGGCCACACCC TTTTGGGACTTAATATCCAGCATTGCAATGCAATCAGCAGCAGCACGGTTGACATGCTTGTGGAATTTCTCTGGAGGTGT GACATTCTCTCATGA
Protein sequence (LotjaGi5g1v0060200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKVLGFSGTDDFCPGGTIYTNPKEASFFLSHGLPVDVYFPARKRSRISAPFVFSREWLEQKQETSIETLPDECLFEIFR KLPGEDRSACACVSKHWLMLLSNICKTEICSNKNASLENESKQEKDDEEFGGEGYLSRSLEGKKATDIRLAAIAVGTASR GGLGKLSIRGSNSGRGVTTLGLKAVARGCPSLKSLSLWNVSTVSDEGLIEIANSCQQLEKLDLCKCPTISDKSLIAVAKN CPNLTELSIELCPKIGNEGLQAIGKCCSNLRSISIKDCTGVGDQGIAGLFSSTSLVLSKVKLQALTVSDLSIAVIGHYGK AVTDLVLNCLPNVSERGFWVMGNGNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAAS SLENLQLEECHRITQFGFFGVLFNCGAKLKAISMVSCYGIKDQNLVLSPISPCESLRSLSIRHCPEFGNATLSVLGKLCP QLQQIELSGLKEVTDAGLLPLVESCEAGLIKVNLHGCINLTDKIVSYLANLHGWTLEVLNVDGCKNVSDASLMAIAEHCQ LLCDLDVSNCAITDAGIAALAHAEQLNLQILSLSGCTLVSDRSLPSLRKLGHTLLGLNIQHCNAISSSTVDMLVEFLWRC DILS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 47 | 630 | 584 | 3.2E-293 | – | |
| PANTHER | 47 | 630 | 584 | 3.2E-293 | – | |
| SUPERFAMILY | 60 | 103 | 44 | 8.9E-10 | ||
| Pfam | 66 | 105 | 40 | 3.2E-8 | ||
| Gene3D | 68 | 104 | 37 | 4.1E-7 | – | |
| SMART | 70 | 110 | 41 | 1.0E-5 | ||
| Gene3D | 139 | 251 | 113 | 1.1E-22 | ||
| SUPERFAMILY | 174 | 416 | 243 | 2.35E-36 | – | |
| SMART | 189 | 214 | 26 | 0.0012 | ||
| SMART | 215 | 240 | 26 | 1.1E-5 | ||
| Pfam | 240 | 263 | 24 | 0.0094 | ||
| SMART | 241 | 266 | 26 | 1.6E-5 | ||
| Gene3D | 252 | 446 | 195 | 6.0E-32 | ||
| SMART | 267 | 292 | 26 | 0.0042 | ||
| SUPERFAMILY | 310 | 640 | 331 | 1.07E-31 | – | |
| SMART | 347 | 372 | 26 | 0.0018 | ||
| Pfam | 348 | 369 | 22 | 1.2 | ||
| SMART | 373 | 398 | 26 | 0.02 | ||
| SMART | 399 | 424 | 26 | 90.0 | ||
| Gene3D | 447 | 503 | 57 | 1.4E-8 | ||
| SMART | 453 | 478 | 26 | 0.58 | ||
| SMART | 479 | 504 | 26 | 2.2 | ||
| Gene3D | 504 | 566 | 63 | 5.8E-11 | ||
| SMART | 506 | 531 | 26 | 130.0 | ||
| SMART | 533 | 558 | 26 | 33.0 | ||
| SMART | 559 | 583 | 25 | 7.9 | ||
| Pfam | 562 | 581 | 20 | 0.077 | ||
| Gene3D | 567 | 639 | 73 | 4.2E-8 | ||
| SMART | 585 | 610 | 26 | 3.1 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0060200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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