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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0063100 |
| Transcript ID | LotjaGi5g1v0063100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CTC-interacting domain protein, putative; TAIR: AT5G11440.1 CTC-interacting domain 5; Swiss-Prot: sp|Q9LYE5|CID5_ARATH Polyadenylate-binding protein-interacting protein 5; TrEMBL-Plants: tr|I3SNT6|I3SNT6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0063100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10580671..10583504) extracted from Lotus japonicus Gifu genome v1.2.
TGCGCCTACTCTCTTGACAATCAATGAGTCACTCGCCAGCAAGTACTGCTTCACTTTATTTTTTCCTATAAATTAAATTA ATTTATTTTCTAATTTCATTTCAGTTTTCTTTCTCTCCCTTCCAATCAGAGCGATCGATCTCAAGAACTAGGGTTTCATC ATTTGCGTCTAACTGGTTAGTTTTCTCAATCTCCCTTCGAATATCAACTCTTGCTCATGTTACGATCCAATTATCATTGA ATTTCGATCTTCTTCTTGTCATCGATTCAATAGTTTTCTGCGAATTCCTTTCTATTTTTTGTGTTGATCGGAAAATTGTT CAAAAAGTCAAATTTCAAGGTTTATGTTTGTTCATCTTGTTTCTTGATCTCATATAATGCACTTGTTATTATCTTTGTCA AATGGGTTGCAATCAAATGTAATGATTGAATTGAATCACCATTAGTCACTTGTGTTCTGATCATGATGTAGCTATTCATG ATTCAATTTCAAAGCCTGTTCATTCATACCTTTAATTTCTGCATCTGCAAATTCTTTTTGTTTTAAATCTTGAGATTCTT TTTTTTTTTCATGTTGAATGATTCTTTTCTCTTTTGCTTGTGGGGGTTTTTTCAGCAAAGGAAAGGGAGAAGAATTGTTT ATCTATCTGATTCAACACCATGAAGCCGAGAAGATCGTCGTTGAACCCATATGCAGCCCCGTATGTTCCGTTCACCCAAA GGGAAACAAATGCTGGAACTTCTGCTGATGGGACTGTTTGGTTTCAGAGTCCTAAGCAGGCCACACAGGATCAGCAACTG GGCACGAAAAGCCTCTTGGGGGCCGAAGCTTTACCGGTGAAAATCCAGCCTGCGTCTAGCTCGTACACTTCATCTCAGAA TGAGAGAGACTTCACAGATAACCAGATTACAGATATAGAACTTGATATGAATATGGAATTTCTGAGGATGACATTCCCCG GTATATCTGATCAGTCCCTTGAAGATGTCTACAATGTTAACAATGGTGATGTGGATGCTACCATTGACATGCTCAGCCAA CTTGAGGTATAGCTTTAAAATTACTAGCTTCTGGGTTTTATATTTTTGTTCATCCAATGTCACAATTGTATTCTTCCAGT CCAGTAAGTGACCAAACTGATTGTCTTTGCATAAATGAGAGTATAGTTAAAATTTGAGCATGTATTCAAGCTAGGTTAAT GTTGAATCACATGATATATGATAACATTGACTGAAAATTTTGGGTTAGAATTGTGTACTAATGTAGATGAATTTAACTAG TTTATAATCCACCCTTCTGTTCCCTTTTCATTTCCATTATTTTCCTGCCTGAAGATTTTGTCTCCAGCTGACATCAGGGA AAAGTTTTCATCTTGTGGTTGTCGAACCTCACAAAGTGATCCGCGATTGTCCTGCCATGTTGGAATTTTTCTTAAATTCC ATTTTTCCTTTGTTTTATATTTTCCCCATACATATTTTGTGTATTCCCAGTTTGTTTGTTTAAAATTTGGTTTCCCCTTC GTACCATTGTTTTTCTGTTTTGTTCCCAATGTCTGACTGTTGTCGTTTCATACTTTGCTCTTTCATTTGATTTGTTTCCC TCTGGTTCAGTCTTTGTTTTACGGGGTAGAAATGTTGAAATGTTGCATATAACTTATGGAAGCTTGAACAGAGTAAGATT TTGTTATGAAAAAATATACTGTTTTCTGTTTTGCACTTTGTAAATAGAGATGAAATGTTATGAAATTGTTTAAAAGCTCC TTTCCATCAATGTTAGCCCATCAGTTTCTGGATTAATTAACTGCTAGAATTATCATAATTGAATCATGTCAAACATTTAA CTAGGAGCTGATATTTTTGGTGGTCATCTCCACATAATGGATCCTTCCTGAAACAAATTTAGTTGTGATTTCCGATTTTC TGAGAGCTTATTGTTTTCATGTTACAGTTCGATAATGTTGATTCCTCTGGAATTCTGCCGGAGACGCTGGATATTGGTGA TGTATCAGATTCTGTATTCCCAGCTGATTCTGCTTCATTAAAACCGGAGGGCCTAGCAGCCAAAGGCAGCACCTCATCTA GTCACCTGGGATCAGCTAACATCTTGTGAATTGGTTTCCTACTCACAATTGGTTTGATTGGATATATTTAGTGTAAAAAT AGGAAAAATACTTTAGGTGGAGACGCCTAACATGTTTCCATTTTTATGGTTTGTATAGTTCTCAGATGCGTCTTTGATTT GCTCTTCCTTGCTTGTGCTTCATATGGTCTGCAATTTTTTTTTGTTCTGATGGGTTATTTGTGCCTCGTGCAACTGTTCA GCTTTCAATTGTATGAATTGGAAGGCCCACAAAAGAAAAAAAAGGAATGGCAAAAGTGGTAAAAGAAAAACAATTCTGAA TGAAGGTGATTTTTGCTTGGATGGATAAATGGCTTGTGCCTGAAAAATCGTACTTTGGTGGTGCTTTTGCTATAGATATA ATAAATGCATTTTTATTTCCTTTCTTGTTTCCTAAAGTTCATTGAGTGCTAATGATAGCGGTAATGGGGAATTTATATGT TGATTTTTAAAGCTTGATTAATTAAAGTTTGGGCGAAGTTAATACTAATGAGAATAGTAAACTCTTAATTTATCTCTTTT TTTTTCAGTTATAAGATTTTAATACGAGAGTGGTACCATTTAGCGACTCTACCACCTCTCTGTTTTGATCGAAGAGCGAT CCCACCATTAGTTGTTCTCTACGGTTTGGTTTCTTCATGTTTTGTGTCAGGTTGGATGCTACACCACTTCTTTGCGATGC GTGATAGCAAGTCGTTTGCTTGGATTCCAAATGC
CDS sequence (LotjaGi5g1v0063100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCCGAGAAGATCGTCGTTGAACCCATATGCAGCCCCGTATGTTCCGTTCACCCAAAGGGAAACAAATGCTGGAAC TTCTGCTGATGGGACTGTTTGGTTTCAGAGTCCTAAGCAGGCCACACAGGATCAGCAACTGGGCACGAAAAGCCTCTTGG GGGCCGAAGCTTTACCGGTGAAAATCCAGCCTGCGTCTAGCTCGTACACTTCATCTCAGAATGAGAGAGACTTCACAGAT AACCAGATTACAGATATAGAACTTGATATGAATATGGAATTTCTGAGGATGACATTCCCCGGTATATCTGATCAGTCCCT TGAAGATGTCTACAATGTTAACAATGGTGATGTGGATGCTACCATTGACATGCTCAGCCAACTTGAGTTCGATAATGTTG ATTCCTCTGGAATTCTGCCGGAGACGCTGGATATTGGTGATGTATCAGATTCTGTATTCCCAGCTGATTCTGCTTCATTA AAACCGGAGGGCCTAGCAGCCAAAGGCAGCACCTCATCTAGTCACCTGGGATCAGCTAACATCTTGTGA
Protein sequence (LotjaGi5g1v0063100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPRRSSLNPYAAPYVPFTQRETNAGTSADGTVWFQSPKQATQDQQLGTKSLLGAEALPVKIQPASSSYTSSQNERDFTD NQITDIELDMNMEFLRMTFPGISDQSLEDVYNVNNGDVDATIDMLSQLEFDNVDSSGILPETLDIGDVSDSVFPADSASL KPEGLAAKGSTSSSHLGSANIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 176 | 176 | 7.1E-57 | – | |
| PANTHER | 1 | 176 | 176 | 7.1E-57 | ||
| Gene3D | 70 | 137 | 68 | 9.4E-9 | – | |
| ProSiteProfiles | 87 | 130 | 44 | 11.092 | ||
| SUPERFAMILY | 87 | 133 | 47 | 1.63E-5 | ||
| CDD | 89 | 131 | 43 | 3.93613E-13 | ||
| MobiDBLite | 163 | 182 | 20 | - | – | |
| MobiDBLite | 166 | 182 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0063100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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