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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0063700 |
| Transcript ID | LotjaGi5g1v0063700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endonuclease V-like protein; TAIR: AT4G31150.1 endonuclease V family protein; Swiss-Prot: sp|Q8C9A2|ENDOV_MOUSE Endonuclease V; TrEMBL-Plants: tr|A0A151RDK1|A0A151RDK1_CAJCA Putative endonuclease FLJ39025 family; Found in the gene: LotjaGi5g1v0063700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10706933..10714713) extracted from Lotus japonicus Gifu genome v1.2.
GTCATGTCCTTTGGAAATACCTGTATATTAACATAAATGAATAATTGATATTGATAACACATGTGTGAAAAGATTCAAAT GCTTTATTGTAGATGTGGAAAGATCCAGGACTATAACGTTCGGATCTCTCCAGGACTATAAGGTTCGGACTGGTTGATAA TTAAATTTGTCGCCCCCCTTTTTAAGACGTCCAAGAGTTGTTGAACTTGATTAATATGAAATTTCAAGATTCGGACCTCT CAAACCAGATACTGTCACAAAGACAGAAACACGAAAATGCAGAGACAAAATATATGGGACAAACAGACATGGTTACAATA CTGGAGCATTGTTTTAATACATGTAGGAAAATATTCAAATGTCAAATCTAATACAACATTACAAACATGAATCATATTAT CAATCTTTTGTTATGTCTATGTAATCATTCTTGCTAGGAACATGAGGACCAATCCAAACAGTGTGTTCAGCCATAAATCT TTCCAAACGCTCTTCATACGGTCTACACCATTCGGACTCGGGTTCTACAACGTTGTATTCCCATTGGAGAGCAATTGGTG GCATAGGATGTCCAGACACCAACTTTTGGTCGCGATTTATTGTGGCTTTTGGCATTTGTCGCTTCTGGGTCGCACGTCTT GAGAGCTCCGTGTGTTGATATTTTGTTCTGTTCCAAAAGTGAATCTGAATTGATTGTTCTGTTCTAATATTAACAGAGTT CGAACGCTGAACATTCGGATGAGTCCGAATGTTCAACCTCTAGAGTAAAACACGGAGAGCCAATTTTGGTTTTTCCCCAC ATTTAAATGGGGTGGCAATTCTAAATGAAAATGAGGGGTGGGAAATCTAATTGCTAGAGGAAGAGGCATCCAAAATCACC TGTGTTCAGATTCAAGCAATGGAAAAACCATCACAGTCACCACAGGACTCATCTCAAGATCACCAGAACTGGATAACGTT ACGTGTATCAAAAATCTAAATTCCCACAATTCCAAGTTTTGATTCTTACAATCATTAACCAGTCTTCATCCCTTTTCAGA GCGCAAGATACTCTAAGGGAAAAGCTGATAACAGAGGATAGTTTCCCGTGGAAAGCACCCAGCACAGGATTGAGATACGT TGGTGGTGTTGATATAAGCTTCTCAAAGGATGATCCATCAAGAGCGTGTGGCACCCTTGTGGTGTTGGACTTTCACACCC TGCAAGTTGTTTATGAGGACTTCTCCTTGGTCACTCTTGAGGTCCCTTATGTGCCTGGTTTCCTTGCATTTAGAGAGGTT TTTTCCCTCTCTCTCTCTTTCTTATTCAGCCCTCCATTTAGGGTGTGTTTGTGTAAGAAGTTTAATTAAGGGTGCATTTG AGAAAACAACTTAATTAAGCGTTTATGGGGTGCTTATTGCCTAAGCACGTATTCATAAGCTAATTTGAGAAATTTATTGG AATAAGTTGAAAATAGGTTATAAATAAGTGTAAGCTCTTATTCGTAAGCTATTCTGAACAACTTATAAAAATAAGCACAA AACAGCTGATAAGTAGGCTATAAGCTATTTACATAAGCTCTCCCAAACACTTGCATAAGCGTTTATGCAATAAGATAAGC TCAAGTAAAATCTTCCAAACGGGCCAAAGTGTTTATGGTAATAGATGCTTATTCTTGTGTTAATTTGAGAAGTTTACTGA GATAAGTTTAAAATATGTTATAGGTAGGTGTATATAGTAAGTATAAGCGCTTATTCATAAACTAATCCGATAAGTTAAAG AAAATAAGCTCAAAATCAGTTATGGATAGGTCATAAGCTATTTACATAAGATCTCCAAAAGACTTGCGTAAGCACTCTAG TTATGTTATATGATAAGTTCAAATAAGGTCTCCCAAGCACGACCTTATTGTATAGAGAAGGTATTGCTTATATTAGTCCT GAAAAATAATTGAAACTGTCATCTGGTTGGTGAGTGTATTTTGTCAATCAAACTAGTCTTGGATCCTGCTAACTCAAGTA GTATAATTAACAATGTATGTTTTGAATATTGATATCCTAAATCTTATGTATTAATTACTAGTACGAGTCTACGACCAACA TTATATATTTCAGCTATTAATTTATTTATTTTTTCTTTCTGTAAGTGTCTGGAATAGTTTTTGAGCATATTGATTGTTCC TATAATTTTAGGCCCCAGTTCTTCTAGATATCCTGGAGAAAATGAAAAGGAGTGATAATCCTTTCTACCCTCAGGTAATT GATGCATGTCATATAAACATATTGATTTGAAGGCATTTGATGCCTTTGGAACTTGCTCGTCCTTTCATTATTCAGTATTT TACTTTGCTGGACTGCCTATTTTGTTAGCTGCTCTGAAAACTCAAATGTGTAGAATTCTAACGGATTATTAACTACTTTG GATTTTCTTGCGATATATGATGTTTTTGTACCTAATGTTTTCATCATCTGAATGGAAGGTTATTTTGATATTTGTTAACA GTTGATAATGGTCGATGGGAACGGAATACTTCATCCCAGAGGCAAGTGCTCATGCAATTACATGTTGCATAAAGACTTAT GTGCTATATTTTTTTAATAATTGATGAAGTTTTTCTTCTTAAAAGAATCATATGCTTGAACTTAGCTTAGTTTTATGAAA AATGTTACTTACAAAGATACTCTTATTATTATTCAAATGTTATTGGTTAGAAAGTTCCGTAACTAACTGTTTGTGTAACT GTAACTAACTCTGACAGCTGTAACAGTTAGTGACTAACTGATTGTGGTTAGTTAGTGAGGTTAGTACTGAGGCTTAGGAA ATAAATAGCCAAATGTAGAGTAGAAGTACAGAATTGGGAAACAAGGGTTTATCAATAAAATTCTTTCTTGCTGTTTTCTG ATACTGGTTAGGAGGGTTTATGTGAGGAAAATGAATTAAGGAGCAAGGAACAAAGCCCCTGAATTGTGTAACTGTTTTAT TAGACTAAGGGGTATTGAGTTGCATAATTGTCTGTGTGACTAACTCTGATGGCTCTAACAGTTAGCAACTAACTAGTGAT CTCGGTGCAGAGAATTAGGAAATAAATACCTGAATGTAGAGGTGAAGGATATCTCCTTTGTGAATCTGAGTGGTGGGATG GGAGAGGTCCTGGAACTCTTCTCCATGGGGTTTCATTGTATATTTCCGTTCTTTCCTTCACCTGGACCTGCTTCAACAAC AGAGTTGGAAAATTAGAATTTCATCAATAAAATTCATTCTTCTTGCTTTCTACTTCCAGTTTTATCAACTGGTATTAGAG CTCGTATCTGGAGCTGTGGGAGGTGTGGAACAATCGAAAGGGAGTGTAAATACAGTTCTCGCACAGGACAGATGTCGAAC GCGATGCTGGGACAACCGGTTCGACAACTGACTAACAGTAACAAAACCAGAAAAATAATAAAGTAGAACACAGAAGATTG GTAACCCAGTTCGGTGAAACTTCACCTACGTCTGGAGGGTTTGCACCCAAAGAAAGGAAATCCACTATCTCAAGATTCAG AAATTACAGACACTCATGAACACCACAGTTCATAGTTCACTTCCTAATCTACCCAAGTGTATTTCTACTTAGTATATCTC AACCTAAGTATGAGAGTCCCTCTCCCTTTCTCTCAATCACTGCCACAGTGATTGGTAACAAACAATCAACAATCAGAGTT TGAAGAATTAAAGAACACAGAACACAACTTTGCTTTATAGAATCATGGAGCAAAGTTTGTTCACAAGAAACAAGGATAAA GAACAATGAACAACCCTAAAACACTTGATCTCTCTCTATTAGCTTCAGTGGTCTTCAAGCTTTAGGTCTTCATCCTTTTT ATAGACTTCAGCAGCAGGTAGGCACTAGGGTTTGCTTGGGCTGAAGTAACAGATTGCAACAATAATCAAATCAAAACAGA ATCTCCAAAGATCTTGTTGCGTTTTTCCCAAGTAAAGATAGAAACAAATCTTTTATCAAAGATTGTTTCAACAAATAACA ACCCAACAATTAAAACCCTTCTGAAATAGCTACTTGCTCCTCAAGTAACTCAAAAACATATCTTCAGCAAATCTTCAGAG GGCCCACAAAATTAAACTTCAGCAAAGGACTGATGTCCTAGCTTCACGAAATCAGATGCCACGGCATCTGCTTCGACAAT CAGTTGTTTTTGACAAAATGCATGACAAAATGTTCCAACAGGGAGACTGCTTTAGATGTGATGAGAAGTTTTGGGCCAGG TCATGGCTGTACTGTGAGAAGTAAGAACAAGCAATTTCAAGTTATGATTTTGAAAGAAGCTGAAGAAGAATGAGGAGGAA GAGGCAAAAGGAAGTGAGTAGTTGGAAGAAGAGACAGATACTTTTCAGCTATCTTTGTACATAGTTATATGGTTCATATT AGAAGATCACTCGAGGTATGGGGTAGTATAGATGGGAGAAAAGTGGTAGTTCTAGTTCATTGTGGGGAGACACGCAACTT TATATAAACAAATCTAGTTGAGGAATTGGATCTTCCCAAAACACAAACTCTTTCCTATTTTGTTGAGGGTATAACATAAA ATAAGGTGCAAAGGGGTCTCCTATGGGGCAACTTTTGAATTGAAGGAACTAGAAATTCAGCAAGTTTTCTTCCTTTTTGG CTTTGGAGGGGCAGATGTTGTGTTGGGTTGGATTGACTGGCAGGATTGGAAGAGATAAGGCCTATTTTGAGGAATGAACT ATGAAGATTAAAGTTGGAGGTGGAAAATGTTGCTTAAGAGAGAACCTGAACTGATCAGCTGTGCAATTTCTTCGAAATTC ATGTTGCTGGCTGACTGGCTCTACATGACTAGCACATAATAAGAGAGACAAAACATGGGTCGTGTTAGGTTGAAATGTAC TTCAATAGATCAGTGCCATTTTCAGGCAATACTTTATGGTTGTTACATCTGAACCAAGTAGTTTTATCACTCATTTTCCA TTGTTAAAATAATTGTTTTATTTTCCTTATCTAGGATAACTATCCTGAGAAAGTTGAAATCATTTTAGATTCTTCTGAGT TATATGGACATTCCATAGTTAATTTAACAAAAAAAATTAGCTTGCTACCTTTAACTTTTTCAGGGTTTGGCCTAGCCTGT CATATTGGAGTTATGGCCAACCTACCAACAATTGGCATTGGAAAGAATGTTAGTATTTATATTATCACTAATTGGTTCTT TTTATGATTAATTCGTATTGATTATCTTCATCTAAATCATGTGTCACAATATGCTGATGTCCCTTTTGCAGATTTTCTCT TTCTTTTCTGTCATTTCACTGTTTCGATCCTACCTTGATACTTTTTCGGGTTAAGAACTAGGAAGTACTGAGTAGATACC TGACTTCCTTAGCTTTATATGTTCCAGTTGCATCATGTGGATGGTCTTGATCAATCTACAGTGAGAAAGCTTCTTGGAGC CAAAGAAAATTCATCTAAAGATTTTATTACTTTGGTGGGTTGTTCCGGGCATATATGGGGAGCGGTAAGAATTTGAATTA CTTGCACTCATCCTTATTTTCATGATAATGGTGTGCTGGGGAGCACTGTTATCAAATAGCGGATATTGCGGCGCCATAGC GTAGCGCCCTGAGGGCTCACCGCTATCCACTATTTTCCGCTCTGAGGGCTTGACTTAGCCGGTTTTTGGCTTTCTGCTAT TTTCCGCTATCCACGATTAACAACACCGCTGGTGAGAATCTGCTGTTTACAAAAGGCTGTGCATGTGTGCCATAATCATG AAAAGCAAGTTGTGAAGCTTAAACTTACATAAGCTGCTAAAATCCAACTCCATGTGTTTGTGCACTTCTTATTGATATAT TGACAACGTTTTTTTTTCCTTCCTTTCTTGCCATACCTATTCCAGGCCATGAGAGCTACACAGGGATCCATAAAGCCAAT ATTTATATCAATCGGTCACAGGATATCACTTCAAACTGCCATTACGATTGTTCAGATGACTTGCAAGTATCGTGTGCCTG AGCTGATTCGGCAGGTAAAACTATTTTGCATTTGGAAGAATATGATATCTACCTTATACATACGCTTACTATCACCACTT GCCAATTGAAGTTAAAGAAAAAAAACACATGAACCATAAGAATATATTGAACATTTTTATGCCTTGTATATTTTTTTTAC TTTATCTCTTATTAAGCTAGTAATATTAACTCTTCTCTTGTGCAGAAGTTACCAGTTTATTGTATTAGGCCACTTTTGTA TTTTAGGAATCACTAGAAAATTTCCATGCAGCCTGGTATGAAGATACAGTTATCTTCGGCTGTATTTGTTCTCCTTTACT TGGTAGTTGAACTCAATTTATCTTGCAAAGTATTGTGTTGATGATCCATTAAATGTAGCTGCACTTCATTTATTAATATC CATATTACAAGTGTTCAGTGTAGCAAGTATTGATAGCTAGATTGATTTACTGTTTTCCCCAAGTGCTGGATGCTGATTAA TAAATATTTAGATTAGACTAGTTGTCTAGGTTTTCTGTCATATAACTTCTCCTAGAAACAATTTTTTTCTTCAAAAAAAA AAAACTATGAATAACTGTCTCTATTCCAATTCTTGTTTACTTATGCAAAATCAAAGTATCCAGTCCTTACTTACACCTCT ATTGGAACTGCAGGCTGATATAAGATCTAGAGATTACATTCGGAAGTTTGAAATGAATGCGAAAGTGAAGTAATTTAACT GATATGGTACATTACTATCGACTTTTAACTTTAATTTTCTCATTGGCTCTCGTACACATTGTTTATGTCTGCACTTGCTA GATACTCCCATGAATTATATGCTTGTATGGCGTTTAAGTTGTCACAACAACTTAAATTTTCATATCCAGAGATGTTGGTG AATAAACTTATTGGAATTTGGATTAGGCTTAACTCTACCTTGAAAGCTATTTAAGGGTGATGATTGCTCTACCCTTAATA AGGACTATTTTGGCATATCTCTAGTCAATGTGAGATCTTAACACCTCCTCTCGCTCAGTGCTGAACATTTGAAGCATGAA GTTTGCATGACTGGACATCTGTAGACCGCAGGTGGGCCCAATAAACGGGTCTATAGCTTTTGGGGCAGAGTTAGGCCTAA TCCAAATTCTAAGAAAACTCATGGTTATGAATATACTTTTATATCATATATTAGGTAGTGACTAAATGTATATCTTCTGA TACAATCTTAAGCTCTAAGATTGATTGATGCAAGCCTTTTTTCTGATACCTCTCCCTCTCATAATTCTCAGTATGAATTT TTCCTTCTTGATGTACTTTAGTACTTCTAACCCTAATCCTGTTGTAGAATTTATATACATTATTTTCTCTAAATTAACGA GATCTCTTTCAAGCTTAAGATTTTGGCAAGTTAAATAAACATAGAACTAACTATGAGAAATGAAGGTAATCAGTGGGCCT TATTGGCCTCAAGGGACATACATGAATGAACTTGATTGAACCATCACAATTTATCAGTTGGTCAGAAACAAGGAAGTGCA ATTGGATTTTGCTTATAATGATCCGTTTTGCCACGCAGGGCTTCCATGGACTCAGAATCTCCCATCCCTTGTTGTAATTA TATTTAAACTATTCATGTAAAAGAGTGATGACATTATATGCAACCAGGTAACAATCTGTGTAGTGTACTAGCAGAGTTGT CATGTAAAAGAGTGACATAAAGATATTTACTTGTATGCTCGAAGCGTAATTTATTTGGCATAAAGATATTTAATATTAAT TTCAAATTTGTTAGTACTATC
CDS sequence (LotjaGi5g1v0063700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAACCATCACAGTCACCACAGGACTCATCTCAAGATCACCAGAACTGGATAACAGCGCAAGATACTCTAAGGGA AAAGCTGATAACAGAGGATAGTTTCCCGTGGAAAGCACCCAGCACAGGATTGAGATACGTTGGTGGTGTTGATATAAGCT TCTCAAAGGATGATCCATCAAGAGCGTGTGGCACCCTTGTGGTGTTGGACTTTCACACCCTGCAAGTTGTTTATGAGGAC TTCTCCTTGGTCACTCTTGAGGTCCCTTATGTGCCTGGTTTCCTTGCATTTAGAGAGGCCCCAGTTCTTCTAGATATCCT GGAGAAAATGAAAAGGAGTGATAATCCTTTCTACCCTCAGTTGATAATGGTCGATGGGAACGGAATACTTCATCCCAGAG GGTTTGGCCTAGCCTGTCATATTGGAGTTATGGCCAACCTACCAACAATTGGCATTGGAAAGAATTTGCATCATGTGGAT GGTCTTGATCAATCTACAGTGAGAAAGCTTCTTGGAGCCAAAGAAAATTCATCTAAAGATTTTATTACTTTGGTGGGTTG TTCCGGGCATATATGGGGAGCGGCCATGAGAGCTACACAGGGATCCATAAAGCCAATATTTATATCAATCGGTCACAGGA TATCACTTCAAACTGCCATTACGATTGTTCAGATGACTTGCAAGTATCGTGTGCCTGAGCTGATTCGGCAGGCTGATATA AGATCTAGAGATTACATTCGGAAGTTTGAAATGAATGCGAAAGTGAAGTAA
Protein sequence (LotjaGi5g1v0063700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKPSQSPQDSSQDHQNWITAQDTLREKLITEDSFPWKAPSTGLRYVGGVDISFSKDDPSRACGTLVVLDFHTLQVVYED FSLVTLEVPYVPGFLAFREAPVLLDILEKMKRSDNPFYPQLIMVDGNGILHPRGFGLACHIGVMANLPTIGIGKNLHHVD GLDQSTVRKLLGAKENSSKDFITLVGCSGHIWGAAMRATQGSIKPIFISIGHRISLQTAITIVQMTCKYRVPELIRQADI RSRDYIRKFEMNAKVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 253 | 249 | 1.5E-114 | – | |
| PANTHER | 5 | 253 | 249 | 1.5E-114 | ||
| Gene3D | 14 | 256 | 243 | 5.7E-101 | – | |
| Hamap | 14 | 249 | 236 | 27.758 | ||
| CDD | 18 | 244 | 227 | 1.82976E-94 | ||
| Pfam | 25 | 239 | 215 | 2.4E-68 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
Expression pattern of LotjaGi5g1v0063700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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