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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0066300 |
| Transcript ID | LotjaGi5g1v0066300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcriptional adapter 1; TAIR: AT2G24530.1 transcriptional regulator of RNA polII, SAGA, subunit; Swiss-Prot: sp|Q12060|HFI1_YEAST Transcriptional coactivator HFI1/ADA1; TrEMBL-Plants: tr|I1M9S8|I1M9S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0066300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11016937..11020097) extracted from Lotus japonicus Gifu genome v1.2.
ACTTTAACCAAAAAAGAAACACCAATAACAATTTTAACTGAAGTGACTACCTAATACAGAAACAAAAACAAAAGAAAAAA GTGTTGTAAACCAACCGAGGATGTCTTGGAAGATTACTTTATAAAATCACCAAATCCTAATTAATCAGCCAAAAATCACA AAGATTTTAGGTTAAAAAAAAAGAAAACTGAATTTTATTTTATACATCGGAAAACTATACAACAAAGTGAAACTACACAA ACCTCCCGAGAATCGGAAAACTATACAACAAAGTGAAACTACACAAACCTCTAGAAAATCACGCAGAAGCGATCTGCAAG TCCGAGCAAGGATCTCCAACACCGTCAAGCCCGCCGATAGCGGCAAAAACTTAGTTAAGAAATCCGCTACACCATTGCAT TAGCGAGAGACTACCACCTTATAGAAACTACCCAATTTCTCCCAGGAAGTGAATTTTTTTAATAAGGAAAGAAGAAAAAA AAAGAAACAAAAGGAAAATAAGAAGAAGAAAAAGAGAAGAAGAAGAAGAACACAATTAGCAGCGAAAACACACAGAGAAA TCAAAGCTGAAATTAAAAAAAAATAAAAAAAAATTGACAGAGAGAGAGAAGCGTAGCCATAACCGAAGCTTCGAAGATTT GAAAGCAGCAAGTGAAGTTCTTCGTGTAAAAATTCGTGAACTGTGCTGAGGTAAGAACTCAATCAATGCTTAGTTTTTGC TCTTCATTGTGCTTCCTTGCATTCAAATTTCAATTGTTTTCGTTCTAATTTCAATTCTGTTGAACTCAGTGATCCAAGTT CGGGATTTCTCGGAAGCAATGAGGATTTTCAGAATTGTTGTTGTTCAAGTGATGTGAGGTGTTTCGGATTCAAACTTAGG GTTTTGATTTCCCATACAACAATTTTTGTTGATTTTGTTTTGGTTTGGTTTCATCTCTAGGGTTTTGTGGGTGGGAAGTG GGGATTTGCCTTTGCATTGTGTGGTCAGTTGGTGTGTGAATTTTGGGCATAAGGGTAACTGTTTTCACTTCAGAGTTGCT GATTTGGCTTCTGTTGCTGTTATTTTGATGGTTAATGCTTCTGCTTGTTCTGGTCTGCAGAGGTTGGTTTGTGTTCAGTG ATGTGGGAGAGGGGAAGTTTTGGGTTATTTGGAAGCAGAAGAAGTAACTGGAATTTGGCTCGAATTGAAGTTACAGGTGG GTGGGTTGTTTTCTGATTTGTCTGGTGGTGTGGTGTATGAATCTGTTTGTTGAGAAATGCTACCCGGGCGGCAGCAGAGC TCGAGAGTCGATTTGGGTGAATTAAAGGCCCAAATTGTGAACAAGGTTGGAGCGGATAAGTCGAAGCGGTACTTTTATTA CTTGAACAGGTTTCTGAGTCAGAAGTTGAGCAAGGCTGAGTTTGATAAGTTATGTTATCGGGTGCTTGGGAGGGAGAACC TTCCATTGCACAATCATTTTATAAGATCAATCTTGAAGAATGCCTGCCAAGCCAAGATACCGCCACCAACCCAGCCATCA GCTCCTCCAAAATTGGGAGCGCATGTTACTAATGTATCTCCCAGTAGAGAAGATGGACATGAGCAGAGTGTTGCTACCTT TCAAAATCAAAGTGCATCGATCTGGTCAAACGGGGTTTTGCCGGTGTCCCCGCGTAAGTTAAGGTCTGGAGTACGCGACC GGAAGCATAAAGATAGACCAAGCCCTCTTGGTCCAAATGGGAAAGTTGATTCTGTTGCTCCTCAATCCACTGCTACAGAG GACAGTGGCACTAGGGTTCACATAGAGAATGGAACTCTCACTCCATGTGATTATCAGAGACCAATACACCATCTGCAAGA AGTTTCTGAGCTACCTAAGAATGGTGAGGGGGGTGCTGTACAGAGACCAGCTAAAAAACCAAGAATATATGGCAAAGGGA TGAGCAAAACACCAATTGTTGAAGATGGGGAGGAGGTGGAGCAGTTGAACCGCCTCAGTTTTGCCAGAAGTCCCCTGATA GCACCACTTGGGATTCCTCACTGCTCTGCAAGTGTGGGTGGGGCCCGCAAATCATTGCCAGTGAATAGCGCTAGTGATTT TGTTAGTTTTTGTGACAGTGGTAGTTTACCTGATACAGATACACTGAGAAGGCGCATGGAGCAGATTGCTACTGTACAGG GTCTTGGAGGTGTTTCTATGGAATGTGCAAATATGTTGAATAATGTGTTGGATTCGTACCTGAAAAGGTTGATCAGGTCT TGTGTCGATTTAGTGAGCGCTAGGTCTGCGAATGAGAATGAGCCGACCAAGCTCCCTGTCTCAAAACCGCAGATTCAGGG GAAGATCATGAATGGCATGTGGCCAAACAATCAGTCACATGTGCAGCAGAGTCCTGGTGGGCCGGCAGAGCCTGAACTTG AACACAGACCCCAGATCTCCATATCTTTGCATGATTTTAAAGTTGCCATGGAACTAAATCCACAGCAACTCGGAGAAGAT TGGCCACTACAGTTGGAGAAACTTTCTATGCAATCCTTAGAGAAATAACACACCTTATCAAGTCTTTTTTTTCAAGGCTG GGTCTGTTTCATTTGAATCTGATGGTTCAGCTAGCAATGATTGGTGGTGATTATCGGCGCGCTTAGCTCTGACAGATTGG CAGGAAAACCCGATGATCAATCAATACTGGTTTAAAACTGCAACCAGTAGCCAGAGGATTGGTTGCACTGTTGTATGATT AGCATTTATGTTGGCTGTTTTTGCTTTACAGCCAATAAGACTTAGAAAGTTTTGCAGGGATAATACTATTGTGTAGCTCA GTAGCTGGGAATGGGACTAAGAGCTCAAGGGTTGCTCTGTATGTATTTTTAGCATATGAGGATTGATTAAAATTCAATAT TAATAACACGTCAACATCAATTGAAATTTCCTTGATTATTATTTCATTTCATGTTTTATTTCTTGTCTATTTACCAAGTG GGTATTTCAAAAAACAAAAACCAAGTGGGTTGAAACTTGCACGTTTCTTTCCGTTCTAATTAATTTTGGTAAACTATAAA GGAATTTTAGTAAAACCAATATTGACAATCCATGCATTGATAGCCGGTCCCAAGCCAGGGGAAGGAAGAGAGTTGTAGAG AGTTGTGTTAGGTCTTGGCGGCCAACATAAAATTCATCGAT
CDS sequence (LotjaGi5g1v0066300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTACCCGGGCGGCAGCAGAGCTCGAGAGTCGATTTGGGTGAATTAAAGGCCCAAATTGTGAACAAGGTTGGAGCGGA TAAGTCGAAGCGGTACTTTTATTACTTGAACAGGTTTCTGAGTCAGAAGTTGAGCAAGGCTGAGTTTGATAAGTTATGTT ATCGGGTGCTTGGGAGGGAGAACCTTCCATTGCACAATCATTTTATAAGATCAATCTTGAAGAATGCCTGCCAAGCCAAG ATACCGCCACCAACCCAGCCATCAGCTCCTCCAAAATTGGGAGCGCATGTTACTAATGTATCTCCCAGTAGAGAAGATGG ACATGAGCAGAGTGTTGCTACCTTTCAAAATCAAAGTGCATCGATCTGGTCAAACGGGGTTTTGCCGGTGTCCCCGCGTA AGTTAAGGTCTGGAGTACGCGACCGGAAGCATAAAGATAGACCAAGCCCTCTTGGTCCAAATGGGAAAGTTGATTCTGTT GCTCCTCAATCCACTGCTACAGAGGACAGTGGCACTAGGGTTCACATAGAGAATGGAACTCTCACTCCATGTGATTATCA GAGACCAATACACCATCTGCAAGAAGTTTCTGAGCTACCTAAGAATGGTGAGGGGGGTGCTGTACAGAGACCAGCTAAAA AACCAAGAATATATGGCAAAGGGATGAGCAAAACACCAATTGTTGAAGATGGGGAGGAGGTGGAGCAGTTGAACCGCCTC AGTTTTGCCAGAAGTCCCCTGATAGCACCACTTGGGATTCCTCACTGCTCTGCAAGTGTGGGTGGGGCCCGCAAATCATT GCCAGTGAATAGCGCTAGTGATTTTGTTAGTTTTTGTGACAGTGGTAGTTTACCTGATACAGATACACTGAGAAGGCGCA TGGAGCAGATTGCTACTGTACAGGGTCTTGGAGGTGTTTCTATGGAATGTGCAAATATGTTGAATAATGTGTTGGATTCG TACCTGAAAAGGTTGATCAGGTCTTGTGTCGATTTAGTGAGCGCTAGGTCTGCGAATGAGAATGAGCCGACCAAGCTCCC TGTCTCAAAACCGCAGATTCAGGGGAAGATCATGAATGGCATGTGGCCAAACAATCAGTCACATGTGCAGCAGAGTCCTG GTGGGCCGGCAGAGCCTGAACTTGAACACAGACCCCAGATCTCCATATCTTTGCATGATTTTAAAGTTGCCATGGAACTA AATCCACAGCAACTCGGAGAAGATTGGCCACTACAGTTGGAGAAACTTTCTATGCAATCCTTAGAGAAATAA
Protein sequence (LotjaGi5g1v0066300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPGRQQSSRVDLGELKAQIVNKVGADKSKRYFYYLNRFLSQKLSKAEFDKLCYRVLGRENLPLHNHFIRSILKNACQAK IPPPTQPSAPPKLGAHVTNVSPSREDGHEQSVATFQNQSASIWSNGVLPVSPRKLRSGVRDRKHKDRPSPLGPNGKVDSV APQSTATEDSGTRVHIENGTLTPCDYQRPIHHLQEVSELPKNGEGGAVQRPAKKPRIYGKGMSKTPIVEDGEEVEQLNRL SFARSPLIAPLGIPHCSASVGGARKSLPVNSASDFVSFCDSGSLPDTDTLRRRMEQIATVQGLGGVSMECANMLNNVLDS YLKRLIRSCVDLVSARSANENEPTKLPVSKPQIQGKIMNGMWPNNQSHVQQSPGGPAEPELEHRPQISISLHDFKVAMEL NPQQLGEDWPLQLEKLSMQSLEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 422 | 417 | 1.0E-201 | – | |
| PANTHER | 6 | 422 | 417 | 1.0E-201 | ||
| Pfam | 6 | 333 | 328 | 1.1E-68 | ||
| MobiDBLite | 82 | 112 | 31 | - | – | |
| MobiDBLite | 133 | 170 | 38 | - | – | |
| MobiDBLite | 362 | 381 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | SAGA-type complex | A histone acetyltransferase complex that acetylates nucleosomal H3 and H2B and is required for the expression of a subset of Pol II-transcribed genes. The budding yeast complex includes the acetyltransferase Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins. |
Expression pattern of LotjaGi5g1v0066300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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