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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0070200 |
| Transcript ID | LotjaGi5g1v0070200.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mediator of RNA polymerase II transcription subunit 4; TAIR: AT5G02850.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9LZ00|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4; TrEMBL-Plants: tr|G7LC42|G7LC42_MEDTR Vitamin-D-receptor interacting mediator subunit 4; Found in the gene: LotjaGi5g1v0070200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11614435..11615963) extracted from Lotus japonicus Gifu genome v1.2.
GTGTCTCTGGCATTCACGTAGGACTAATATTTGCTTGAATCTATGTCTCCCCTGTTGATTTCTATGCCTGAATTCATGTA TTTGGTATTATTTATCAATTTATAAATTTATGTACTTACTTTTCACTTAGATTTATGTCTTTTGATTGTAGAATGTCATT TGTTACTTATGTGTACTGAATGATGGCTGGCTCTTTCACATTCTATTGCCCAGTTGATCTTATTAGTGGGTGGATCTAGT TCATCCATGCTTTCCGATCTTTACCTAATTTATTTTTTTGGAAATACAGGAGTACTGTAAAGGATTAGAGTCATTGGTAC AAAATGCTTCAACACCAAATTGTACAATCCCCTGCGAGGCTAGGCCTTACGAATCCTAACTCACCATCGATTCCAAACCC TACCCCTTCGAAGCCCCCTCCTACACAAACCCATAACAACCAAGACCGCCATTCGGCAACCCCTTCTGCTGCTCTACTCT CTCTTCTCCCACCCCTCCCCAGAGCACAAGCAATTCTTGTTCAAATGGCTTCCTTGACATCTAAGCTTTTTGAAGTATCA TCCAACAGATCTGTTTGGGTCACTGCATTCCGCGGATCAATCCCAACCTTCCTTTCTTCCCAGGCCCAAGCACATTCGTC TACCCCATTGGAGTCTTCTCCTTCCTCCACCAAAGAAATCATTTCACTTTTCTCTACCCTTCAAACCCAAATTGTTGAAG CTATAACTGAACTCCAAGAAATTCTTGATCTACAGGATGCTAAGCAGAAGATTGACCGGGAAATTCGCTCAAAGGATATG GCACTTCTTGGATTGGCTAACAAACTCAAAGATTCTGAGCGCGGACTTGACATTCTTGTTGATGATTACTCTGATTATCG TCGCAGCAAGAGAACGAAATTAGGAGATGGTAGTGAAGATGATTCTTTGACTTCCTCGACTGTATCATCCCAGCTGAAGC TATCAGATATATTGTCATATGCCCATCGTATAAGTTATACCACCTTTGCTCCACCAGAATTTGGAGCTGGGCAGGCTCCT CTCCGTGGTGCAATGCCACCCGCACCACAAGATGAACAAATGAGAGCTTCACAGTTATATAATTTTGCAGACCTTGATAT TGGATTGCCTAAAGCAGTTGAAACGAAGGAGAAAACAATTGAGGCTATTGTGGAACCTCCACCTCAACAATCTGTGGATA CAAATCCACTTGCAAATTTTTCTGCAATTCAAGGGTTGCTTCCTCCAAATTTTGCTGTGCCGCCTGGTTGGAAGCCCGGA ATGCCTGTACAATTGCCTATGGATATACCAATTAAGCCTCCACCTGGGTGGAAACCAGGGGATCCTGTGCCATTGCCTCC CATGGACTCACTTCCAGTACCGAGATTTGAGGAACAACAGTTACACCCCCACATTCCTCAGCCCAAGCAGCCAGAAGTTA TTCAAGTGCAGCATGTTAATCTGGATCTTGGAGGAAGTGACAGTAGTGATTATAGTAGTGATGAAGCCAGCTCTGATGAT GAAGATTGA
CDS sequence (LotjaGi5g1v0070200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCAACACCAAATTGTACAATCCCCTGCGAGGCTAGGCCTTACGAATCCTAACTCACCATCGATTCCAAACCCTAC CCCTTCGAAGCCCCCTCCTACACAAACCCATAACAACCAAGACCGCCATTCGGCAACCCCTTCTGCTGCTCTACTCTCTC TTCTCCCACCCCTCCCCAGAGCACAAGCAATTCTTGTTCAAATGGCTTCCTTGACATCTAAGCTTTTTGAAGTATCATCC AACAGATCTGTTTGGGTCACTGCATTCCGCGGATCAATCCCAACCTTCCTTTCTTCCCAGGCCCAAGCACATTCGTCTAC CCCATTGGAGTCTTCTCCTTCCTCCACCAAAGAAATCATTTCACTTTTCTCTACCCTTCAAACCCAAATTGTTGAAGCTA TAACTGAACTCCAAGAAATTCTTGATCTACAGGATGCTAAGCAGAAGATTGACCGGGAAATTCGCTCAAAGGATATGGCA CTTCTTGGATTGGCTAACAAACTCAAAGATTCTGAGCGCGGACTTGACATTCTTGTTGATGATTACTCTGATTATCGTCG CAGCAAGAGAACGAAATTAGGAGATGGTAGTGAAGATGATTCTTTGACTTCCTCGACTGTATCATCCCAGCTGAAGCTAT CAGATATATTGTCATATGCCCATCGTATAAGTTATACCACCTTTGCTCCACCAGAATTTGGAGCTGGGCAGGCTCCTCTC CGTGGTGCAATGCCACCCGCACCACAAGATGAACAAATGAGAGCTTCACAGTTATATAATTTTGCAGACCTTGATATTGG ATTGCCTAAAGCAGTTGAAACGAAGGAGAAAACAATTGAGGCTATTGTGGAACCTCCACCTCAACAATCTGTGGATACAA ATCCACTTGCAAATTTTTCTGCAATTCAAGGGTTGCTTCCTCCAAATTTTGCTGTGCCGCCTGGTTGGAAGCCCGGAATG CCTGTACAATTGCCTATGGATATACCAATTAAGCCTCCACCTGGGTGGAAACCAGGGGATCCTGTGCCATTGCCTCCCAT GGACTCACTTCCAGTACCGAGATTTGAGGAACAACAGTTACACCCCCACATTCCTCAGCCCAAGCAGCCAGAAGTTATTC AAGTGCAGCATGTTAATCTGGATCTTGGAGGAAGTGACAGTAGTGATTATAGTAGTGATGAAGCCAGCTCTGATGATGAA GATTGA
Protein sequence (LotjaGi5g1v0070200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQHQIVQSPARLGLTNPNSPSIPNPTPSKPPPTQTHNNQDRHSATPSAALLSLLPPLPRAQAILVQMASLTSKLFEVSS NRSVWVTAFRGSIPTFLSSQAQAHSSTPLESSPSSTKEIISLFSTLQTQIVEAITELQEILDLQDAKQKIDREIRSKDMA LLGLANKLKDSERGLDILVDDYSDYRRSKRTKLGDGSEDDSLTSSTVSSQLKLSDILSYAHRISYTTFAPPEFGAGQAPL RGAMPPAPQDEQMRASQLYNFADLDIGLPKAVETKEKTIEAIVEPPPQQSVDTNPLANFSAIQGLLPPNFAVPPGWKPGM PVQLPMDIPIKPPPGWKPGDPVPLPPMDSLPVPRFEEQQLHPHIPQPKQPEVIQVQHVNLDLGGSDSSDYSSDEASSDDE D
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 45 | 45 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 11 | 401 | 391 | 1.4E-83 | ||
| Pfam | 119 | 261 | 143 | 1.9E-8 | ||
| MobiDBLite | 332 | 401 | 70 | - | – | |
| MobiDBLite | 332 | 350 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Cellular component | Mediator complex | A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
Expression pattern of LotjaGi5g1v0070200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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