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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0070700 |
| Transcript ID | LotjaGi5g1v0070700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT2G37390.2 Chloroplast-targeted copper chaperone protein; Swiss-Prot: sp|Q58FZ0|NAKR2_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 2; TrEMBL-Plants: tr|C6TLC3|C6TLC3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0070700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11667498..11669626) extracted from Lotus japonicus Gifu genome v1.2.
CATAAATCCTACATAAGTTTTGAGAAACTGTAACTTAAAAGCAATCAGTGCAAAGCTTTTGTTTGTGTGTGTCTGTGCAC AAGTTCTCTCTTTTATCTCTCGCTCAGTGCTAGTTGCAGATTCTCTAAGAACCACTAGTTCTCTCTGTTATTGTCATCTA AAGGATGAAACGCATAGACATGTTCTGTGCTTCACAAGCCTCAACAGCCATATGTCTTAGCATGGACCAAGCCTCCTGCT CCTCTTCCAACACCATTCAACTCGGAGGCCGAGCAATCGACCGCCACAACCCCATTATCAACGATTCAAGAAGAAGCACC TCTAGAGCCCCATGTTCTTCATCTCAGCCACCCATCAACCCAAAATCTTACCAAAAATCCAAGATAAAAAACTCTTCTTC AAACCCAAATGGCCAGAACAAGAAAAATGCAGCTAAAGTTCATGATCAGAAGAAGAAAAGCACAGCAGAAAAGCTCACTG ACAATGTCACCAACAACACCAAAAGCCACTCTTCTAAGCCAATTGATAGTACCCTGAGAAGGACTTGGCTTAAGGCACCT AATGAGTCAGTCACTTCTCTTGGTTCAACTAGATCTTTGCTCAGTAACACTGCACTCTTAGATGGTTCTTCAGATTATGA GCCAGTTTTGGCATTAAACAAAGGTGATACTAAAAAGGCTCAAGTTGTTTGTGAAGATGAAATCCACCCTGCATCTAAAT CCTCTAGCCCTTCTCGTCCAAAATCTGGTTCCTCAGACCAGGTTAGTCTTGTTATCTTTCTATCTCTCTCAAGTCCCACA ACGAGCACATCAATGGCATTTATGTAGGATATTCCAATCTGAGCTTCTGCACTTGATTAAGTGAATAGTCAATTTGATTC AGAAAAGATTTTGCTGCTTTGCAAGTTAGTCACCGGAAGAAGGAAATATGTTAGAAAGTACCTGTATGTATAAGACGTAA GGACTAACTTGACCGATGTTTACTCATTCAGACTTTATTCAGTTCTTCTAACGATTAACTTGCCAGCGGTGAGATATCTT TCAGGGACCAAGTTGACCAATCACTCATTTTTCTTAAGGCCTCTCCACTTCTAGGATGTGTTTGTGTTTTAGATTGATTT GTGCCAGTGTTTTAATTCAAAAAACTAAGATTAGTATATGAAGTAACTTGAGTAGAACTATTGAAAGTGAAACTATGTAA AATTTTAATATTTCAATAACTGGTTTGAGTAAATTATTTAGCAGGTTGTAGTGCTGAGAGTTTCTTTGCATTGCAAAGGC TGTGTAGGGAAGGTGAGGAAACACCTCTCCAGAATGCAAGGTAACTCACATTGCCTTTCATATTTGAAACCCTTTTACAT AATAGATTTTATACATCTGCAGTTTTGATACTCAATTTTCTCTTACATCACACTTCCATTCATTTTCTGTTCTTATTTAT CTCTTCTTTTTTCAGTTACATTATTCGTCATATCTCTTACTTCTCTCTTGTATTCCTATCTCTCTCCGAATGTGGATGGA TTAGGGCGTGAACAAACTATCTTCCTTTATAATAAAATTCAAGTCATTTCCATTTTAAGGGGATCTTGACGTTGTTGATT GCATTTGCAGGAGTTAGTTCCTTCAACATAGATTTTGCAGCAAAGAAAGTGACAGTAATTGGGGATGTGACTCCATTAAG TGTCTTGGCAAGCATATCAAAGGTGAAGAGTGCACAATTTTGGCCAACATCAGCCTCAGCTCTTGGATCTGGTTGCGCAG AAACCAAGATACAAAGTTCATGTAGATGAGAGGAATGTAGAATACTAGAGTATATGTATTGACGTGTATTTTTCTTTACG AGATTAGGTATCCACGCTGGCCGCGGTAACTAATCCTCTGTCACGGGTGCTTGCACTAAGCTGTAAGCAGCTGATCACAA AATGTGCTCTATGTTTTAGGTGTGAATTAGACGGTAATTTAATTATTGTAAATGTATGTTAGGAAGGTAGCTGTGTCACT TGTAAGCAATAAATTGGAGGTAGAATTTTAATGAACAATGAAATTTGCATGATTTTTAATATAAGATTAGGGTTCATAGT GGGGAAAAGTTGGCTTTCTCTGACATGAGAAGTAGATTAAAAATGATAA
CDS sequence (LotjaGi5g1v0070700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACGCATAGACATGTTCTGTGCTTCACAAGCCTCAACAGCCATATGTCTTAGCATGGACCAAGCCTCCTGCTCCTC TTCCAACACCATTCAACTCGGAGGCCGAGCAATCGACCGCCACAACCCCATTATCAACGATTCAAGAAGAAGCACCTCTA GAGCCCCATGTTCTTCATCTCAGCCACCCATCAACCCAAAATCTTACCAAAAATCCAAGATAAAAAACTCTTCTTCAAAC CCAAATGGCCAGAACAAGAAAAATGCAGCTAAAGTTCATGATCAGAAGAAGAAAAGCACAGCAGAAAAGCTCACTGACAA TGTCACCAACAACACCAAAAGCCACTCTTCTAAGCCAATTGATAGTACCCTGAGAAGGACTTGGCTTAAGGCACCTAATG AGTCAGTCACTTCTCTTGGTTCAACTAGATCTTTGCTCAGTAACACTGCACTCTTAGATGGTTCTTCAGATTATGAGCCA GTTTTGGCATTAAACAAAGGTGATACTAAAAAGGCTCAAGTTGTTTGTGAAGATGAAATCCACCCTGCATCTAAATCCTC TAGCCCTTCTCGTCCAAAATCTGGTTCCTCAGACCAGGTTGTAGTGCTGAGAGTTTCTTTGCATTGCAAAGGCTGTGTAG GGAAGGTGAGGAAACACCTCTCCAGAATGCAAGGAGTTAGTTCCTTCAACATAGATTTTGCAGCAAAGAAAGTGACAGTA ATTGGGGATGTGACTCCATTAAGTGTCTTGGCAAGCATATCAAAGGTGAAGAGTGCACAATTTTGGCCAACATCAGCCTC AGCTCTTGGATCTGGTTGCGCAGAAACCAAGATACAAAGTTCATGTAGATGA
Protein sequence (LotjaGi5g1v0070700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRIDMFCASQASTAICLSMDQASCSSSNTIQLGGRAIDRHNPIINDSRRSTSRAPCSSSQPPINPKSYQKSKIKNSSSN PNGQNKKNAAKVHDQKKKSTAEKLTDNVTNNTKSHSSKPIDSTLRRTWLKAPNESVTSLGSTRSLLSNTALLDGSSDYEP VLALNKGDTKKAQVVCEDEIHPASKSSSPSRPKSGSSDQVVVLRVSLHCKGCVGKVRKHLSRMQGVSSFNIDFAAKKVTV IGDVTPLSVLASISKVKSAQFWPTSASALGSGCAETKIQSSCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 280 | 280 | 6.9E-116 | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 280 | 280 | 6.9E-116 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 27 | 9 | - | – | |
| Phobius | 28 | 283 | 256 | - | – | |
| MobiDBLite | 36 | 126 | 91 | - | – | |
| MobiDBLite | 48 | 88 | 41 | - | – | |
| MobiDBLite | 104 | 126 | 23 | - | – | |
| Gene3D | 196 | 260 | 65 | 1.9E-15 | – | |
| ProSiteProfiles | 199 | 256 | 58 | 11.448 | ||
| SUPERFAMILY | 199 | 256 | 58 | 1.7E-13 | ||
| CDD | 202 | 255 | 54 | 4.7299E-12 | ||
| Pfam | 203 | 254 | 52 | 2.1E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi5g1v0070700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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