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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0073000 |
| Transcript ID | LotjaGi5g1v0073000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Copper transport protein family; TAIR: AT1G66240.1 homolog of anti-oxidant 1; Swiss-Prot: sp|O82089|CCH_ARATH Copper transport protein CCH; TrEMBL-Plants: tr|I3SU18|I3SU18_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0073000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12082263..12084914) extracted from Lotus japonicus Gifu genome v1.2.
AGTAGTAATATAAATCTAGACAAAATCTGACTAAAATAATTCCCAATCTACAATGGCCCACAAGAATATAACTTGCGTTT GGAACCCGTGTATCTGAAAGTTGTACCACACACTCACTTTCATTGTTGGTTTGGTTATAAATTCACCACCCCATCACCAC AACTCTTCATTCCATCAACAATTCAATTTGAATACCATAAACATGTCTTCCCAGGTGCTAAACCCATCTTCTTATTCTCT TATGATTTTTAGTTTTCATGTGCTTGATCATTGTGATTGTGTGTCTTTTTTATTATGTGTTTTGATCCACGATTATTTTC CAATTTGTTTTGTCTTGATCTAGTTTTAATTTGATGAGTTTTTAACTTGAAATATCATAATTTCTTCATGGTGTTTTTTT TAAAGCTAGGATTTTGAATGGTTTCTTGTTGGAATCCTGAGAAGTTGAAATAGTAATTCTTGGGGTTTGAATTTGAAATA GCTTAGAGAAAGGTTCCAACATTTGCTAAGACTACACAATTGAAGTTGCAGATCATGACTTGTTAAGACTACACAATTGA AGTGCTCTGCTTTCAATATAATTGCTTGGTGTATATGCATTTAGTTTTCACCATCCATCTTTCACTCCATTGATTGTGTT CCAAAGCTTAGCCTGATATTAGAAATTGGTTGCATTGCTTGTATGAAAAGCTAGAGTTTAGATTTGTATTTAGTTTTGTA GGAAATTAATGTGTTCAATTGGATCTATGAATGGTGAAACAGATTATTCTTATCTTCAGTTTCTTTCCTTTTTTAAACTG ATTCAAAGAATGAATGTGTTTCTTTATGTTTCTATTTTGATCTGAATTCTCTGATTAATACAGACCGTTGTCCTCAAAGT TCGCATGTCATGTCAAGGCTGCGCCGGAGCAGTGAATAGGGTCTTGGAAAAAATGGAAGGTATTTTGAATTCAATATCAA CATAATTAGTTATTGTAACAATGAAATATCTTGAGCACTGATCTTTTTCATTAGTATTTCCTTTCTTTTTCTTTCTGTCT ATTTTATCAATATATCAATACATGCTATGCTGCCTGTGTGTTTCACTTTCTAATTCTAATTACCTTGAGTTTTTGGTTTT TTTTTTTCTTCTGTTGATTCTGAAAAGCTTTTGCCATGGATTTCCTTTGTAAAATTAATAATGTGTTCCTCTGTTGATTC ACAGGTGTAGAATCATTTAACATTGATTTAAAGGAACAGAAGGTGACTGTGAAAGGAAATGTAAAGCCAGAGGATGTTCT GGAAACTGTCTCCAAATCTGGAAAGAAGACTGCATTCTGGGAAGATGAAGCACCAGCAGCAACACAAGCAGCTGAGACTC AAAAGCAGCCTTCAGAAACCGCCACTCCTGACCTTGAAAACAAGCCTTCAGAAACTGCAGCTGTTGTCTCAGATGAGCCT GAAAACAAGCCTGCAGTTGAAACTGCAACTCTTGCCTCAGCTGAGCCTGAAATCAAGCCTTCAGAAACTGCAACTACTGT TGCTTAAAGCAAACATTTATGGTTTATTTCTATTGATATAAGTATATTTGATATATTTGGTGTGTTTTGCTACTGGTATC TAAGTTACAATTACTTGTGCCTTACACTGTTCCATCATCCATGTATGCTTTAATGTAGTATTCCACTAGTCACTCTTCCT ACTTCCTTTTGGATAATGTGTCTCAATATGAGCTTATGAACTGTTCAATGAAAATCATTGATGAACAATATGCAAATTAG TGAGCCTGAGCCATACAAGGGGGTTCTCAACAATGATGAGTTAATTCACTTAATTGTCTTGTATAAATTGAGTAGAAGTT CTATAAAAAATGAACATTGTGTTAAAAAGTGTGTATCCGGTGGGTTCTTCAACAATAAAGTTTTGTTTACACTTTCGCGA GTCACCATTGCAACCCTAGCTCAACTTCAAGCATTTTCTCCATGGAAGCTCAAGAACTCTCACAAATTCGCTCTCGTGAG ATCGTGACTTCATGGAAAACTGAACCCTAGCTCCATTTCAAGCATTTTCTTACTATCTTCTTTTGTTTTTTCTACTTATT TTGCTTGAGTCTAGAGGTCGATGAGTTCGACATTCCTCTGATTGATATGAATTAGCTGATAATTAACCGAATAAGTTGTG CCTTTGGTTTCAAAGAAATGTTTGATTAGCTTGTTAGCAATATTTTCAGCAAATTAGATTTCTCAGCAGCCAAACATAGT GCAAGCATTGTAGCTTTTATGACTGTTCAAATTGATTAGTCCACAATATTTGATCAGCGAAATCCTAGGAAAAATCAGAA AGAACAAATTTTTTGGATCATCTTCACTGTTAGTTTCTGTGAAATTTGTTTGTGCAATTAACCTTTATTTTCTTTGATTC TGTTTCCCAATTCCCAACATGTTTCAAGTTACCAAATGCATGAACTTTTTGACCTTGCTCAATTCTATTCAATCCATTCT TGGCCCTATTTTGATTGTAGTACCATAATTTAGGTACCTGTCATCTTGTCATATGCAAATTGGAAGAGGCAACCACATTA GCTCTTCGCCTCTTCCATTGGATGATATATATTGTCTTTTTAACCTAGTGAGTAGTGACAATAACAGTTCATCATTTTTT ATTTACTAAATG
CDS sequence (LotjaGi5g1v0073000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCCCAGACCGTTGTCCTCAAAGTTCGCATGTCATGTCAAGGCTGCGCCGGAGCAGTGAATAGGGTCTTGGAAAA AATGGAAGGTGTAGAATCATTTAACATTGATTTAAAGGAACAGAAGGTGACTGTGAAAGGAAATGTAAAGCCAGAGGATG TTCTGGAAACTGTCTCCAAATCTGGAAAGAAGACTGCATTCTGGGAAGATGAAGCACCAGCAGCAACACAAGCAGCTGAG ACTCAAAAGCAGCCTTCAGAAACCGCCACTCCTGACCTTGAAAACAAGCCTTCAGAAACTGCAGCTGTTGTCTCAGATGA GCCTGAAAACAAGCCTGCAGTTGAAACTGCAACTCTTGCCTCAGCTGAGCCTGAAATCAAGCCTTCAGAAACTGCAACTA CTGTTGCTTAA
Protein sequence (LotjaGi5g1v0073000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSQTVVLKVRMSCQGCAGAVNRVLEKMEGVESFNIDLKEQKVTVKGNVKPEDVLETVSKSGKKTAFWEDEAPAATQAAE TQKQPSETATPDLENKPSETAAVVSDEPENKPAVETATLASAEPEIKPSETATTVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 66 | 66 | 4.3E-23 | – | |
| PANTHER | 3 | 118 | 116 | 3.3E-45 | – | |
| PANTHER | 3 | 118 | 116 | 3.3E-45 | – | |
| SUPERFAMILY | 3 | 68 | 66 | 5.24E-17 | ||
| Pfam | 8 | 64 | 57 | 2.2E-16 | ||
| ProSiteProfiles | 12 | 67 | 56 | 14.224 | ||
| CDD | 12 | 64 | 53 | 3.22306E-14 | ||
| MobiDBLite | 59 | 136 | 78 | - | – | |
| MobiDBLite | 77 | 95 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi5g1v0073000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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