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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0074800 |
| Transcript ID | LotjaGi5g1v0074800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein kinase ATM; TAIR: AT3G09670.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|A0A1J7GM74|A0A1J7GM74_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12400219..12403648) extracted from Lotus japonicus Gifu genome v1.2.
GGGTGAATATGTATTTATTTTGTAAATATGGAAAGTAAAATTTCCAAATCAGCAACCACGCGTCCGTATCTCTGATTGGA AGCAAGACCAAGACCATAGGACCAAACGTTTTTTTCATTCTGGTACAAACAAAACTAACCAAGGTTTCTCTCTCAACAAC GTTGCTTGCTTCCACCCTTCTCTCTCTCTCTCTCTCATGAAATGTTCATTGGACCGTTCCTATCTCAATTGAACGCTTCC TTGTGCTCAGTTACTACATTCACCTCACTCCCTCTTTGCAACAAGTAACAAGTTTCTACAGAACCACAACAGGTTTGAGT TTTGAACTCTGAACTCTCTTTGTTTAATTATTCATGTTGTTCTGTTTATCAATGTTTTACAATTTACATTGTACAGAAGC TTAATTTGAATGCAAATGTCTGTTCTGTTTTGTGTTATTAGGTTTTTTTTGAGTGATAATGGATGTGAATTCAGATGAAA AACTTGACTTGAATGCTGATGTTGATTTGATTGGTCGGGAAAATGAGGCTTTTGGGGTTGAGCTGCCTGGGTTTGGTGTT TCTGGATCAGAAACCCTAGGTGGTGGTGGTGGGGGTGAGGTTCTGGTCCATGATCAGAAGGTTGGAGGTGATGGTGGAGG GGGAAATGGTTTGTTGGGTCAGAAGGTGGGGGGTGATGTGATGATGGGTGGAAGTGGGGGTGAGGGTTTTGGTGAAGAAA ATGAATTTGTGGGTGGTAGAGGGAACAATGGTTTGGAGGCTGGAGTGGGTGTTGTTGTTGATGGGAAAGAAGGTGAATTT TCATGTGGGTTGGTGAAGGATGAAGATGGGGTGAAAATTGACAAAATTCAATGTTCTGGTGGACCCCCATTTGTTTATGA AGGTGTGGAATCTGGTAAAGGTTTGTTTTTTAAATTTAATGGTGGTGTTCAGAATGGGGTGGAAAGTGTTGCTGAATGTG AGGAGGTAAAAAATGTTGCTTTGGTGAATTCAAGTAGTGCTGTTGTGGAGGAGGATGACAGCGAGATGGAGGAGGCTAGT TTGGTTCGAAAAGATCGCGTCGAAGATTCTCAGCCCTCAGAAGTTGCAACCTACAAATTACAGGATTCTGTTCCGTTCAT GGATGTCGATGCCAAGGAGTCTGTGTGTGTGAAAGACTTGTCTACAACAAGTCCCCTTGAGCTGGAAACTTCACATGAGT TGAAACAGCCAACCTTGCAGGTGGATTTGATTCAGAATCGAACCGCAGAATTCGGCGTTGCTGGTGGAGCAGGTCTTTCT GAGAATGTAAGACATGAGTATCATGGCTTCAATCTTGTTGTAGACTTCAATGCTTATGCAAACATGCAGGAGGTTGGCAT GTATGGGGAAACTGTGTTTTCAGAACCGAACTATCGTGTATCTGATTTAGTTTGGGGAAAGGTGAAGGGTCATCCCTGGT GGCCTGGTCAGATCTTTGATCACTCGGCTGCGTCTGAGAAGGCAAAGAGGCATTTTAAGGAGGACTGTTACCTGATAGCA TATTTTGGAGATCAGACATTTTCTTGGAATGATGTGTCAACTATAAAGCCATTTCAGATGCATTTCTCACAATTGGTGAA GCAGGACAGTTTGGAAAATTTCCATTTCCACCACGCGGTTGACTGTGCTTTAGATGAGGTCTCGAGACGGGTTGAGTTTG GCCTATCCTGTCCTTGCATGTCCGAAGTGTTTTCTAAGCTTGAAACGCAGGCAATTTCTAATGCTGGAGTCCGTAAACAA CTCAGCAGGAGAAGTGGTGAGGACAGGTTTATAAATTCAACCTCTTTTGATCCACTGAAACTTGTTAACTTTGTTAAATC ATTAGCACAGTCGCCACTTATTGAATTTGATAGACTGGATTCTACAATAGCAAGTGCGCAATTGTTGGCTTTCTATCGCT CCAAAGGCTATTCTCAGCTGCCTGGGTTTACAGTGCTTGATGGATTGTATGAGAAAAAGGAATGTGATGATCAAGTTGAT GAGGAACAACTGAGAACTGATCTTGGCTTTTCACAGACATCCAAGTATGTCTCTCAGCATAGAAAGCAGCGAGGCAGAAA GCGTAAACTTCTGTCAGATTTGATGTCTGAGAAGAACTCCAGAACTCAAAACGGTGGATTTTCATCAGAAAGCAAAGGGG GTAATAAGTCAATTTCGCAGTATTCTGGCAGGAAAAGGAAGGCAGCTTACAATACTTCCGATGATTATTTCCTTAATTCC CGAAAAAAGAAGCTCGTCCGAGTACAGAACGATTCTATACATGAGATGTGGTCTCAACTATGCTTGGCTTCCAAGAACCC TTTAGGAGAAAGTTGCTCAAGTGACATGGTATATTTCTTTTCAGAATTTAGAAAGTTCAAGTTCATTGGCCCTGATCAAT CTGTTTCTCTGGAGCAGGGAATGTCTTTGGAACAAATGCATGACGATGGTGAGACTGAGATCGGAGTAACCACTATAGAA GTGTCGTCTTCGATGACAACTATAAGGGAGCCTTGCAATGATTCTTATTGGACTGATAGAATAGTTCAAAGAGAGGAACT TTCACCCAAGACTCCAACTGAAGCTAATCCTCCCTCTCTCGAATCACAACCAGCTGCTGAAATTAACCAACATTTGGATT CTATGCAGCAAGATACTGATACAAATGTTGGATCAGAACCTTCCAAGGTTGCGGAACATTTAGAAGGTAGTTCCAATGAG GGCATTTCCCCCACTGCTCTGACTCTGAAATTTACAAGTTTGGATTCTGTTCCTTCCATAGCAGATCTCAACAAGATTTT TGAACGCTTCGGGCCCTTGATTGAATCGAAGACTGAACTGTTAGAGAAGACTAACCGTGCTAGAGTGGTTTTCAGAAGAC GTTCTGATGCAGAAACTGCCTTTAGTAGTGCTGGAAAATACAGCATATTTGGACCTTCACTTGTTAGTTACCGCCTCAAG ATTTTACCTCAGAAGCCCAAAAAAACAGGAAAGCGAGGCAGGAAAAGCAAAAAGGAAACTAGTTCTGCAGTTTAATACCA AGGTATTGATCCTTGGACTTTGAATAGTTGGTGTGTGAATACACCAATTATAGCTAAATAGGAGTATTATGCTAAGCATA GTGCGGCTAGTATGCCAATAGATAGAACTTCGTAGCAGACTAATTTATATGTTTAGAGATTTTGGGGTAGTATCAATTCT TTTTAATCATTATGGTGCAGATATTTTGGGACTAATTTTATAAAGTGCTGATAGGTTCAGCTGGTATATTACTGTTTGTC AATTCTTACTTGCCAAAGGTTGAAATGTTCTGATTATTACTTTTTTTGAATCACGTCTCAAGTTCAACTATGAGTTTAAT GGTTGTGCACTGTCGATGTAAAACATTTTTACACAGACGTCCAATAACTGAATGTCACCTATTCCAAAAC
CDS sequence (LotjaGi5g1v0074800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTGAATTCAGATGAAAAACTTGACTTGAATGCTGATGTTGATTTGATTGGTCGGGAAAATGAGGCTTTTGGGGT TGAGCTGCCTGGGTTTGGTGTTTCTGGATCAGAAACCCTAGGTGGTGGTGGTGGGGGTGAGGTTCTGGTCCATGATCAGA AGGTTGGAGGTGATGGTGGAGGGGGAAATGGTTTGTTGGGTCAGAAGGTGGGGGGTGATGTGATGATGGGTGGAAGTGGG GGTGAGGGTTTTGGTGAAGAAAATGAATTTGTGGGTGGTAGAGGGAACAATGGTTTGGAGGCTGGAGTGGGTGTTGTTGT TGATGGGAAAGAAGGTGAATTTTCATGTGGGTTGGTGAAGGATGAAGATGGGGTGAAAATTGACAAAATTCAATGTTCTG GTGGACCCCCATTTGTTTATGAAGGTGTGGAATCTGGTAAAGGTTTGTTTTTTAAATTTAATGGTGGTGTTCAGAATGGG GTGGAAAGTGTTGCTGAATGTGAGGAGGTAAAAAATGTTGCTTTGGTGAATTCAAGTAGTGCTGTTGTGGAGGAGGATGA CAGCGAGATGGAGGAGGCTAGTTTGGTTCGAAAAGATCGCGTCGAAGATTCTCAGCCCTCAGAAGTTGCAACCTACAAAT TACAGGATTCTGTTCCGTTCATGGATGTCGATGCCAAGGAGTCTGTGTGTGTGAAAGACTTGTCTACAACAAGTCCCCTT GAGCTGGAAACTTCACATGAGTTGAAACAGCCAACCTTGCAGGTGGATTTGATTCAGAATCGAACCGCAGAATTCGGCGT TGCTGGTGGAGCAGGTCTTTCTGAGAATGTAAGACATGAGTATCATGGCTTCAATCTTGTTGTAGACTTCAATGCTTATG CAAACATGCAGGAGGTTGGCATGTATGGGGAAACTGTGTTTTCAGAACCGAACTATCGTGTATCTGATTTAGTTTGGGGA AAGGTGAAGGGTCATCCCTGGTGGCCTGGTCAGATCTTTGATCACTCGGCTGCGTCTGAGAAGGCAAAGAGGCATTTTAA GGAGGACTGTTACCTGATAGCATATTTTGGAGATCAGACATTTTCTTGGAATGATGTGTCAACTATAAAGCCATTTCAGA TGCATTTCTCACAATTGGTGAAGCAGGACAGTTTGGAAAATTTCCATTTCCACCACGCGGTTGACTGTGCTTTAGATGAG GTCTCGAGACGGGTTGAGTTTGGCCTATCCTGTCCTTGCATGTCCGAAGTGTTTTCTAAGCTTGAAACGCAGGCAATTTC TAATGCTGGAGTCCGTAAACAACTCAGCAGGAGAAGTGGTGAGGACAGGTTTATAAATTCAACCTCTTTTGATCCACTGA AACTTGTTAACTTTGTTAAATCATTAGCACAGTCGCCACTTATTGAATTTGATAGACTGGATTCTACAATAGCAAGTGCG CAATTGTTGGCTTTCTATCGCTCCAAAGGCTATTCTCAGCTGCCTGGGTTTACAGTGCTTGATGGATTGTATGAGAAAAA GGAATGTGATGATCAAGTTGATGAGGAACAACTGAGAACTGATCTTGGCTTTTCACAGACATCCAAGTATGTCTCTCAGC ATAGAAAGCAGCGAGGCAGAAAGCGTAAACTTCTGTCAGATTTGATGTCTGAGAAGAACTCCAGAACTCAAAACGGTGGA TTTTCATCAGAAAGCAAAGGGGGTAATAAGTCAATTTCGCAGTATTCTGGCAGGAAAAGGAAGGCAGCTTACAATACTTC CGATGATTATTTCCTTAATTCCCGAAAAAAGAAGCTCGTCCGAGTACAGAACGATTCTATACATGAGATGTGGTCTCAAC TATGCTTGGCTTCCAAGAACCCTTTAGGAGAAAGTTGCTCAAGTGACATGGTATATTTCTTTTCAGAATTTAGAAAGTTC AAGTTCATTGGCCCTGATCAATCTGTTTCTCTGGAGCAGGGAATGTCTTTGGAACAAATGCATGACGATGGTGAGACTGA GATCGGAGTAACCACTATAGAAGTGTCGTCTTCGATGACAACTATAAGGGAGCCTTGCAATGATTCTTATTGGACTGATA GAATAGTTCAAAGAGAGGAACTTTCACCCAAGACTCCAACTGAAGCTAATCCTCCCTCTCTCGAATCACAACCAGCTGCT GAAATTAACCAACATTTGGATTCTATGCAGCAAGATACTGATACAAATGTTGGATCAGAACCTTCCAAGGTTGCGGAACA TTTAGAAGGTAGTTCCAATGAGGGCATTTCCCCCACTGCTCTGACTCTGAAATTTACAAGTTTGGATTCTGTTCCTTCCA TAGCAGATCTCAACAAGATTTTTGAACGCTTCGGGCCCTTGATTGAATCGAAGACTGAACTGTTAGAGAAGACTAACCGT GCTAGAGTGGTTTTCAGAAGACGTTCTGATGCAGAAACTGCCTTTAGTAGTGCTGGAAAATACAGCATATTTGGACCTTC ACTTGTTAGTTACCGCCTCAAGATTTTACCTCAGAAGCCCAAAAAAACAGGAAAGCGAGGCAGGAAAAGCAAAAAGGAAA CTAGTTCTGCAGTTTAA
Protein sequence (LotjaGi5g1v0074800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVNSDEKLDLNADVDLIGRENEAFGVELPGFGVSGSETLGGGGGGEVLVHDQKVGGDGGGGNGLLGQKVGGDVMMGGSG GEGFGEENEFVGGRGNNGLEAGVGVVVDGKEGEFSCGLVKDEDGVKIDKIQCSGGPPFVYEGVESGKGLFFKFNGGVQNG VESVAECEEVKNVALVNSSSAVVEEDDSEMEEASLVRKDRVEDSQPSEVATYKLQDSVPFMDVDAKESVCVKDLSTTSPL ELETSHELKQPTLQVDLIQNRTAEFGVAGGAGLSENVRHEYHGFNLVVDFNAYANMQEVGMYGETVFSEPNYRVSDLVWG KVKGHPWWPGQIFDHSAASEKAKRHFKEDCYLIAYFGDQTFSWNDVSTIKPFQMHFSQLVKQDSLENFHFHHAVDCALDE VSRRVEFGLSCPCMSEVFSKLETQAISNAGVRKQLSRRSGEDRFINSTSFDPLKLVNFVKSLAQSPLIEFDRLDSTIASA QLLAFYRSKGYSQLPGFTVLDGLYEKKECDDQVDEEQLRTDLGFSQTSKYVSQHRKQRGRKRKLLSDLMSEKNSRTQNGG FSSESKGGNKSISQYSGRKRKAAYNTSDDYFLNSRKKKLVRVQNDSIHEMWSQLCLASKNPLGESCSSDMVYFFSEFRKF KFIGPDQSVSLEQGMSLEQMHDDGETEIGVTTIEVSSSMTTIREPCNDSYWTDRIVQREELSPKTPTEANPPSLESQPAA EINQHLDSMQQDTDTNVGSEPSKVAEHLEGSSNEGISPTALTLKFTSLDSVPSIADLNKIFERFGPLIESKTELLEKTNR ARVVFRRRSDAETAFSSAGKYSIFGPSLVSYRLKILPQKPKKTGKRGRKSKKETSSAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 168 | 590 | 423 | 5.7E-186 | – | |
| PANTHER | 168 | 590 | 423 | 5.7E-186 | – | |
| Gene3D | 305 | 407 | 103 | 2.1E-22 | – | |
| SUPERFAMILY | 306 | 423 | 118 | 7.82E-27 | – | |
| Pfam | 312 | 400 | 89 | 9.1E-16 | ||
| CDD | 312 | 400 | 89 | 3.96213E-27 | – | |
| SMART | 312 | 373 | 62 | 4.2E-10 | ||
| ProSiteProfiles | 314 | 375 | 62 | 14.396 | ||
| MobiDBLite | 529 | 580 | 52 | - | – | |
| MobiDBLite | 550 | 580 | 31 | - | – | |
| PANTHER | 593 | 856 | 264 | 5.7E-186 | – | |
| PANTHER | 593 | 856 | 264 | 5.7E-186 | – | |
| MobiDBLite | 730 | 756 | 27 | - | – | |
| SUPERFAMILY | 757 | 848 | 92 | 1.05E-5 | ||
| MobiDBLite | 835 | 858 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0074800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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