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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0075000 |
| Transcript ID | LotjaGi5g1v0075000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-specific lipid-transfer protein; TAIR: AT4G33355.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|P10973|NLTPA_RICCO Non-specific lipid-transfer protein A; TrEMBL-Plants: tr|I3SLE9|I3SLE9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0075000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12412244..12413766) extracted from Lotus japonicus Gifu genome v1.2.
ACTATACCATTCTCGTTTCAAAAATACTATACAATTCTCGTGAAGAATAAGTGGACAAATTTTCTTTACCATATTTTACG TGATCCAAAGCTCCTTCCTTTCTCAACAATCCTCATTTTCACAAATATATATAGCTATCTCTTTTCATACACCAAAGCAC AAGAAAATCCTAGAAAACTCATTGAGAGAATACCAATTACAAGATGAAGAGAGTGATTGCAGTCTTTCTAACCTTGCTAG CTACATTGTTCCTCACAATGGAGCCAGTGCAAGCCTTCAATTGCCAAGAAGCGAAAGTATCATGGCTTCCGTGTGTTGGA TACCTCATTGGTGGTGGAGGCCCTTCAACTTCTTGTTGCAATGCTATTAAAAGTCTCAAATCATCATTAGGTACGAAAGA CGATCGACTTGCTGCTTGTGAATGCTTTAAAGATGCAATAAGCCTATTCCCGAGCATAAATGAAGACTTGCTTGCCTCAC TTCCCAAACGATGTGCTGTTGAGATAAGCATTCCCATAAGCAAGAACATGAAATGTAACAAGTAAGTTGTTAACTTTCCT TCCTTTCTAAGGATATGTTAAAGAAATATTTCATCAGTTCTTATTTATTAGCTATTTTTAAGAGTTTTTTAATCCCTAAA TATAAATCACTTCATAATATCTGTAAAATATTTAATTTATTTTTTCAAATCTACCACTTCATATTTAATATGAAAAAGAT GATAGGATTTTGAAAAGTTGTTAACTCCAAGAGATTTTCATGAGATAATTAAAGTAGAGAGAAAAATTAACTTAATTTTC AAGTTTTTAAATAATGGGGATTTGGGAAGCTTAATAAACTTTTTATATATTTTTTTCTAGTAATTAATTTTATTAATCTT GATAATTAAGTGAAAGTAACTGATAAATATATAAAATATTCAATGAAAAATAAGTATTATTAATAAAATATGAAAAAAAT TTAATATTTAATTTGTTGAGTTGCAATAAATGTCAGCTAATTTCTGTACCAAAAAAAAATGTCAGTTAATTTTACAAAGG TGAAAATTTCCATAGGAAAAGAAAACATCTACTATATGTGAATTAAAAAATTATAATAACTTCTTTTTTCTCAACAAAAA AATATAATTTATATTATTGAAATTAACAGTAAGGTTATTTTTTTGGTGAACAAATTAACAGTAATGGTTGATATTTAAAA ATGGAATTAACTTAACCTTGATACACTCACTCTTAAGGCACCGCTAACAAAATATCTCATTAATTACTTCATCAAATCGT TAATACCGTTATTGTCTAATTATATTGATACCTTGTTCTTATTTGCAGCATTCAATACAATGGAGGAATCAATGTAATCA AAGGGATATAGACTTTGGTTGCTCTTGTCAGGGCAAAAGTAATGTAGCCTATTATATGTGGGCATGTTTATGAAATAAAA GTTTGTTTTATAGACAACTTATTTCTATGTTTACTTATCCATGCATCTTTATTATAAAATTAATCAACAAAATTTTGTGT CGT
CDS sequence (LotjaGi5g1v0075000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGAGTGATTGCAGTCTTTCTAACCTTGCTAGCTACATTGTTCCTCACAATGGAGCCAGTGCAAGCCTTCAATTG CCAAGAAGCGAAAGTATCATGGCTTCCGTGTGTTGGATACCTCATTGGTGGTGGAGGCCCTTCAACTTCTTGTTGCAATG CTATTAAAAGTCTCAAATCATCATTAGGTACGAAAGACGATCGACTTGCTGCTTGTGAATGCTTTAAAGATGCAATAAGC CTATTCCCGAGCATAAATGAAGACTTGCTTGCCTCACTTCCCAAACGATGTGCTGTTGAGATAAGCATTCCCATAAGCAA GAACATGAAATGTAACAACATTCAATACAATGGAGGAATCAATGTAATCAAAGGGATATAG
Protein sequence (LotjaGi5g1v0075000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRVIAVFLTLLATLFLTMEPVQAFNCQEAKVSWLPCVGYLIGGGGPSTSCCNAIKSLKSSLGTKDDRLAACECFKDAIS LFPSINEDLLASLPKRCAVEISIPISKNMKCNNIQYNGGINVIKGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 114 | 114 | 9.7E-33 | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 114 | 114 | 9.7E-33 | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 4 | 17 | 14 | - | – | |
| Pfam | 10 | 102 | 93 | 1.6E-5 | ||
| Phobius | 18 | 24 | 7 | - | – | |
| Gene3D | 24 | 116 | 93 | 2.4E-27 | – | |
| Phobius | 25 | 126 | 102 | - | – | |
| PRINTS | 26 | 42 | 17 | 5.2E-16 | ||
| SUPERFAMILY | 26 | 114 | 89 | 1.44E-21 | ||
| CDD | 27 | 112 | 86 | 1.77973E-26 | – | |
| PRINTS | 46 | 60 | 15 | 5.2E-16 | ||
| PRINTS | 67 | 82 | 16 | 5.2E-16 | ||
| PRINTS | 84 | 101 | 18 | 5.2E-16 | ||
| PRINTS | 102 | 113 | 12 | 5.2E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid transport | The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi5g1v0075000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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