Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0075600 |
| Transcript ID | LotjaGi5g1v0075600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein DnaJ; TAIR: AT2G35795.1 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q8RV04|TI141_ARATH Mitochondrial import inner membrane translocase subunit TIM14-1; TrEMBL-Plants: tr|B9MT90|B9MT90_POPTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0075600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12485878..12487154) extracted from Lotus japonicus Gifu genome v1.2.
AAGGCAATTAAAATTAAAAAACAAAATAAAAATAGAAACGAGGTTCATGTTCCTCCTTGAACTCAACCCTCTCTTCATGC AAGGCAAAACCCTATTCTATACGAATTAGCCCTCTTCAATTGTCCAAGGTTTCAACATTATGGTAAGCTCTTTCAATTTG TGTAATGCTTATTGATGTTATCTTGATGCTATAGCCCTTTTTGTTGATTTTCAATTTGGAACAGGCTACACCTTTAATCG CAGGAATTTCTGTGGCTGCTGCAGCTTATGCTGGTAGGTGTGCTATACTGGCTTTGAATGCATTGAAGAATCGTAAATTT TATGAAGGTGGTTTCGAGGTTATCATGACTAAGAAAGAAGCAGCTCGCATACTCGGTGTCAGGTTTGGTCTCTCTTCATG ATACTTCTGTTCTTATTGTCTTGTTAATCTTCATGCCTTAGACTGACGATGGTGGTTTTGAGTATTTCTCTGAGTATTTA TGTGAATGGTATGAATTATTGATGTTGTATGTATTTATAATCTTTAGGATTGCAACCACCCAACATATTCTTTAAAAAGC TTTATGAGCTTGAATTGTGTCTTGCTTTGTTCATATTTTCCTGCTATGTAGTATGGAATTTTATTGGTTAGTATTGGATT TTTGTTCCCAGTCATGATCTTGACAAAATTTTAACTGAATGTGTTTTGTTTCTCTTGCTGATTTTCAATTCTTACTATGG CAGAGCGCACGCTCAAACGGATAAGATTAAAGAAGCACATAGAAGAGTGATGGTAGCTAACCACCCAGATGCAGGTGGAA GCCATTTCCTTGCATCCAAAATTAATGAAGCAAAAGATGTGTTGCTTAGTAAGGGGAAGGGTAATGGGTCAGCATTTTGA AGCCTGCTCTCAGCTCATTATTTGGACAGTTCAGACAGCGGTCCTTACTAAATCTCAATAGTATATTGGTCCTTGCTTAA TTATTTCTGGTAGACCCAATATATAGGGACAACATAGTCAAATAGAACATGCCTAGGCTACCAATTGGTCCAAGTGATAA AGCTCTATTGTAACTTGTTTCATTAAAGTTGAACCTTGAGAAGGTTATCAATTAAAGTGATTTTTACTTGCACTTTTACC CATTTTTGCTCCGTAATCCCTTTTTCAAGTTTGTGCCCCTTCACCATGATGTTTGACATGCATTTCACTTTTGAATATAA TCGATTCTGTATGTTGATTTTTTTGGTATTACCTTGCTTAAAAGTTATCTTGAATCCTTAAGTGTTGAATAATAGAA
CDS sequence (LotjaGi5g1v0075600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACACCTTTAATCGCAGGAATTTCTGTGGCTGCTGCAGCTTATGCTGGTAGGTGTGCTATACTGGCTTTGAATGC ATTGAAGAATCGTAAATTTTATGAAGGTGGTTTCGAGGTTATCATGACTAAGAAAGAAGCAGCTCGCATACTCGGTGTCA GAGCGCACGCTCAAACGGATAAGATTAAAGAAGCACATAGAAGAGTGATGGTAGCTAACCACCCAGATGCAGGTGGAAGC CATTTCCTTGCATCCAAAATTAATGAAGCAAAAGATGTGTTGCTTAGTAAGGGGAAGGGTAATGGGTCAGCATTTTGA
Protein sequence (LotjaGi5g1v0075600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPLIAGISVAAAAYAGRCAILALNALKNRKFYEGGFEVIMTKKEAARILGVRAHAQTDKIKEAHRRVMVANHPDAGGS HFLASKINEAKDVLLSKGKGNGSAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 105 | 105 | 3.0E-52 | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| PANTHER | 1 | 105 | 105 | 3.0E-52 | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 105 | 88 | - | – | |
| Gene3D | 32 | 100 | 69 | 5.7E-24 | ||
| SUPERFAMILY | 37 | 97 | 61 | 2.49E-16 | ||
| SMART | 45 | 99 | 55 | 9.0E-7 | ||
| ProSiteProfiles | 46 | 99 | 54 | 9.221 | ||
| CDD | 50 | 94 | 45 | 1.43065E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0075600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…