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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0076100 |
| Transcript ID | LotjaGi5g1v0076100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein; TAIR: AT3G09730.3 POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein; Swiss-Prot: sp|Q6NQ99|POLAR_ARATH Protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION; TrEMBL-Plants: tr|A0A0B2SNY0|A0A0B2SNY0_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0076100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12531628..12534755) extracted from Lotus japonicus Gifu genome v1.2.
TGGCTAGCCCCTTTTACTTTTCTCTTTTACAGTGCACGATCTTCAATCTGCAAACTAAACACAGACACTCATCACTCATC AGTAATTAGGCGTGTAACAGTGAAATCTGCTCCCTCCCATTTTTCTGAATCAATGTGGCACCTTCTCGTAGCCGTTGCGG TGGCCGGAACCACTTGTTTCGCCACAAACCGCTTCTTCACCCCCAGGAACACCGATCACAATGCCAATGCCGACGACCCC AACGATCATGAATCAGAGTCCTCCGAACGCGATTCTCTGACCCAAAACGGGTCTCCTTCTAAGCCTAAGCAGAGGAAGGG TCATAGATTGAGACAACTCTTTTGCTGGAGGAAAAGGAAAAATCCCAACAACAACAACATTGCTCCTGCAAAGGCTCCAC TTTGTTCTCCTGAAGGTCAGATCATTGTAATGATCGATTTTTTTCTATTGGGTTATGCACGTTGTAATTGAATTTTGAAA ATTTTGATGGTATTTTAGGTGTGTTGATGTGTAGAGATTATAGTTTTTCTGATCAATGTTATTGTAACTGTTGTAATTTG CAATATTCTGATCAGCAACTGAAGGTTTATGTGTGGAAAATGTTCCAGAAACTATGCATGTGATTGTTGTTATCATCATG GCATAAAATTGAGTAATTCTTCAATATAGGAAAAGTGTGTATTGGTGTGGGTATGGGAATATTAATAAAAAAAACTCATC ATAACATGAAAATTACCAAGTCTTTAACCGATTCCTCTTGCTACTAGTGGTAAAGAGTGTGGCTGCAGTCAGGGTTTTAA ATTGCGGTTGGGCCGCGGCTGTATTGCGGGCAAATGTGGGTTGAAACGGCTGCAATTGCGGTTGTGATGCTGTTGCGGAG CATCAAAACCGGTTACATTGCTGCCGCAATTGTGGTTGCAGACCGCAATTCAGAATCTTGTACAGTGTTTGAATTTGTGA GTGAAAAAATAAACTGCAGGATGAATGTGCTTAATCAATTTCAGTTGACTCGAATTTGTCATACTGTTATGAATTTTGTG TCCATATTTTCTTATTAGTTGTTATGGTTTGTTTGTTAGCTGGGGTGTGCTGTTGTTTTGGCAGTTTTATTGGAACTGCA CTATCTACTTATCTGCATTTTCGCATACTAATAGCTAAATTAGTTGTTGATCTATGTTATACAAGTATTGAACATTGCAA TTAATGTCTTTCTCTTTGTAAACATGACATTTTGTTGTTCTAAATCTGCGAAAAGTGAGCTTAGCATTCCATTGTTTCCT TCAGGTAACTCCTTATTTAGTTTGGGACTTAGCTTCGGCATCATGTTTATGATGTCTGCACGAAAAGCTGAGATTGATGA GCTGAACAAGACCATGGATGAGACAGCTAAACTTGTTCAGGAGCTAAAATCTGAGCTCAACAGAAGAAAATCATCCCGTG CTCATGAAAATTTGGATTCTGTTGGCAATAGTGATATGAACTCTCGCAAAATGAGTGGCAGGCATGAACTAATGCTCACC AAGACAAACAGTGAGCTCAGAGACAGTGGTGAATGTGGAAGTAGTACTCTTACTGAAGAATCAGAACCAGGGGTTCTGGA AATGGATCAACTGGAAGCAGAACTAGAATTTGAACTCCAAAAGCTTTCTGGGTGCACTATTGACAGCCATCGCCATGAAG AAATAAAGCCAGAATTAGAGAAGGTGAACTTCTTGGGTAGTCTTTCTTTTGTTTATCCCACACTCCTAATATAAATATAA ATATGCCCTCTATGTAGTCTCCAGCTTCTGCTTTTATTGAGATAGTTGTGTGTGGTGTCAATTCTACAGTGCAATATATT TTTCATTTCTCTTTTTCTCTTGAATGTAATATGTTCTTTTTCTTTAGAGAATATGTATTGATGAAGCACAGTTTTATGTC TAGTTATTGTGGTCAGATTAATGTATAATTGGAGAAATATGCTTTTAGACTGCTTAAATCTTGTTAATTCTCTGCCACCT CCCACAGCAGCTTGGGAGGGGGAACCACTAGGCACCCATTTAGTTCACCTTTTTCGGTATAAGGTTTTGCTTGATTGAGC AACTTCTCATCTTCATGATTTCAGCTTGGTTTTAATTGATAAAATACTTTGCAGCTTGATAGCGATGGAACAGATGACTG GGATTTCAACTATTCGCAGTCCCATGGAGTGTCGGCATCCGAATTAAATCAGAAATTAAGCCAATTACTCATTAAACAGC AGGAAGACCAGATCACTGAGCTGGAATCTGAATTGCACCAGGCTCAATCCAAGCTGCATGAGAAAGAAGCTGAACTCCAG GCACTAAAGGACTGTGTCAAACGCCTTACTGAGCTTTCGCTATCCGCAGTTTCAGGCATGTAATACATATTTAATTTTCA TGCTCTCAAACTCCTCATAGGCTTGCATGCAACTCATTGGATTACAGTTTGGTCTTATTTGTTTGTTTGTTTTAAATGTT CTGAATGTGTTCATCTTAGAGGGTGAAGGGTTTGTGAGAAAAAAAAATGCCTATGCAAGATTATTGTCCTTATCTCTACT TTGATCCTTTTTATTTATAGACAATATGCAATGCCTATGGAATGCTGCTTTATCTCCTTGAAGCTGTATTTCATTGTAAA TTTTTGTATCAGTAGGCATTATTAGCCGAAGCTGTCTGACTCTGCTTAATTATCTCTCAGATGATGAAACTCAGACTCTG ATCAGCGATTGCGACAACAATAATGCGGAATCTAAGTCCAAGCAATCAGTTCTCAGGGCAAAAAGACCGTTGGATTCTGA ATCTGGCTTGTGTTACATGTGAAGAAGACTCTGACCTCTGTAGCATACAGAAACAATTCTGTATGCAGACAGATAAAGCA CTAATTCAGTAGGCAATTTCTTCAGATTAGAAGCTAATTATTAGGCCTAATGTAGTGTTTGTATATGCGTATTAATTTAA ATAGATACAGCTATCAAATTAGCAACTTGTACTTGGATATTGATTGTTCATTCTTGGATATTAACCCATGAACATGCAAA TTTTATTGATATAATAGTAGTTCAATGGGTCTGATTATTTGATATATTTTATGTTCTACTTTCTGGGACTGTACTGAACT GAAATGAC
CDS sequence (LotjaGi5g1v0076100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCACCTTCTCGTAGCCGTTGCGGTGGCCGGAACCACTTGTTTCGCCACAAACCGCTTCTTCACCCCCAGGAACAC CGATCACAATGCCAATGCCGACGACCCCAACGATCATGAATCAGAGTCCTCCGAACGCGATTCTCTGACCCAAAACGGGT CTCCTTCTAAGCCTAAGCAGAGGAAGGGTCATAGATTGAGACAACTCTTTTGCTGGAGGAAAAGGAAAAATCCCAACAAC AACAACATTGCTCCTGCAAAGGCTCCACTTTGTTCTCCTGAAGGTAACTCCTTATTTAGTTTGGGACTTAGCTTCGGCAT CATGTTTATGATGTCTGCACGAAAAGCTGAGATTGATGAGCTGAACAAGACCATGGATGAGACAGCTAAACTTGTTCAGG AGCTAAAATCTGAGCTCAACAGAAGAAAATCATCCCGTGCTCATGAAAATTTGGATTCTGTTGGCAATAGTGATATGAAC TCTCGCAAAATGAGTGGCAGGCATGAACTAATGCTCACCAAGACAAACAGTGAGCTCAGAGACAGTGGTGAATGTGGAAG TAGTACTCTTACTGAAGAATCAGAACCAGGGGTTCTGGAAATGGATCAACTGGAAGCAGAACTAGAATTTGAACTCCAAA AGCTTTCTGGGTGCACTATTGACAGCCATCGCCATGAAGAAATAAAGCCAGAATTAGAGAAGCTTGATAGCGATGGAACA GATGACTGGGATTTCAACTATTCGCAGTCCCATGGAGTGTCGGCATCCGAATTAAATCAGAAATTAAGCCAATTACTCAT TAAACAGCAGGAAGACCAGATCACTGAGCTGGAATCTGAATTGCACCAGGCTCAATCCAAGCTGCATGAGAAAGAAGCTG AACTCCAGGCACTAAAGGACTGTGTCAAACGCCTTACTGAGCTTTCGCTATCCGCAGTTTCAGGCATGTAA
Protein sequence (LotjaGi5g1v0076100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWHLLVAVAVAGTTCFATNRFFTPRNTDHNANADDPNDHESESSERDSLTQNGSPSKPKQRKGHRLRQLFCWRKRKNPNN NNIAPAKAPLCSPEGNSLFSLGLSFGIMFMMSARKAEIDELNKTMDETAKLVQELKSELNRRKSSRAHENLDSVGNSDMN SRKMSGRHELMLTKTNSELRDSGECGSSTLTEESEPGVLEMDQLEAELEFELQKLSGCTIDSHRHEEIKPELEKLDSDGT DDWDFNYSQSHGVSASELNQKLSQLLIKQQEDQITELESELHQAQSKLHEKEAELQALKDCVKRLTELSLSAVSGM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 33 | 33 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 316 | 299 | - | – | |
| MobiDBLite | 25 | 65 | 41 | - | – | |
| MobiDBLite | 31 | 46 | 16 | - | – | |
| PANTHER | 59 | 315 | 257 | 8.8E-99 | – | |
| PANTHER | 59 | 315 | 257 | 8.8E-99 | ||
| Coils | 118 | 138 | 21 | - | – | |
| MobiDBLite | 138 | 163 | 26 | - | – | |
| Coils | 260 | 308 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Asymmetric cell division | The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity. |
Expression pattern of LotjaGi5g1v0076100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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