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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0077300 |
| Transcript ID | LotjaGi5g1v0077300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G09760.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10; TrEMBL-Plants: tr|A0A151U466|A0A151U466_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0077300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12634125..12641090) extracted from Lotus japonicus Gifu genome v1.2.
CTCAATTTCCTAATTTGACTTTGAGCACCAAATGTAAATATATAACAAAATCATGAGAGTGATGTTATAGCCGCCCAAAT GTCAAATATGACAAATATTTCGTTAAATAAAATTTCGGATTCAAGTCTTATAAATGAAAGGAAAAAAAGAAAAAAAAAAC TCCCTCAGAAAGCTAATCTCATCATGATATGAATGTTCCTAACTAGACATGATTGCCCGGTAGTGAATATATTTATTGCA CATAAAAATGCCTAACCATGTATTATATATGATGCAAGACTTGTATTTTGTATTTAATTGAGAAAACATGTATCATGTCA GCTTCATGCTTATTCCATAAGCTGTTTCCATGGTGTCTCTCTTCTCCACTACTTGCTATATACTGTCTTTGCTTCTCTCC AGCGAATTTCCAGCTCCCATGATCAAGGGAAGGTTTCATCTAATTTCTTTCCAAAAATTTAAAAAAGTGTCTCAGTTTCC AATTTTCAGCTCAAACTTGTGCAGCTTTTCCTCTTTGGTTTGGTGGGTTCCCCATTGACTATGGCAACTGAAGGTGCAAA CTTTTCCAAGGATAATAATAACCAAGGCGCTGGCACCATTGAAGATAAAGTTGATATCCAAATTCAGAAGGTGCTTCTAA TGCTTCTATTCTTTATCATACTTTTGATTAACACACTTGAAGTTGAATATTTGTTTTCTTCATCTGAAGCTTGTGGGTAT TCTTTGTATGCATTGACTTTACATGTTTTATAGGAAAGCCTGCCATATTGGCATCTTGAAATTTTAGCAGAGATAGTAAT TGATATCTTACTAAAGGTTGAGAATTCGGTTTTGCAAATTGCTCCAGAAATTAGGTAGATTTTAGAGGTTTAAATATCCC TGAAACTTTACCATAGCAATGTTGCCCTGCTTCATAATTTGTATCATGCTGAAATGTTTCAGGCTCTCTGAATTCTCTAA CTCTTAGATTTCAAGTTCAATCTTTGTTAATTGGCAATTGGATAAATCTATTTGACATAAACTTTTGACTCCAAAATTTC CTAATAAGTCATGACTCTTCAAATTTAGATACCTTGTCATTTGTTCTAAAAATACTCTAGAAAAATTGGGGGGAATTCTC ACCAAACTGAGTTACTTGATAAGAATCAACAAAGCATGAAAAACTTAAAGTTTTTTTATTAGTGTTGTTGCTTGTGACTA TGGAAGATGGGGCTCCATAACTAGATTCATGAAAGCTTCAACAATTTCAATGAATGCCATTTAATTGCCGACTTGAATGA TTCTGCCTCTCCCAGCCTCTCTGTGATGTTATCCAAACAGTGACATCATCATAAATCACATGACGTTCTTTCTCATCTAC TTTGTACATCTCCCTATGCAGTCAAAGACATCATTTTTGTAACCAGAAAATGATTTGTAGAAATCTGGATAGTACAGACA TCCAACAAACACTGAGGATGAGGATGAGAAAGGAAGAGAAGAGAGTGAACTAATTGATGTGATATATGATAGAAGAGAGA GGTAGAGAAAAAAAAAAATAGTATCATTACAGTTTCTAACCACTACTCTCTGCAACAAGTTTTTATTTTCATTTTTTGTA GGTGGAGGTTATTAATGATGTATATATCTAGTGAAGATAACTTCAATTGATTGAACCGAATTTAAGCATCCTCCAACTCA ATTTCTGAAATATTTGCTCACTATAAGATTTATTACTTTGTAGCTTAATGAATAAACTTCATTCTTATATAGTTGTGGTT TTTTTGTTCTTCATATATAGGATCTAGTGTCACCTGAAATAACTGAGGAACTCACAAGTGGACAATATGAGACAAGGCCT AACATTATATTGGAGATACCTACAATAACTCAAGAGGAAGCAAGAGAAGATTATTTGAGAATAGACATACCTCCAACTCC ATCTCCAAGAAGAGTGATATTTCCCCCTTGTCTAAGTCCTGGTTTTTCCAGAGCCAATGAATCTCCTGGTCCTTCCTCAT CGAAAAGTAGATCAACAATTAAAACCTTTCTTCCCAAACTCAGCTTTAAATTTCTCAACACAAGTTCAGATATTGAAAAA GCTGCATTCCTAGCACTTGAAGGTTCTGCACCAAAAAAACCTTTTCTTTCAAGGACATTATCTCGTACCAAAACTACCAC GTCGTCCTTACCTGCAACACCAATTGCTCATTCACATCCAGGGTCTTTACATGGAGGCAACATGGCTTATCTAGCAACAA CTGTTGTGAGTAACTGCAGTTTTTGCAATATGTGACATTGTAATTATCATAGTTGTTTTAACCTAGCCTTGTATTCTTGA AACCAAGTTTTCTGATTTAACTGTATGCATTTATTGTCTATAAGACTGTAAACTGTTTTATTGGTCGCTGAAGAAACCAG GATTGAGTAACATGGAAACAATATTTTCTATTTTAGATAGTCATTTTGTCCCTAAAACTTAGTCCCTAAAAGATGGAAAT AGGCAAAGATAAAATGCAATCAATTTAGTCATTGAAAGATGAAAATCATGATTAATATAATCCTTGAAAGATGAAAAGTG ACCATCCATTTTAGTCCTCGAAGACTAAAATTAAATTTGGTTTCATCTTTCAGGAACTACTTTGCCTATTTCCTTAGTAA GGGACGAAAGTGACGGACTTAAATTATATCCTCCATGAACTATAGTGACTATTCACTCTCTATTTTATTATGGGGTCCAC ATACATCCATCTGATGATAATTGTGTAAAATATTAGCTTAAATCATAGAGCTCAATGAACTAAATGGTTTTCTTCAAGAG ATCCATCTTTTTAATTCTGGCCAGTCAATGCTTTATCCCTTTCTTCAAGTTACTTTTAAGTCTGCATCACTTCAGCTTGA TAAGGAAAATGCTTTTGTGCTTCTCAAAATCACCATTAGACATTTATCTATCTTCAGGATAATTTGTTATACACCTACAT GATTGTATCTGATATATACTTCTTCCCTCATTTTACAGGAGAAAGGAGTGCAATTACCAATTCATCGTTCCCGGTCAGTT CCTTCATTTACAGAAGAAGGTAATACCACACCTGTAGGCGCAAAGTTTCGTGTAATTCCGACCACGCCACGAATCGATGA GAAAATTGCCACAACAACATCTACCAAATCTCCAACTGATGATGCTGGTAAGAGCTATTTATCATATTTGTTTTATAAAA GATTTGTCAACCTTAGAATCTTTAACAATATTTTACTTGTCCTCACTAAAATTATATGGATTTGACTCTTCTAAAATTGA AGAGAAATTGAAGAGTCACTTTAGAGGGCAAAGCAAGCAACCACAACCCTTAATTGAAAAACCAATGGTTAAAAGTTAAA GAACATCAGTTTGTTATACATGAATAAGTGTATTACCGCTATCTCAACTGAGTCGATCAAGGGTTGTGATTGCACTTTAC CCTCCAAAGCGAGTCCCTCACTTTAGAGGATTCAATCCAAGTCAAATATATTGTTCTCTCATTCATAGTGGAGTTGCAAT ATCTTCTCTGGTTTAATTTACATAAACTTATTTTTTAGGATTAAACTGACTTTGGTAATGCTGCTAATTTCCACATATAT CATTTATTTATTGGTTTAAACCTCTAGATTAATTCTTTCAATAACCAACAAGTGCATCTGAGTATTGTGGTCAGTTGAAA ATGAGGATGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTGGGAGAAGGTGCTAAT ACTTTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAGGATTAA AGGTAACAGAACATGTGATGTTTGCAAGCAAGAAGTTAAGAACCTACCCGTCACTCTTTTACGAGTTCAAACTGTTCTAG GGAGCAGAGGTCAGCTAGCAGAGACTTCTCAATACAGGCAAGGGCAAATTATTCTTGTACTTGACTAGTTATTTTGGTTT TGGAAAACTTTCTAGACTTTCTAGCGATGATTTTATGGTTACGAACTTTAGGCCGTATTTCATTGACAACTTACAAGCTT CTGCATAAGCGTTATAAACTCATAATAAAAACTACTGATGATTTGTTATACTAATAGACTATACATCAGTTTAGTTTGGC ATATAAAGGACTTCAAGTTCAAGCTTTTCTGATCCCTTATGCTGACGAATTTGGATTCTGTGTAGTCAAAGAATTCCTAA ATTCACAGTCAGAATCTGAGCTGTTGTATCAAAGATCGGACAGCTAAAATCTTAAGCTAATTTCTACCGACCGATCTTCA TAAAATATATGAGCCGACCGATCTTGATCAAACAGTGCATATTTCTTGACTTCATGAATGTAGGATTTCTCTGACTGCTG GTAACCCAAATCCTTGTTCTGATACAACATTACTGATACAAAACTTCTACAGGGTTTTGCAGGATGCCCCCATTCTTGTC ATTGTCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTAAGTTCAGCTTCTCTTGTAGATAGCATTCCCTT TAGCCATATGAATTTCCAATTTTATCGATGGACAGGTTTCAAAGATGGGATCTAGTGCTATTGCTATGTCTCTCCCATTT TCTTGTATACTTGGTCTTCTTGCGAGCATGACCGCTACAACAATGGGTTAGGTTTTTTTCTACTTCTGTTCAATGTGTAC TTGAATTCCTCCTATGGTATTATACAATTTACATTAATTCCTCCAAAATTTTCTTAGTGAGGAGAAAACATGTTTGGTTT TATGCAACTGCTCAGTTTGGTCTGGTGGCTCTGGCTGCACATCTTTTCTATTCATTGGTAAGAGATTCTTTTTTGCAACC ATAGTTATGGTACATTTTCTGTTTTTTGTATCTTTTCAGCCCCCTTCTCTATTTACTCGTCTTCCTGTGTGTTTGGTCCC ATGCTTGAGAGTCTTATAATCAATTCTAATTGACCAGTATTACTTTTAGACAGTTATATAAATGCATGACAATCGACTTA GAAAATTGACTTTAGTCGCAAACTCAATTCTGAAGAGAGATTAGAGAGAGTAGTTACTGAGGTGAACTTTATTATTTGTG GGATTTTATGATTGGATTTCGCAACATTACTCTATAGAAATAATTTTTCCCATAAGTGTATCCAAATAAAAATGACTTCA CTTTTAACTCATTTTTACCAAAATCAATTCTGACAACGTTGATCCAAACACGAACTTCCTCATGAAAATGTACTTAAAAG TAGCTTGCTTGTGGTTTCAAATGTTGGTTTTCTCAATGAATCAGTAAACGATTGTTCGGAATTTGCATATCAAGATCTGT CTAATATCAAACATTTTAATACATTAATTTGGAATGGCAGGCTCATATGCAGGCTGTTATAGCTATCCTACTAGCTACAT TTTCTGGGTTTGGAGCTGTTATGTTTGGAGCTTCTGTTCTTATGGAGATTTTGAAGTGGAGGGAAAGATGGCTTGCTGCC CAGTTGAATCGACAGAGCGGTTTGCAAGAGGCTGTGGTACCGCCCGAGCAATCATCTGCAGCCACTCATCAAGCTCAGGC TGATCCTCAACATACTGAAAGTAATAGAGGAGTCACCCCTGCCCAAATGAGCTAATAGAACACTTATTCAAGATTTTGCT TGAAAACTGTCCTCATAAACTTTTCTCTAGCTGTAGATATAAGTATATATTGTATATAGTCAAGTTTGAGCACATTGAGC ATTTGTGAGTTGACATTAATCGTTTAACCCCTCGAACATGAGACCTATGCTTAAGTTAGACCTCATGCAGTCAATGGTGG AAACAAAAACAAATTCACAATGTAGTCAAGTTTAACATCTGTAGATGGTAAGGAATCTTGTAGTGTGAAATTTCTTTGCA ACGGATCTAGTCGAAGGCCTCCATGCATTTCCATAAAGTTGGGACAGAGTTAGACGCTTATAGTGGTTCTAAACATGGAA AAGAAGGGTTTCTCATCTAGACATCATCCTGCATTCTTATTCTAGATATCTAGTAACTAGTTCCTTCTCGATCTTAGCTA AATGGTTGTCTCAGGCCATCCTACGAGACAAAAAAGATGTTGAAGTTAGAATCAAAAGTGGAGGCTTGGAAGCATCCTGA TCTGAATGTGTTTTTTTCTTTTCCTGGTATGTGATGTTGAAGTTGATTAGAGTAAGCGAGCTTGAATTTTTTCGAGTATT TGCGGTGCTGAGATGTATTGCTCTTAGTTAAGGTTTGATTACCATTTGCTTTGTATGTACTATTTGGTTTGGCTTGATGC CTTAACCCAATCTCTCTTGACAAAGAGAAGTATCTTTTTAGTTTTTATGTCAGACAAAATTGATCTTTTTTCCATTTCTA AGGACTCACTCCTTGGACACATGAAGAGAATTCTGAGTCAGAGACTACTGTTTTGATTTATGTGATTGATGTACATATAT ATCTTTCTATAGATTCCTTGAGGTCTACATAGTCCTGTGTAAGCATGATGCATTTCTTTGAGAAATAATTTGATTGTCTA TTTGGGAAGCCACCAAAGAAGCATCATGAATTGTAATTCTTGGTAGAACCGAATCTGTAATTGTAAGTGTGATTACTTGC TATACCTTGAAAATCTAAAAGTCGTGTTCTATATGCAACATTGAAAGCTTATCCTAAAAATTTCTAAAACGTATGTGGTT TATCTTGAGATGAAAGGAAGAATTATAACAAGCATGAAGAGAATTTTGAAGCCAACACCAACACCAACAAGCTCTGGAAA TTAAGGAAAAGGATTAAACATCATTTGTATCTCCTACTGAGAGTCACCATGATTTCAGACAAGCAATTGAGAAAAAAAAA ATTAATGTAGGAATGCAGTACATGAAAGTTTTCTTCAGAAGCAACACAAGAGACTCTCTTTTATTTCCTTTTTATTATTT TCTTCC
CDS sequence (LotjaGi5g1v0077300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACTGAAGGTGCAAACTTTTCCAAGGATAATAATAACCAAGGCGCTGGCACCATTGAAGATAAAGTTGATATCCA AATTCAGAAGGATCTAGTGTCACCTGAAATAACTGAGGAACTCACAAGTGGACAATATGAGACAAGGCCTAACATTATAT TGGAGATACCTACAATAACTCAAGAGGAAGCAAGAGAAGATTATTTGAGAATAGACATACCTCCAACTCCATCTCCAAGA AGAGTGATATTTCCCCCTTGTCTAAGTCCTGGTTTTTCCAGAGCCAATGAATCTCCTGGTCCTTCCTCATCGAAAAGTAG ATCAACAATTAAAACCTTTCTTCCCAAACTCAGCTTTAAATTTCTCAACACAAGTTCAGATATTGAAAAAGCTGCATTCC TAGCACTTGAAGGTTCTGCACCAAAAAAACCTTTTCTTTCAAGGACATTATCTCGTACCAAAACTACCACGTCGTCCTTA CCTGCAACACCAATTGCTCATTCACATCCAGGGTCTTTACATGGAGGCAACATGGCTTATCTAGCAACAACTGTTGAGAA AGGAGTGCAATTACCAATTCATCGTTCCCGGTCAGTTCCTTCATTTACAGAAGAAGGTAATACCACACCTGTAGGCGCAA AGTTTCGTGTAATTCCGACCACGCCACGAATCGATGAGAAAATTGCCACAACAACATCTACCAAATCTCCAACTGATGAT GCTGTTGAAAATGAGGATGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTGGGAGA AGGTGCTAATACTTTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCACTGGCACACCAAGAATGTGCAGTTAAATGGT TTAGGATTAAAGGTAACAGAACATGTGATGTTTGCAAGCAAGAAGTTAAGAACCTACCCGTCACTCTTTTACGAGTTCAA ACTGTTCTAGGGAGCAGAGGTCAGCTAGCAGAGACTTCTCAATACAGGCAAGGGCAAATTATTCTTGTACTTGACTAG
Protein sequence (LotjaGi5g1v0077300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATEGANFSKDNNNQGAGTIEDKVDIQIQKDLVSPEITEELTSGQYETRPNIILEIPTITQEEAREDYLRIDIPPTPSPR RVIFPPCLSPGFSRANESPGPSSSKSRSTIKTFLPKLSFKFLNTSSDIEKAAFLALEGSAPKKPFLSRTLSRTKTTTSSL PATPIAHSHPGSLHGGNMAYLATTVEKGVQLPIHRSRSVPSFTEEGNTTPVGAKFRVIPTTPRIDEKIATTTSTKSPTDD AVENEDGGEDIPEEEAVCRICMVELGEGANTFKLECSCKGELSLAHQECAVKWFRIKGNRTCDVCKQEVKNLPVTLLRVQ TVLGSRGQLAETSQYRQGQIILVLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 3 | 330 | 328 | 3.7E-99 | – | |
| PANTHER | 3 | 330 | 328 | 3.7E-99 | – | |
| MobiDBLite | 88 | 107 | 20 | - | – | |
| MobiDBLite | 150 | 171 | 22 | - | – | |
| MobiDBLite | 150 | 165 | 16 | - | – | |
| MobiDBLite | 230 | 249 | 20 | - | – | |
| Gene3D | 242 | 315 | 74 | 1.3E-15 | ||
| ProSiteProfiles | 250 | 312 | 63 | 18.929 | ||
| SUPERFAMILY | 254 | 309 | 56 | 2.02E-13 | – | |
| SMART | 257 | 306 | 50 | 7.0E-18 | ||
| CDD | 258 | 306 | 49 | 3.69605E-15 | – | |
| Pfam | 258 | 305 | 48 | 3.5E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0077300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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