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LotjaGi5g1v0077300.3

Overview

Field Value
Gene ID LotjaGi5g1v0077300
Transcript ID LotjaGi5g1v0077300.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description RING/U-box superfamily protein; TAIR: AT3G09760.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7; TrEMBL-Plants: tr|A0A151U466|A0A151U466_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0077300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:12634791..12640767) extracted from Lotus japonicus Gifu genome v1.2.

TCATGCTTATTCCATAAGCTGTTTCCATGGTGTCTCTCTTCTCCACTACTTGCTATATACTGTCTTTGCTTCTCTCCAGC GAATTTCCAGCTCCCATGATCAAGGGAAGGTTTCATCTAATTTCTTTCCAAAAATTTAAAAAAGTGTCTCAGTTTCCAAT TTTCAGCTCAAACTTGTGCAGCTTTTCCTCTTTGGTTTGGTGGGTTCCCCATTGACTATGGCAACTGAAGGTGCAAACTT TTCCAAGGATAATAATAACCAAGGCGCTGGCACCATTGAAGATAAAGTTGATATCCAAATTCAGAAGGTGCTTCTAATGC TTCTATTCTTTATCATACTTTTGATTAACACACTTGAAGTTGAATATTTGTTTTCTTCATCTGAAGCTTGTGGGTATTCT TTGTATGCATTGACTTTACATGTTTTATAGGAAAGCCTGCCATATTGGCATCTTGAAATTTTAGCAGAGATAGTAATTGA TATCTTACTAAAGGTTGAGAATTCGGTTTTGCAAATTGCTCCAGAAATTAGGTAGATTTTAGAGGTTTAAATATCCCTGA AACTTTACCATAGCAATGTTGCCCTGCTTCATAATTTGTATCATGCTGAAATGTTTCAGGCTCTCTGAATTCTCTAACTC TTAGATTTCAAGTTCAATCTTTGTTAATTGGCAATTGGATAAATCTATTTGACATAAACTTTTGACTCCAAAATTTCCTA ATAAGTCATGACTCTTCAAATTTAGATACCTTGTCATTTGTTCTAAAAATACTCTAGAAAAATTGGGGGGAATTCTCACC AAACTGAGTTACTTGATAAGAATCAACAAAGCATGAAAAACTTAAAGTTTTTTTATTAGTGTTGTTGCTTGTGACTATGG AAGATGGGGCTCCATAACTAGATTCATGAAAGCTTCAACAATTTCAATGAATGCCATTTAATTGCCGACTTGAATGATTC TGCCTCTCCCAGCCTCTCTGTGATGTTATCCAAACAGTGACATCATCATAAATCACATGACGTTCTTTCTCATCTACTTT GTACATCTCCCTATGCAGTCAAAGACATCATTTTTGTAACCAGAAAATGATTTGTAGAAATCTGGATAGTACAGACATCC AACAAACACTGAGGATGAGGATGAGAAAGGAAGAGAAGAGAGTGAACTAATTGATGTGATATATGATAGAAGAGAGAGGT AGAGAAAAAAAAAAATAGTATCATTACAGTTTCTAACCACTACTCTCTGCAACAAGTTTTTATTTTCATTTTTTGTAGGT GGAGGTTATTAATGATGTATATATCTAGTGAAGATAACTTCAATTGATTGAACCGAATTTAAGCATCCTCCAACTCAATT TCTGAAATATTTGCTCACTATAAGATTTATTACTTTGTAGCTTAATGAATAAACTTCATTCTTATATAGTTGTGGTTTTT TTGTTCTTCATATATAGGATCTAGTGTCACCTGAAATAACTGAGGAACTCACAAGTGGACAATATGAGACAAGGCCTAAC ATTATATTGGAGATACCTACAATAACTCAAGAGGAAGCAAGAGAAGATTATTTGAGAATAGACATACCTCCAACTCCATC TCCAAGAAGAGTGATATTTCCCCCTTGTCTAAGTCCTGGTTTTTCCAGAGCCAATGAATCTCCTGGTCCTTCCTCATCGA AAAGTAGATCAACAATTAAAACCTTTCTTCCCAAACTCAGCTTTAAATTTCTCAACACAAGTTCAGATATTGAAAAAGCT GCATTCCTAGCACTTGAAGGTTCTGCACCAAAAAAACCTTTTCTTTCAAGGACATTATCTCGTACCAAAACTACCACGTC GTCCTTACCTGCAACACCAATTGCTCATTCACATCCAGGGTCTTTACATGGAGGCAACATGGCTTATCTAGCAACAACTG TTGTGAGTAACTGCAGTTTTTGCAATATGTGACATTGTAATTATCATAGTTGTTTTAACCTAGCCTTGTATTCTTGAAAC CAAGTTTTCTGATTTAACTGTATGCATTTATTGTCTATAAGACTGTAAACTGTTTTATTGGTCGCTGAAGAAACCAGGAT TGAGTAACATGGAAACAATATTTTCTATTTTAGATAGTCATTTTGTCCCTAAAACTTAGTCCCTAAAAGATGGAAATAGG CAAAGATAAAATGCAATCAATTTAGTCATTGAAAGATGAAAATCATGATTAATATAATCCTTGAAAGATGAAAAGTGACC ATCCATTTTAGTCCTCGAAGACTAAAATTAAATTTGGTTTCATCTTTCAGGAACTACTTTGCCTATTTCCTTAGTAAGGG ACGAAAGTGACGGACTTAAATTATATCCTCCATGAACTATAGTGACTATTCACTCTCTATTTTATTATGGGGTCCACATA CATCCATCTGATGATAATTGTGTAAAATATTAGCTTAAATCATAGAGCTCAATGAACTAAATGGTTTTCTTCAAGAGATC CATCTTTTTAATTCTGGCCAGTCAATGCTTTATCCCTTTCTTCAAGTTACTTTTAAGTCTGCATCACTTCAGCTTGATAA GGAAAATGCTTTTGTGCTTCTCAAAATCACCATTAGACATTTATCTATCTTCAGGATAATTTGTTATACACCTACATGAT TGTATCTGATATATACTTCTTCCCTCATTTTACAGGAGAAAGGAGTGCAATTACCAATTCATCGTTCCCGGTCAGTTCCT TCATTTACAGAAGAAGGTAATACCACACCTGTAGGCGCAAAGTTTCGTGTAATTCCGACCACGCCACGAATCGATGAGAA AATTGCCACAACAACATCTACCAAATCTCCAACTGATGATGCTGGTAAGAGCTATTTATCATATTTGTTTTATAAAAGAT TTGTCAACCTTAGAATCTTTAACAATATTTTACTTGTCCTCACTAAAATTATATGGATTTGACTCTTCTAAAATTGAAGA GAAATTGAAGAGTCACTTTAGAGGGCAAAGCAAGCAACCACAACCCTTAATTGAAAAACCAATGGTTAAAAGTTAAAGAA CATCAGTTTGTTATACATGAATAAGTGTATTACCGCTATCTCAACTGAGTCGATCAAGGGTTGTGATTGCACTTTACCCT CCAAAGCGAGTCCCTCACTTTAGAGGATTCAATCCAAGTCAAATATATTGTTCTCTCATTCATAGTGGAGTTGCAATATC TTCTCTGGTTTAATTTACATAAACTTATTTTTTAGGATTAAACTGACTTTGGTAATGCTGCTAATTTCCACATATATCAT TTATTTATTGGTTTAAACCTCTAGATTAATTCTTTCAATAACCAACAAGTGCATCTGAGTATTGTGGTCAGTTGAAAATG AGGATGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTGGGAGAAGGTGCTAATACT TTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAGGATTAAAGG TAACAGAACATGTGATGTTTGCAAGCAAGAAGTTAAGAACCTACCCGTCACTCTTTTACGAGTTCAAACTGTTCTAGGGA GCAGAGGTCAGCTAGCAGAGACTTCTCAATACAGGCAAGGGCAAATTATTCTTGTACTTGACTAGTTATTTTGGTTTTGG AAAACTTTCTAGACTTTCTAGCGATGATTTTATGGTTACGAACTTTAGGCCGTATTTCATTGACAACTTACAAGCTTCTG CATAAGCGTTATAAACTCATAATAAAAACTACTGATGATTTGTTATACTAATAGACTATACATCAGTTTAGTTTGGCATA TAAAGGACTTCAAGTTCAAGCTTTTCTGATCCCTTATGCTGACGAATTTGGATTCTGTGTAGTCAAAGAATTCCTAAATT CACAGTCAGAATCTGAGCTGTTGTATCAAAGATCGGACAGCTAAAATCTTAAGCTAATTTCTACCGACCGATCTTCATAA AATATATGAGCCGACCGATCTTGATCAAACAGTGCATATTTCTTGACTTCATGAATGTAGGATTTCTCTGACTGCTGGTA ACCCAAATCCTTGTTCTGATACAACATTACTGATACAAAACTTCTACAGGGTTTTGCAGGATGCCCCCATTCTTGTCATT GTCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTAAGTTCAGCTTCTCTTGTAGATAGCATTCCCTTTAG CCATATGAATTTCCAATTTTATCGATGGACAGGTTTCAAAGATGGGATCTAGTGCTATTGCTATGTCTCTCCCATTTTCT TGTATACTTGGTCTTCTTGCGAGCATGACCGCTACAACAATGGGTTAGGTTTTTTTCTACTTCTGTTCAATGTGTACTTG AATTCCTCCTATGGTATTATACAATTTACATTAATTCCTCCAAAATTTTCTTAGTGAGGAGAAAACATGTTTGGTTTTAT GCAACTGCTCAGTTTGGTCTGGTGGCTCTGGCTGCACATCTTTTCTATTCATTGGTAAGAGATTCTTTTTTGCAACCATA GTTATGGTACATTTTCTGTTTTTTGTATCTTTTCAGCCCCCTTCTCTATTTACTCGTCTTCCTGTGTGTTTGGTCCCATG CTTGAGAGTCTTATAATCAATTCTAATTGACCAGTATTACTTTTAGACAGTTATATAAATGCATGACAATCGACTTAGAA AATTGACTTTAGTCGCAAACTCAATTCTGAAGAGAGATTAGAGAGAGTAGTTACTGAGGTGAACTTTATTATTTGTGGGA TTTTATGATTGGATTTCGCAACATTACTCTATAGAAATAATTTTTCCCATAAGTGTATCCAAATAAAAATGACTTCACTT TTAACTCATTTTTACCAAAATCAATTCTGACAACGTTGATCCAAACACGAACTTCCTCATGAAAATGTACTTAAAAGTAG CTTGCTTGTGGTTTCAAATGTTGGTTTTCTCAATGAATCAGTAAACGATTGTTCGGAATTTGCATATCAAGATCTGTCTA ATATCAAACATTTTAATACATTAATTTGGAATGGCAGGCTCATATGCAGGCTGTTATAGCTATCCTACTAGCTACATTTT CTGGGTTTGGAGCTGTTATGTTTGGAGCTTCTGTTCTTATGGAGATTTTGAAGTGGAGGGAAAGATGGCTTGCTGCCCAG TTGAATCGACAGAGCGGTTTGCAAGAGGCTGTGGTACCGCCCGAGCAATCATCTGCAGCCACTCATCAAGCTCAGGCTGA TCCTCAACATACTGAAAGTAATAGAGGAGTCACCCCTGCCCAAATGAGCTAATAGAACACTTATTCAAGATTTTGCTTGA AAACTGTCCTCATAAACTTTTCTCTAGCTGTAGATATAAGTATATATTGTATATAGTCAAGTTTGAGCACATTGAGCATT TGTGAGTTGACATTAATCGTTTAACCCCTCGAACATGAGACCTATGCTTAAGTTAGACCTCATGCAGTCAATGGTGGAAA CAAAAACAAATTCACAATGTAGTCAAGTTTAACATCTGTAGATGGTAAGGAATCTTGTAGTGTGAAATTTCTTTGCAACG GATCTAGTCGAAGGCCTCCATGCATTTCCATAAAGTTGGGACAGAGTTAGACGCTTATAGTGGTTCTAAACATGGAAAAG AAGGGTTTCTCATCTAGACATCATCCTGCATTCTTATTCTAGATATCTAGTAACTAGTTCCTTCTCGATCTTAGCTAAAT GGTTGTCTCAGGCCATCCTACGAGACAAAAAAGATGTTGAAGTTAGAATCAAAAGTGGAGGCTTGGAAGCATCCTGATCT GAATGTGTTTTTTTCTTTTCCTGGTATGTGATGTTGAAGTTGATTAGAGTAAGCGAGCTTGAATTTTTTCGAGTATTTGC GGTGCTGAGATGTATTGCTCTTAGTTAAGGTTTGATTACCATTTGCTTTGTATGTAC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0077300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACTGAAGGTGCAAACTTTTCCAAGGATAATAATAACCAAGGCGCTGGCACCATTGAAGATAAAGTTGATATCCA AATTCAGAAGGATCTAGTGTCACCTGAAATAACTGAGGAACTCACAAGTGGACAATATGAGACAAGGCCTAACATTATAT TGGAGATACCTACAATAACTCAAGAGGAAGCAAGAGAAGATTATTTGAGAATAGACATACCTCCAACTCCATCTCCAAGA AGAGTGATATTTCCCCCTTGTCTAAGTCCTGGTTTTTCCAGAGCCAATGAATCTCCTGGTCCTTCCTCATCGAAAAGTAG ATCAACAATTAAAACCTTTCTTCCCAAACTCAGCTTTAAATTTCTCAACACAAGTTCAGATATTGAAAAAGCTGCATTCC TAGCACTTGAAGGTTCTGCACCAAAAAAACCTTTTCTTTCAAGGACATTATCTCGTACCAAAACTACCACGTCGTCCTTA CCTGCAACACCAATTGCTCATTCACATCCAGGGTCTTTACATGGAGGCAACATGGCTTATCTAGCAACAACTGTTGAGAA AGGAGTGCAATTACCAATTCATCGTTCCCGGTCAGTTCCTTCATTTACAGAAGAAGGTAATACCACACCTGTAGGCGCAA AGTTTCGTGTAATTCCGACCACGCCACGAATCGATGAGAAAATTGCCACAACAACATCTACCAAATCTCCAACTGATGAT GCTGTTGAAAATGAGGATGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTGGGAGA AGGTGCTAATACTTTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCACTGGCACACCAAGAATGTGCAGTTAAATGGT TTAGGATTAAAGGTAACAGAACATGTGATGTTTGCAAGCAAGAAGTTAAGAACCTACCCGTCACTCTTTTACGAGTTCAA ACTGTTCTAGGGAGCAGAGGTCAGCTAGCAGAGACTTCTCAATACAGGGTTTTGCAGGATGCCCCCATTCTTGTCATTGT CAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTAAGTTCAGCTTCTCTTGTAGATAGCATTCCCTTTAGCC ATATGAATTTCCAATTTTATCGATGGACAGGTTTCAAAGATGGGATCTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0077300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATEGANFSKDNNNQGAGTIEDKVDIQIQKDLVSPEITEELTSGQYETRPNIILEIPTITQEEAREDYLRIDIPPTPSPR RVIFPPCLSPGFSRANESPGPSSSKSRSTIKTFLPKLSFKFLNTSSDIEKAAFLALEGSAPKKPFLSRTLSRTKTTTSSL PATPIAHSHPGSLHGGNMAYLATTVEKGVQLPIHRSRSVPSFTEEGNTTPVGAKFRVIPTTPRIDEKIATTTSTKSPTDD AVENEDGGEDIPEEEAVCRICMVELGEGANTFKLECSCKGELSLAHQECAVKWFRIKGNRTCDVCKQEVKNLPVTLLRVQ TVLGSRGQLAETSQYRVLQDAPILVIVNMLAYFCFLEQLLVSSASLVDSIPFSHMNFQFYRWTGFKDGI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 - –
MobiDBLite
mobidb-lite
1 20 20 - –
PANTHER
PTHR46158
22 373 352 9.7E-117 –
PANTHER
PTHR46158:SF10
22 373 352 9.7E-117 –
MobiDBLite
mobidb-lite
88 107 20 - –
MobiDBLite
mobidb-lite
150 171 22 - –
MobiDBLite
mobidb-lite
150 165 16 - –
MobiDBLite
mobidb-lite
230 249 20 - –
Gene3D
G3DSA:3.30.40.10
242 315 74 1.5E-15
IPR013083
ProSiteProfiles
PS51292
250 312 63 18.929
IPR011016
SUPERFAMILY
SSF57850
254 309 56 2.42E-13 –
SMART
SM00744
257 306 50 7.0E-18
IPR011016
Pfam
PF12906
258 305 48 4.1E-11
IPR011016
CDD
cd16495
258 306 49 3.48217E-15 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0077300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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