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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0078900 |
| Transcript ID | LotjaGi5g1v0078900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyol transporter; TAIR: AT2G18480.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9ZNS0|PLT3_ARATH Probable polyol transporter 3; TrEMBL-Plants: tr|Q1XF08|Q1XF08_LOTJA Putative polyol transporter protein 3; Found in the gene: LotjaGi5g1v0078900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12869525..12874124) extracted from Lotus japonicus Gifu genome v1.2.
GCAGAATAGAATTTTCTCTTTTGCCAAATTACAAAGCTGTATAAGAGTCGTAGTTTTGATATTCTTAGATCACACTCTAG CAAAATTGAAAAATGTCGATGGAAGAAAAGAAAATAGAAAATGGAAGTGGTGATTTTGGGGATAGTCATAAGAGGCTCAA CATGTATGCTTGTGCCTCTGTGGTAGCTGCCTCCGTTATCTTTGCTCTATATGGATATGGTAACTAACTTTCTATTCTTG TTCCTGTTTCATATATACTTGCATCTTTTGTAACAGGAGTTGTCTAAATGACCCATGATAAAAATTGGGTTAAATCACCC ATATCTATATGTACCAATCATATTATAACATGTGTCCTTATATTATCCACCTCACTTAATTAAAATTTTTTATTTTACAT TTTTGTAATATTTATTTTATTAAATACTTTAATTGCAAAATAAACCTATTAATTTAGATAATAACATAAAACTCCTTTAA TTTTCTAAAAAAAAACATAAAATCCCTAATTCTTCTACGCTCTTCTATTGTTGAGTTCTGGCCAGCAACAACCTTGCAGT CATAGACGAGGTTGATGAGCATGGTGTTTTGACATCGGACTATATACTATAAGAGACAAAAAACCCTTTAATCATTATTC AATTTTTACGGATTAATGAAACCTTAATTTGGTGGAGATAAAACGAGAGCAGCCTGAGAAATATCAGAGGTGTGATATAA GAGCTATGGTAGCAGTCAAAGCATAAGTTAATACCAGCCTGAGAAATACCAGAATCTAGTGACATATATAAAGAGTGGGT GGGGGAATTCTCGCCTACGAGGTTGTTGCTCAGAGGAGAAGAGGTACTGAGAAGAAAGCATGACAGAAAATGGGAATTAG GGATTTTGTGTTTTTAGAAAAGGAGTCATATGTTATTATCGAAATTGATAAGTTTATTTTGCAATTACATTATTCAATAA AATAAATATTATAAAAATGTAAAATAAGAAAGTTTAATTAAGTGAGGTAGATAATATAAAGACACATGTTATAATATGAT TGATACATATAGATATGGGTGATTTAACCCAATTTTTATCATGGGTCATTTAGACAACCCTTTGTAATAAAAATGATTTG TGTAGACCAGCTTTTTTATACATGACCACCACAAATGTAAAGTTCTTTTATTTTGCAGTTTGTTGCGTTAAAATAATTGT TAAAATTTTCAATGCCACCTCTAGTGTAAAGAAAACTGATGTACACTAATCAATGTTGTTTCAGTAATCACAAATTCTAA TGATTGTATTTTCGAAATTATAGTGTATATATTGTTGTGTGAGTACTGAAATATAATCTTTTCATCATCTACATGAAATC AACTGGTAAGCAATTTCAATTTTTAGTATTTTTTTATTTTAATGAATTTATGATATAACAAAAGATAGTAATTTATGATT GAATGTCTTTGTAAAACTCAACTTGTAAAAGCATTTTATTTTTCTCTTTTTCCTACCAAATCACTTAACACTTCTGCCCC TTTGGGATGTAATTCAGGTTTTAGGATATTATTCGTCTTAGAGAAAAAGGAAGATCCACGGGTAGTGTAAAGTTTTTTTA CACTGCAATCAATCAGATAATAAGGATGTGTCACGTCAATTAATGAAATTAAATAAAAAACTTAATTTTCTCACATCCTT AAAATCTAATTGGTTAACGTGTAAACAAACTTTACATCATCAATACATAGAAATTAAACATTTTTTCTTATATCATTTAA ACTTTCATAATAACTAGATAAAATAAGCTAATAAGCAATATCATTCTTTAGTTATGGCAGTGATGACCGGAGTTCTATTA TTCATAAAAGAAGATCTTCAACTCAGTGACCTACAAGTGCAGTTCTCCGTGGGCCTGTTACACATGTCTGCACTCCCGGC ATGCATGACGGCCGGAAGAATCGCCGATTACATCGGCCGCCGCTACACCATCATTCTAACAGCCATCATCTTCTTGGTGG GTTCAGTTCTAATGGGCTATGGCCCATCCTACCCAATCTTAATGATTGGACTCAGCATTTCAGGGATAGGACTTGGTTTC TCACTGATTGTAGCACCAGTTTACTGTGCTGAGATTTCACCTCCTTCTCATAGAGGCTTCCTCACTTCATTCCTTGAAGT TTCCACAAATGCCGGGATCGCGCTTGGTTATGTCTCAAACTATTTCTTTGGAAAATTGTCAATAAGACTAGGATGGAGAC TAATGTTGGTTGTACATGCAGTTCCATCACTTGCATTGGTTGCTCTCATGTTGAATTGGGTAGAGTCACCAAGGTGGTTG GTCATGCAAGGACGTGTAGGTGAAGCTAGGAAAGTGCTTTTACTAGTGTCAAATACAAAGGAAGAAGCTGAGCAACGTTT GAAGGAAATAAAAGTAGCTGTTGGGATTGATGAAAAATGCACACAGGACATTGTTCAAGTTCCTAACAGAACTCGCAATG GTGGAGGAGCTTTCAGGGAAATGTTCTGCAAACCTACACCTCCTGTTCGTAGGATACTAATTGCGGCTGTTGGAGTTCAT GCGTTCCAGCAACTCAGTGGTGTCGGCGCGATCTTGTTATATTGTCCAAGAATCTTTGAGACAATAGGAGTCACTGATCA GAGCAAGATGTTGCTTGCTACAGTTGGAATGGGGCTCAGCAAACTTGTTTTTGCAGTCATGTCAGTTTTCTTGTTGGACA GAGTTGGGAGGAGGTTGTTGTTGTTGATAAGCTCAGGAGTTATGGCTGTGTCCCTTTTAGGATTGGGTAGTGTCTTGACC TTGGTGGAGAACTCTAATAGGGAAAATCTTGGTTGGGCACTAGGGTTTGCCATTGTTGCTACCTACACCTATGTGGCTTT TATGACTATTGGAAGTGGGCCTGTGACATGGGTTTATAGCTCTGAGATATTGCCCTTGAGGTTGAGAGCACAAGGTCTTT CTATCTGTGTGGCTGTGAACAGAATTATAGACATGACAATGGCTACTAGTTTCATTTCAATTTATAAAATGATGACCATG GGTGGAACTTTCTTTATGCTTGCTGGTATCAATGTTGTAGCTTGGAGTTTCTACTATTTCTTCTTGCCTGAAACTAAAGG AAGATCATTAGAAGACATGGAAACTATCTTTGGAAAACGTTTCAAGCCTAATTGCAACAATGGAGCCTAGTTTCAACATG TATAGCTGTGTTTTTCCAGCTTGGGTTCTCTCCAGCACAATCCTGTCCAGCCTCCCTCTAGAAAGTTTATGGCCATTGAT TCATATATTTTGATGGCGGATATTTGTGTATAAAAAATATCACTAAAAACTTTTAATGGCTGATTTACACTTACAGGAAC CTCGTGCGGCCGAAGAAGATCCACACTCTTGTGTTTTTCTTCAAATAAGTGCTTTTTTAATAAAAACTAAATTGAGACTC ACGTGTTTGGTAAGATTCTTTGAATGAATGTTAGTTTGTAAATATGTTATTTCATTTCTCATTTTGAAGATAGTGATTTT TATTTTATAAAGTTGCAATTAGGATGCATAAGCCACAATAGAATAAAAGTTTGCTTCGGTATTGTCGCGCTAGAAATACA CACGTAAAAGAGCAAGTGATTCCTATCGCGTAATATAGGAAGTAAGTCTCAGTTATCCTACCCAAGTGACTAAGTCGTAA GAAATAGTTTTAGAGGATGGATGATTGTTTAGGTTAAGTGAACCCTACAAATTAAACGTTGCTAGATGATATTTTTTCAC TTGATTTGTACCAAAAATGTGATTGTCATCTCAATAGTCAGTGATAAAAGTAATGTTGGTGAACAAGATCTCCTGTCCTG AGCTATGAGTTTTATCAGTCAACATTAACAATTTTAATTTATTTGATTTTCCATTCATAGAGGAGATGGTGCGCTTATAT TGCAGCTATTTGATATTCTAATGAATTGCAGCACTATGATTTTTTCCTAAACAAGAATCTTGGGAAAATGGTCCAACTTC TCTTTGTTTTAATCAGCTTCTTCAGCTCATTCCTGATGCTTGAACATTCCTTCTCTAGCTCTGAGACACGATCCCTCAAG TTTTCACCACCTTGTGCAGGGTCTATTTGACCACTGGGATTTTGTGTGTTCTCAAGATTGTCTGAAACAAACAACCAGCT AGAAATTGATGTTCGGAGGCGAAGCTGTTCGAAAAACAGGACCTGCACAATCACTCGGAGTGGTAATCTTTCATTTTGTG CTGCATGAGTGCTTGCTTCCAATGAGAGCTTTTGGCAGTTCAGGAGTCTGCAGAATTGCTCCCTCTCAGAATCTATGAGC CAAGGATGTGCCTGTAGTTGTCATAAATGTGTTAGAGTGATCAAATTGAGACAGACAAGTACAAAGGAAAGAAAGATTCA TATAATATGTGTTTGTATTCACATTCAAATTGGCTTAAGTCACATTTAGTTCAAAGGCACAAGAGACATGAATTGGCCAA AAGCACAATTTTACTTGAATGTGCACTGACATAAATACTAACACACCATTGTTAACAGTGGAATTGATTATACTGTGAGG TTTAGCCATAATAATGTGCAAATTTGAACTATTCTTTTCA
CDS sequence (LotjaGi5g1v0078900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATGGAAGAAAAGAAAATAGAAAATGGAAGTGGTGATTTTGGGGATAGTCATAAGAGGCTCAACATGTATGCTTG TGCCTCTGTGGTAGCTGCCTCCGTTATCTTTGCTCTATATGGATATGTTATGGCAGTGATGACCGGAGTTCTATTATTCA TAAAAGAAGATCTTCAACTCAGTGACCTACAAGTGCAGTTCTCCGTGGGCCTGTTACACATGTCTGCACTCCCGGCATGC ATGACGGCCGGAAGAATCGCCGATTACATCGGCCGCCGCTACACCATCATTCTAACAGCCATCATCTTCTTGGTGGGTTC AGTTCTAATGGGCTATGGCCCATCCTACCCAATCTTAATGATTGGACTCAGCATTTCAGGGATAGGACTTGGTTTCTCAC TGATTGTAGCACCAGTTTACTGTGCTGAGATTTCACCTCCTTCTCATAGAGGCTTCCTCACTTCATTCCTTGAAGTTTCC ACAAATGCCGGGATCGCGCTTGGTTATGTCTCAAACTATTTCTTTGGAAAATTGTCAATAAGACTAGGATGGAGACTAAT GTTGGTTGTACATGCAGTTCCATCACTTGCATTGGTTGCTCTCATGTTGAATTGGGTAGAGTCACCAAGGTGGTTGGTCA TGCAAGGACGTGTAGGTGAAGCTAGGAAAGTGCTTTTACTAGTGTCAAATACAAAGGAAGAAGCTGAGCAACGTTTGAAG GAAATAAAAGTAGCTGTTGGGATTGATGAAAAATGCACACAGGACATTGTTCAAGTTCCTAACAGAACTCGCAATGGTGG AGGAGCTTTCAGGGAAATGTTCTGCAAACCTACACCTCCTGTTCGTAGGATACTAATTGCGGCTGTTGGAGTTCATGCGT TCCAGCAACTCAGTGGTGTCGGCGCGATCTTGTTATATTGTCCAAGAATCTTTGAGACAATAGGAGTCACTGATCAGAGC AAGATGTTGCTTGCTACAGTTGGAATGGGGCTCAGCAAACTTGTTTTTGCAGTCATGTCAGTTTTCTTGTTGGACAGAGT TGGGAGGAGGTTGTTGTTGTTGATAAGCTCAGGAGTTATGGCTGTGTCCCTTTTAGGATTGGGTAGTGTCTTGACCTTGG TGGAGAACTCTAATAGGGAAAATCTTGGTTGGGCACTAGGGTTTGCCATTGTTGCTACCTACACCTATGTGGCTTTTATG ACTATTGGAAGTGGGCCTGTGACATGGGTTTATAGCTCTGAGATATTGCCCTTGAGGTTGAGAGCACAAGGTCTTTCTAT CTGTGTGGCTGTGAACAGAATTATAGACATGACAATGGCTACTAGTTTCATTTCAATTTATAAAATGATGACCATGGGTG GAACTTTCTTTATGCTTGCTGGTATCAATGTTGTAGCTTGGAGTTTCTACTATTTCTTCTTGCCTGAAACTAAAGGAAGA TCATTAGAAGACATGGAAACTATCTTTGGAAAACGTTTCAAGCCTAATTGCAACAATGGAGCCTAG
Protein sequence (LotjaGi5g1v0078900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMEEKKIENGSGDFGDSHKRLNMYACASVVAASVIFALYGYVMAVMTGVLLFIKEDLQLSDLQVQFSVGLLHMSALPAC MTAGRIADYIGRRYTIILTAIIFLVGSVLMGYGPSYPILMIGLSISGIGLGFSLIVAPVYCAEISPPSHRGFLTSFLEVS TNAGIALGYVSNYFFGKLSIRLGWRLMLVVHAVPSLALVALMLNWVESPRWLVMQGRVGEARKVLLLVSNTKEEAEQRLK EIKVAVGIDEKCTQDIVQVPNRTRNGGGAFREMFCKPTPPVRRILIAAVGVHAFQQLSGVGAILLYCPRIFETIGVTDQS KMLLATVGMGLSKLVFAVMSVFLLDRVGRRLLLLISSGVMAVSLLGLGSVLTLVENSNRENLGWALGFAIVATYTYVAFM TIGSGPVTWVYSSEILPLRLRAQGLSICVAVNRIIDMTMATSFISIYKMMTMGGTFFMLAGINVVAWSFYYFFLPETKGR SLEDMETIFGKRFKPNCNNGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 13 | 491 | 479 | 1.3E-211 | – | |
| PANTHER | 13 | 491 | 479 | 1.3E-211 | – | |
| Gene3D | 15 | 494 | 480 | 5.1E-114 | – | |
| SUPERFAMILY | 21 | 486 | 466 | 1.57E-62 | ||
| TIGRFAM | 23 | 484 | 462 | 4.1E-82 | ||
| Phobius | 25 | 54 | 30 | - | – | |
| TMHMM | 28 | 50 | 23 | - | – | |
| ProSiteProfiles | 29 | 478 | 450 | 44.492 | ||
| CDD | 33 | 485 | 453 | 2.08199E-149 | – | |
| Pfam | 35 | 489 | 455 | 3.2E-89 | ||
| Phobius | 55 | 65 | 11 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 66 | 87 | 22 | - | – | |
| ProSitePatterns | 83 | 100 | 18 | - | ||
| Phobius | 88 | 93 | 6 | - | – | |
| Phobius | 94 | 112 | 19 | - | – | |
| TMHMM | 94 | 113 | 20 | - | – | |
| Phobius | 113 | 117 | 5 | - | – | |
| Phobius | 118 | 140 | 23 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| PRINTS | 120 | 139 | 20 | 8.6E-14 | ||
| ProSitePatterns | 125 | 150 | 26 | - | ||
| Phobius | 141 | 151 | 11 | - | – | |
| Phobius | 152 | 170 | 19 | - | – | |
| TMHMM | 152 | 174 | 23 | - | – | |
| Phobius | 171 | 181 | 11 | - | – | |
| Phobius | 182 | 206 | 25 | - | – | |
| TMHMM | 184 | 206 | 23 | - | – | |
| Phobius | 207 | 283 | 77 | - | – | |
| Phobius | 284 | 311 | 28 | - | – | |
| TMHMM | 285 | 307 | 23 | - | – | |
| PRINTS | 295 | 305 | 11 | 8.6E-14 | ||
| Phobius | 312 | 322 | 11 | - | – | |
| TMHMM | 322 | 344 | 23 | - | – | |
| Phobius | 323 | 344 | 22 | - | – | |
| ProSitePatterns | 340 | 357 | 18 | - | ||
| Phobius | 345 | 350 | 6 | - | – | |
| TMHMM | 351 | 373 | 23 | - | – | |
| Phobius | 351 | 374 | 24 | - | – | |
| Phobius | 375 | 385 | 11 | - | – | |
| TMHMM | 383 | 405 | 23 | - | – | |
| Phobius | 386 | 412 | 27 | - | – | |
| PRINTS | 390 | 411 | 22 | 8.6E-14 | ||
| Phobius | 413 | 423 | 11 | - | – | |
| PRINTS | 413 | 425 | 13 | 8.6E-14 | ||
| Phobius | 424 | 447 | 24 | - | – | |
| TMHMM | 425 | 447 | 23 | - | – | |
| Phobius | 448 | 452 | 5 | - | – | |
| TMHMM | 452 | 474 | 23 | - | – | |
| Phobius | 453 | 473 | 21 | - | – | |
| Phobius | 474 | 501 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0078900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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