Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0081100 |
| Transcript ID | LotjaGi5g1v0081100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase sigma factor; TAIR: AT2G36990.1 RNApolymerase sigma-subunit F; Swiss-Prot: sp|Q9LD95|SIGF_ARATH RNA polymerase sigma factor sigF, chloroplastic; TrEMBL-Plants: tr|V7BHJ9|V7BHJ9_PHAVU RNA polymerase sigma factor; Found in the gene: LotjaGi5g1v0081100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:13181631..13187204) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAAATAAATAAATCAGAGGTCTGTAAGAAGCTACGTTGCTACGAAGTCTCTTCATTTTAGCTTTATCCATATCTATC TATCTCTGTATCTGTATCTATCTAAATTTGCACTGTATCATACATGGGAAACAAACTTTCACAGAATGAACACACTGCAA CGTTCTACTACTACTACCTTAGTTTAATGTAGTATACATGGTATCCTCCTACTTCAGCTATGGAATCTGCAAGGACCATT TTTTGTGCGTCTCCACCTTTTCCTCCAAGAACTCACCATTGGAACACTCTTCCTTCATCTTCTTACACTTCTGGTACTGT GAAGCCATGTTCTGCATTGCTTTATCTTATTTAATTTTACATTTTTATGTTTCTAGTGTTTGGTATTTGTTTGATTTCTT GCTTGAACTGAAGTTATTGTTAGTGTTGTCTTTCTAGCTCATGATAATTTTGAATTAAGGATTGTAGAGATACAATTGGT ATGTGTGGAAATGGAAATTCAGTAATGTAACAAGATACTTTGCTCATTTTCATTGTTATCCTTCTGTAGTTTCACTCGAT GTTATTGATATTCAGGGTTTTAAATTGCATTGTGGTTGCTGCTGCGTTGCGCAATTGCAGATAAATGGTGGTTGTTGTGA TTGCAATTGTAGCGGCTATTGCGGTTGCGGACCGCAATTTGAAACCATAGCTAGTTTTACTCCATACTTTCTGAAAATAG CCCCACTGTTGTATTCTTTCACATAGGAATAATGAATTTTACAACATCATCAACAACAAAAGCCTTATCTGCTAAGTTAG GTCGGCTATATGAATCACACTATGCCATTGAGCTCGATCAAAGACTAAAATTTCATAAGCTAATTAGTTTCATAGGCTTT TAAAATCCTTGTGCAGCTGGTTCAAGCACAGCCTTCCTTTATCTGTGTTGTCTTTGTCAGGGCTATTTTATGTTTTTGTT TTTTCTTCTTTCAACTCAGTTCAATTTTCTGGTGCCTTGAAGAATTCGATTTACCGATATGTGATTTTTCATAAACTCCT AATCTTAAAACAAATTTTCCTCTTTGGTTTAACTATTGTGTGACTGTGTATGTGGTTTGCCCTCACCAGTGTAGTCTGAG TTGAAACTATGTTATTTATTCCTTTGTTCATAAACCTGCAGTTTTGATGTTTCGCGAACAAGCTGCCCCTACTGTCTCCT CCCGGTCTACTAGTGTTTCAGCCCAAAAATTTCCCACCTCAGTGCTTTTACAAGAGCAGCGTGATGAGCAGAGGCCTCTT TTGCACGTTTCTAAGGAAGACAAGACATGCCAGGTTCAAATTTTATTGATATATGACTTCATCAAGCTTAGGCTTCTTTA AATCCATTTCATGAGATCCTTCATATTTTATTGTGCAAATTGCAGTGACCTCCCCTGAGGTTTATCGTTATTGCACTGAC CTCCCCTCTATTATTTAATTAGACACTAACCACCATTATTTTATTGGGGGCATTGCACTGATCTCACATGAGGTTTATCA TATTATTAAACTGACTTCCTCTAAGATTATCATTATAACACTCTACATCCCTCCATTAATCTAAATGGTGTATGAAGGAG GGAAAGTCAATGCATTTCGCAAAGTAAAGGGGAGGTCAGTGCAATAATGATAGACCTAAAGGGAGGTAAGTGCAATTTGC CCTATTTTTTTACTTTGTTGTCAAATCAACTAGAATTGATTGATGGTCCATTCTTGTTACAGTCTTGCTGTCAAACCTGT GTTATGGAAGCAACTTATGAGACCAGCTTTTAGTTATGTTTAAATGTAAAGTGCAATTTTTTCTTACATGGAATGTACAA ACGGGCTTCTTAAGTTCTAACTGCTAGGTTTTTTCTACTTAATCACTTAATGCCATAATAGGCACGCTATCAATTAATCT TCCCTTTGTTCAACAACAGGCAGTATTAAATGCAAGGCAGGTGGATATGTCCTTGGTTCATGAAGAGAATAACATTGGCA AAGTTGATCAGGTAGTAGATGATTTTCGGCAGCACTTGCATCTCTGGCCCCACTTACAGAACTTGTGAGACAACTGAAAT TTTCTTCTGAGTCAATTTGGTCAGATAGTGACTGTTAATTGGAAATCTTGGCCGTCCTGAGTTGTCTCCTGATAGGTGTA TAAATGGCTTGTTGCAGATTAACTTCCTCAGAAACCGGAGAAGTTGATGCTTCTTCAACTCTACAGCATGTTACTGTTGC AGAGAGGCCAGCTAATGATGTGCCGTGTAATGCAATTTCTCTTAGTAGGCAAGCTTTGTCTCCCTCAAAACATGAAGCCT CAGTAGCTGATGACTTGAAATCAATTAGCGCTGATGACGATGCTGATGATTCAATTCCTTTTAGGTTAGTTCTATCTTCT TCGCCAACTCTGACATTATTAATTTATTTTTCCTGTTTATAGGTTATTTTCTTTGTAGTGTAATGCCTAAACTAAAAACT TCTCTTCCATCTGACCTTTGCCAGTTTCGCTGACCCATCACGTCGAAGCAATAAAACTGTAAGGTCAACACGGCTTCTAG AGAGACAATCAAAACAAAGAAAAGTATCCAAGTCAAAAGTTAAAGACAATGATACTTACCTTGCAAGAAAGGATGATCCA CAGGAAAGGATACGTGTGAAAAGGAAAATAAATGAAGCATTTGATCAAAACGATCCCCAGCGCTTGTTCTTGCGGAGTCC TGGCAAAAAACTTTTGCCTATTGAAGAAGAGTCTCAGTTGATTGTTCAGATACAGGTATTATATTAGTTACTTTCAACTC CTTATTTCCTAAAATGAATGAGATGCTCTAATGTGGACAACGTAATAGGACTTACTGAAATTGGAAGAATTGAAGACCAG TCTTCAATCTCAATTTGGGAGAGAACCAACTATGGCTGAATGGGCTGAGGGTGCAGGACTTAAATGTCGAGCGCTGCAAA TGAAGCTTCGTTGTGGCAACAGAAGCAGAGAAAAGCTGATTAAAGCAAATTTGCGCATGGTACTCCATGTTGCTAAAACT TACCAGGGGCGTGGTCTCAGCCTTCAGGACTTATTACAGGTAGCCTTCGAGAAATAAATACCTCCCCCCCTAGCAAAGGC TGTTCTCATTTTTATTTCCTGGTTAGTTATGTTCTATATTGTTCCTCAACATAGAACCCGTAAATAAATGTTTGGCTTGA GTTGGAACATAAATTGGGGGAAAAGTGCCTTGCTTAAAGAGTTGTAATGATGCTCTTCACTTTTCTGTGTTGTGAATTAC AGTTACCAGATATATCTCTTACATTTTAATTTCTGTTGCTCTTGCAGGAGGGAAGTATGGGTCTTTTGAAGAGTGTTAAA AAGTTTAAGCCCCAAGTGGGTTGCCGATTTGGTAGTTATGCATATTGGTGGATAAAGCAAGCAATAAGGAAGGCCATATT TCATCATTCGAGGACAATCCGTTTGCCGGTAAATTTAGTGCTTGTTTGATTTCTTTCTCAATATTCTTAATTTAGAAACA CTTTTCAGTAACAATTTTCAAAACCTGTTTTTCAGAAGCAAAATAGCAAAAACAGTTTGAACGAGATGTTTTGCTAAACT AAAATCTTGTGACTTGAAAACTAAAAACAGACAAGTTTTAAAAACTGACAAATAACAAATGTTTTGAGAACAGTTTATAC CACACAAGTTTTCAAAACAGGCTCTTAGTTGTATAAATTTAAGCTTTACCACCATTTTGAGGTGTCAGTGCTCACGAATT GCATTAGTATATTTTGTAGCATCTTTGCTATTTGCAAATAGAGCATCAATTCTATTTCTGTAACACAACCTATGTATTAT CTCCAGGAAAAGGTATATACCCAGTTGGGCAAAATATTGGAGGCAAAGAAATTATACATTCAAGAGGGCAATCTTCGCCC AACCAAAGAAGATTTGGCAAGAAGGGTAGGAATTTCAGAAGACAAGATTTCCAGTTTGCTATATGTTGCCAGAATTCCAA TGTCTATGCAGCAAACTGTATGGACTGACCAAAATACAACTTTCCAGGTAGCTATTGTGATTTCCCCCTTTGATATGTTT CAATTTTTAGATCTATAAAGTGTAACAGGGAAAAGGAAAGTTTATTATGAATATTTAGAATATTTGGTGAGTATTTACAA AAGGCAAGCTTCCCGCTTAGTTTAATGAGGGTTTTTCTCAGAGTTTGGGTTAGACCTAACTTAACCATTTATAAAGAGAC TTATTTGACCATTATCTCTAGTCAATGTGAGTCTTCTTAACACCCCCCTTCATGCTCAAGCTAGACATCTGAAGCGTGAA GTTTGCAGCAGGACTGGACATCTGCGGGTGACCCATTTATGGGCGGCCCAATAAATAGATCTAGGTTAGACTATGATACC ATATTACAATTTGGGTTACGCCCTTTATAAAGATTTATTTGGCCATATCTCCAGTCAATGTGAGACTTCTTAACAGTTTT AATTGAGGGTTTTGCTTGTGCTGAAAATTGAAAAACATATTGGTGAAAGTTTAACAGCCACTGAAAGAATCTTGAGTTTT ACTTGGTTATTGCATGCTGTTATGTGTATGAAAGGAAACAAGTAGCCTAAAGTATGCTAGGGCCAGGAGAACCTGGTAAA TCAGAATCATATGATAAAGTTTTAGCATGAGATTAGCCTGAGAAGCATAGTTTACTACTTTTCTAGCATGCTTAAATATT TAATTAGTAGTAGCTAGATTAAAAGTCCCAGCCTCTCAGGCATGTGGGCTTTGTTTACTTGTGGAGACAATGAGACAACT GACATATAAAATAACTATCATTTTCTTATAATTGTAGGAGATTACTGCAGACACTTCAATCGAGTCCCCAGATAGTAGCG TTTCAAAAGAGCTTATGAGGCGGCATGTGCTCAATCTACTAAGCACGCTACGCCCGAAAGAAAGGAGGATAATCCGGCTA AGATTTGGTTTTGAGGATGGAGAACAAAAATCTTTATCAGAAGTTGGAGAGATATTTGGTTTGTCCAAGGAAAGGGTCCG TCAGTTGGAGAACCGCGCGTTCTACAAGCTCAAGAAGTGCCTTGCAAGCCAAGGACTTGATGCTTATGCAGACTTGCTTG TATAGATCAGTGAAAACAAGGTTATGCACATGGCTGAAAATCTAAGAGCTTTTTCTGCACACTTTTCTATAGGGAGTGCC TAAATCAAGCTTTTGAAGGCAAAGTTAACACTATACCACTGCAATTGAGTACAAATCAGAGGGCCTAATGGCTGGCGGAA AATGAATTGAAGTGTTAAAAAGTTGAGGCTTATACAAATGAGAACACTTGTAGGTGAGAATATTGATGATATTTATGACA CAAAATAAATTGTTTTTTTACCTTAAATCTATAGTATTTTTTGTACGTTTAATATGAATTTGTGTTCTCTTTAATTATAA AAATAAAACCCTATGATTACTCAAATGATTCCATCCTAGTACCTCTGTTCGCAGCTGATCTATGTTTTTTTGGTTGATCA AGTTATCAATTATTTATAGCAATAAAAAACGAGTTATAACTTTTTATATTTGAA
CDS sequence (LotjaGi5g1v0081100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTGCAAGGACCATTTTTTGTGCGTCTCCACCTTTTCCTCCAAGAACTCACCATTGGAACACTCTTCCTTCATC TTCTTACACTTCTGTTTTGATGTTTCGCGAACAAGCTGCCCCTACTGTCTCCTCCCGGTCTACTAGTGTTTCAGCCCAAA AATTTCCCACCTCAGTGCTTTTACAAGAGCAGCGTGATGAGCAGAGGCCTCTTTTGCACGTTTCTAAGGAAGACAAGACA TGCCAGGCAGTATTAAATGCAAGGCAGGTGGATATGTCCTTGGTTCATGAAGAGAATAACATTGGCAAAGTTGATCAGGT AGTAGATGATTTTCGGCAGCACTTGCATCTCTGGCCCCACTTACAGAACTTATTAACTTCCTCAGAAACCGGAGAAGTTG ATGCTTCTTCAACTCTACAGCATGTTACTGTTGCAGAGAGGCCAGCTAATGATGTGCCGTGTAATGCAATTTCTCTTAGT AGGCAAGCTTTGTCTCCCTCAAAACATGAAGCCTCAGTAGCTGATGACTTGAAATCAATTAGCGCTGATGACGATGCTGA TGATTCAATTCCTTTTAGTTTCGCTGACCCATCACGTCGAAGCAATAAAACTGTAAGGTCAACACGGCTTCTAGAGAGAC AATCAAAACAAAGAAAAGTATCCAAGTCAAAAGTTAAAGACAATGATACTTACCTTGCAAGAAAGGATGATCCACAGGAA AGGATACGTGTGAAAAGGAAAATAAATGAAGCATTTGATCAAAACGATCCCCAGCGCTTGTTCTTGCGGAGTCCTGGCAA AAAACTTTTGCCTATTGAAGAAGAGTCTCAGTTGATTGTTCAGATACAGGACTTACTGAAATTGGAAGAATTGAAGACCA GTCTTCAATCTCAATTTGGGAGAGAACCAACTATGGCTGAATGGGCTGAGGGTGCAGGACTTAAATGTCGAGCGCTGCAA ATGAAGCTTCGTTGTGGCAACAGAAGCAGAGAAAAGCTGATTAAAGCAAATTTGCGCATGGTACTCCATGTTGCTAAAAC TTACCAGGGGCGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGAAGTATGGGTCTTTTGAAGAGTGTTAAAAAGTTTA AGCCCCAAGTGGGTTGCCGATTTGGTAGTTATGCATATTGGTGGATAAAGCAAGCAATAAGGAAGGCCATATTTCATCAT TCGAGGACAATCCGTTTGCCGGAAAAGGTATATACCCAGTTGGGCAAAATATTGGAGGCAAAGAAATTATACATTCAAGA GGGCAATCTTCGCCCAACCAAAGAAGATTTGGCAAGAAGGGTAGGAATTTCAGAAGACAAGATTTCCAGTTTGCTATATG TTGCCAGAATTCCAATGTCTATGCAGCAAACTGTATGGACTGACCAAAATACAACTTTCCAGGAGATTACTGCAGACACT TCAATCGAGTCCCCAGATAGTAGCGTTTCAAAAGAGCTTATGAGGCGGCATGTGCTCAATCTACTAAGCACGCTACGCCC GAAAGAAAGGAGGATAATCCGGCTAAGATTTGGTTTTGAGGATGGAGAACAAAAATCTTTATCAGAAGTTGGAGAGATAT TTGGTTTGTCCAAGGAAAGGGTCCGTCAGTTGGAGAACCGCGCGTTCTACAAGCTCAAGAAGTGCCTTGCAAGCCAAGGA CTTGATGCTTATGCAGACTTGCTTGTATAG
Protein sequence (LotjaGi5g1v0081100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESARTIFCASPPFPPRTHHWNTLPSSSYTSVLMFREQAAPTVSSRSTSVSAQKFPTSVLLQEQRDEQRPLLHVSKEDKT CQAVLNARQVDMSLVHEENNIGKVDQVVDDFRQHLHLWPHLQNLLTSSETGEVDASSTLQHVTVAERPANDVPCNAISLS RQALSPSKHEASVADDLKSISADDDADDSIPFSFADPSRRSNKTVRSTRLLERQSKQRKVSKSKVKDNDTYLARKDDPQE RIRVKRKINEAFDQNDPQRLFLRSPGKKLLPIEEESQLIVQIQDLLKLEELKTSLQSQFGREPTMAEWAEGAGLKCRALQ MKLRCGNRSREKLIKANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQVGCRFGSYAYWWIKQAIRKAIFHH SRTIRLPEKVYTQLGKILEAKKLYIQEGNLRPTKEDLARRVGISEDKISSLLYVARIPMSMQQTVWTDQNTTFQEITADT SIESPDSSVSKELMRRHVLNLLSTLRPKERRIIRLRFGFEDGEQKSLSEVGEIFGLSKERVRQLENRAFYKLKKCLASQG LDAYADLLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 568 | 568 | 4.3E-274 | – | |
| PANTHER | 1 | 568 | 568 | 4.3E-274 | – | |
| Gene3D | 156 | 405 | 250 | 2.0E-34 | – | |
| MobiDBLite | 188 | 227 | 40 | - | – | |
| MobiDBLite | 202 | 227 | 26 | - | – | |
| SUPERFAMILY | 255 | 403 | 149 | 3.45E-39 | ||
| TIGRFAM | 329 | 556 | 228 | 1.8E-35 | ||
| Pfam | 333 | 402 | 70 | 3.0E-17 | ||
| PRINTS | 357 | 370 | 14 | 1.1E-21 | ||
| ProSitePatterns | 357 | 370 | 14 | - | ||
| PRINTS | 381 | 389 | 9 | 1.1E-21 | ||
| SUPERFAMILY | 406 | 479 | 74 | 1.74E-8 | ||
| Gene3D | 406 | 483 | 78 | 2.3E-10 | ||
| Pfam | 413 | 488 | 76 | 6.0E-15 | ||
| SUPERFAMILY | 466 | 564 | 99 | 7.1E-25 | ||
| Gene3D | 488 | 568 | 81 | 5.3E-23 | ||
| CDD | 495 | 553 | 59 | 1.22548E-11 | – | |
| Pfam | 501 | 554 | 54 | 3.0E-17 | ||
| PRINTS | 505 | 517 | 13 | 1.1E-21 | ||
| PRINTS | 526 | 541 | 16 | 1.1E-21 | ||
| ProSitePatterns | 526 | 552 | 27 | - | ||
| PRINTS | 541 | 552 | 12 | 1.1E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0081100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…