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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0081700 |
| Transcript ID | LotjaGi5g1v0081700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor TFIID subunit 8; TAIR: AT4G34340.1 TBP-associated factor 8; Swiss-Prot: sp|Q9SYZ9|TAF8_ARATH Transcription initiation factor TFIID subunit 8; TrEMBL-Plants: tr|K7LZR0|K7LZR0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0081700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:13363919..13368355) extracted from Lotus japonicus Gifu genome v1.2.
GCCTGTTCTTGTTGCTGAATTGCTGAATGACCCAAAACCAAAAACCAGTTCACAACTCTTTTATAAATAACACTCCCCCT CTCTCGCTTGAATGCTGAACCCATCTCGTTAATCTTCTTCCTTCCTTCTCCCCTTTCATTCAAATTTCCCTATTCAATTG CTTTCCTTCCACTCTCTGAGTTGCGATCTAGGGTTTTACCAAACAACTGAGAAATCCATGGCGGTGAACAAACAATGCCA CTCCACAAAACCCTAATTCCGGGTTCAAACATGAGCCATGGAGGCGACGGAGGAGAAAGAGCTGCCGCCGACGACTTCGG CCGCGCCGCGGCGAAGGTCGCAGTATCGCAGCTATGTGAATCCCAAGGGTTTCACGCCGTGAGAACCTCAGCTCTGGATT CCTTAGCCGACGTCGCAATCCGGTACCTCGTTGACCTGGGGAAGATCGCGGAGCTCTACGCAAACCTCTCCGGCAGATCG CATTGCTCCGTCTTTGATTTGATTCGAGGGTTTGAGGACCTGGAAGCGCCGCGAGGGTTTTCCGGTGGCGCCGGATTGAA GGAGATCGTGAATTATGTGGAAGCGGTGGATGAGGTTCCGTTTGCTCAGCCGATTCCTCAGTTTCCGGTGATTCGGGAGC GGAGGAGCATCCCGAGTTTTGACCAGATGGGTGAGACGCCGCCGGGAAAGCATATACCTGCTTGGTTGCCAGCTTTGCCG GATCCTCATACTTACATTCACACGCCGGTGTGGGATGAGAGGGTTTCTGATCCTCGTGAGGATAAGATTGAACAGGCGCG GCAGCGCCGGAAGGCGGAGAGGTCGTTGTTGAGCTTGCAGAAGCGGTTGTTGTTGTGTAATGGTTCGGCAGAAACCACCA CAACTACTAACACTGCTGCTGCTACTAATGCTACACCTACTGGTGTTGCTATGGATCCTGGAAGGGCTGATAAAGATGTT TCTCCGGTTAAGATTCCGGCGGTTTCGGATGGGAGCCGTGTTTCTGTGTTGGAGGCTTTTGCTCCTGCGATTGAGGTTCT AGGGAGTAGTAGTTTGTGTGATGATGATGGGGTTGAGGGGAGAATGGTGGTTCCTGCTGCGAGGCCGACTGTGCATTTTA AGTTCAGAACTGGGAAGAAGCTCATTGGGGAATCTTTGGATGCTAGACTTCAGAAGAAGGATGCTGCTTCGCGAGCGGCG TCGTTGGGTGGCAGAGAAGATGAGAGGGATGATAAGAAGAGGAGGGCTGAGTATATTCTCAGACAGTCTATAGAAAACCC ACAAGAACTGACTCTGTTGTAGATTCATTAGTGTTTACATTGGAGAGAGTTGGCATTATCCGCAGGGCTGAGGGGTTACT CAATACTCACTAGTTAAGGGCATGCTGATCTTCTGGTGAGGATTCTGCGACTTACCTGTAGAATCACTCTTGAGTTTTTA AGTTTTGTTTAGATCAGTTAGATTGGTTTCCTTTCTTGTCAGTTTAGCTCTAATTTACTTACAGATTTTTCAATGTAAAG CTCTTCTCCACATCCCATGTTGTATTTTACTTACTGAATTCAACTGAATCGGCGTACTCAATTTTGTGTGCATGTGCCAC AATCTTCTTGTTATTCTAGTTCTACCATTGCTTATGTTGACTTACAAGAAATTTGCATAGTCAGGTTAGAATTGAAGTGC ATATTAGGACATGGGAAGTTTATTAGTGGGGGAAAAGCATTCTGCAGCTTATTTTAGTGGCAATTCATTCAAATGTGATT TTTATTCATTCTCACTTCTATCTTTTCTAAGAAATACTGTTTTGTATCCATTGCACATTTCTCCCTATTCATATGACAAG ATAGATCTTGATGCCTTTTCCCATAACTAACCCATCTACTAAGTAATAACAACATTATGGCCATTGTATTTCAAAATATA AAACCACTGGCAAGAGTAAATATTGTGTCTTTCTGGAATGATTGGTGAATAAGTAATTTATCAATGTTTGTCTTCTAACC AATCATAGTCCCGACCTCCAAGCAGAATGTGTTTATCATCGTTGGCCTAGACAGTTAGATAGATGAATGCTTAGCCATGG ATATATATCCCCTTAAACTCAAGTCATTCCTAGTGTTTTACCCAGTTTCAGTTAATGGTGGAAATACAATTCAATACTAA AATCTAGTCTGCCCAATTTGATGGATGTAGTGAATTTGAACCTCTGACCTAATATCTCACTAGTGTTATTCACAAGCTCA CTTGCCTGTATACACACCCCCTAAATGGTTCTATAGAGTGGAAGCATGGACACCTAGTTGAAATAGGTCTCACTCCTAGT CCTAGCTCGTGCTAATTTACCACTTAAGTTTTGGAACCATGCGTTTACTTCAGCTGTTTATCTTTACTAATAGGATGCCA ACTTCCATCTTCAACTCTATGTCATCATACTCTGTCTTTTGAATCAAATACCTGACTACAAGTCCCGTAAGGTCTCTTGG GTACGCTTGCTATCCATTTATTTGATCTTACATTCCTAACAAACTCTCTCTTGGCTCCAAAGAGTGCATATTCCTCGGTT ACTCTTTGTCTGGCCTCCATCTAACCCTTCTCCTTCTTATGCCTCTCTCCTCTCCACGACCTTTTGCATCTTTCCTCCCA TACTAGCCTCGTGGTATGTCTACCTGCTTCAGTACCTTCTTCCAGCAATATTTGCCCCATGCAAACTCGTGCCAGAGCTA GCATATTCAGACCACAGCTGTGCCCTGCTCTATTACTTAATCACTTGGAACCAACTATTGTACAGCCCTGATTGACCCCC TGAATAGCATGCAGCCAAATAATATTTGGTCATTGGTACCTTTTGCCTCCAAATCATCATGCCATCCTAAACGGCATACA GCCAAATATTTTTTGGTCATTGGTCAGTTTGCCTCCAAATCGTCATGCATTTGGCAGCAAATGGGTTTTCCAGATTAAAT AGAATCTATATATGGCAGATAAACAAGTATATTACCCACCTAATACGGTAATACCTAAAGGGTTTCACCAACAATATGGT TGGATTTAGCAGAAACTTTTTCTCCAGTTATGAAGTCAGTCACTGTTCACTACTGTTGACCCTGGCTGTTTCCTATCACT GGGACTTCCAACAGATTCATGTAAATAATGTTTATCTAAATGAAGAGGTGTACATGGAGTGAACTCGAGGCTTTAAGTCC TCTGGCAGGTCTTTGGTTTGTAAACATAACAAAGCTCTTTATAGCCATAAGCAGGGACTGAGAGCATGGTTCAAATGGCT TACTTTCAGTCTTCTCAGTTTTGGCTTTAAGGCCAGCTGATTTGATTCATCTTTGCTCATGCTACATGGCAGCAAGCTCT GTCTTTTTGTACTCATCTATTTTGATGACATTATTGTCAACTAGGAGCTCTGCCTATGCAATCTGACAGCTCATTTTTCA CCTGGATACTGTATTTATTTTCCACTCTAAAAACTTGGCTCACTTGAATTTTTTTTGGGTATTGAATTTGAAGCTCAGCG CATCAAGGAATGTTCACTATTGCCACCATGTGACCACGGTCTAAGTATATTCAGGACGTCTTGACCAAAGCTCATATGTC TGAAGCAAAGGGGTTTTCTACCCCCCATGGTTGGCAATAGTAAGCTGTCTATGGACTAAACAATGTTAAAGACCCCTACA CTGCATCGCTCCATTGTTGAAGCTCTACAATATGTGAGAAAGTCTTATGCCAGATCCAGCATAGAAGCTGAACACAGAAG CATGGTACAACTTACAAGCTGCAGCTGACCTTCTGTAGGTTCAGTTGCTTCTCATTAAATGCGGGTTCAATTTCAGGCCC CTGCTGTTCATGGTGATAACCTCAATGCAGTCTAACTCTCTCCCTGGAAGTTTAGGCCTCTTTCCTACGAGATACTTCCA TTTTTCCCCTTCTTGCTTCTACACATAATTATACAGGGACCTGGAATCATTTGATTCAGGCCCATTCTTTGTAAAAACCT ATCATTCACGGTTTTGACTATCTCTTTTGTGGAACCTATCAATTTATCATGCAGCTTTACTGTTAGGAACCTTAATCCTA ACAATTGAGAACTGTAAAGAAAGTGTAAGAACTGAATTGATAGATTGCTTATTTGATGATAAAAAGGGATTACAACAGAA AGGGAATGAAATCCGATTCTGACACAGAGCTAGGCTCCTATAGGAAGCTCAAAGCTTCCTACTCATATCTCTACTTAGCT TAGAATCAAGATACCCTCTCAACCTTTCCTTCCTCCCTCTATATTGTTAGATGGTCATTACAATCATAATCCTCTCTCTC TATTATGTTAGGGAGTTACTAAGTATTCCCCTTTCTACCCCTTCTAGAATACCCTCCAAACCTTAGGCCCATTCATCCTA TGATGCACCAATATGTCACCCTCCAAGCCCATCCCCG
CDS sequence (LotjaGi5g1v0081700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACTCCACAAAACCCTAATTCCGGGTTCAAACATGAGCCATGGAGGCGACGGAGGAGAAAGAGCTGCCGCCGACGA CTTCGGCCGCGCCGCGGCGAAGGTCGCAGTATCGCAGCTATGTGAATCCCAAGGGTTTCACGCCGTGAGAACCTCAGCTC TGGATTCCTTAGCCGACGTCGCAATCCGGTACCTCGTTGACCTGGGGAAGATCGCGGAGCTCTACGCAAACCTCTCCGGC AGATCGCATTGCTCCGTCTTTGATTTGATTCGAGGGTTTGAGGACCTGGAAGCGCCGCGAGGGTTTTCCGGTGGCGCCGG ATTGAAGGAGATCGTGAATTATGTGGAAGCGGTGGATGAGGTTCCGTTTGCTCAGCCGATTCCTCAGTTTCCGGTGATTC GGGAGCGGAGGAGCATCCCGAGTTTTGACCAGATGGGTGAGACGCCGCCGGGAAAGCATATACCTGCTTGGTTGCCAGCT TTGCCGGATCCTCATACTTACATTCACACGCCGGTGTGGGATGAGAGGGTTTCTGATCCTCGTGAGGATAAGATTGAACA GGCGCGGCAGCGCCGGAAGGCGGAGAGGTCGTTGTTGAGCTTGCAGAAGCGGTTGTTGTTGTGTAATGGTTCGGCAGAAA CCACCACAACTACTAACACTGCTGCTGCTACTAATGCTACACCTACTGGTGTTGCTATGGATCCTGGAAGGGCTGATAAA GATGTTTCTCCGGTTAAGATTCCGGCGGTTTCGGATGGGAGCCGTGTTTCTGTGTTGGAGGCTTTTGCTCCTGCGATTGA GGTTCTAGGGAGTAGTAGTTTGTGTGATGATGATGGGGTTGAGGGGAGAATGGTGGTTCCTGCTGCGAGGCCGACTGTGC ATTTTAAGTTCAGAACTGGGAAGAAGCTCATTGGGGAATCTTTGGATGCTAGACTTCAGAAGAAGGATGCTGCTTCGCGA GCGGCGTCGTTGGGTGGCAGAGAAGATGAGAGGGATGATAAGAAGAGGAGGGCTGAGTATATTCTCAGACAGTCTATAGA AAACCCACAAGAACTGACTCTGTTGTAG
Protein sequence (LotjaGi5g1v0081700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLHKTLIPGSNMSHGGDGGERAAADDFGRAAAKVAVSQLCESQGFHAVRTSALDSLADVAIRYLVDLGKIAELYANLSG RSHCSVFDLIRGFEDLEAPRGFSGGAGLKEIVNYVEAVDEVPFAQPIPQFPVIRERRSIPSFDQMGETPPGKHIPAWLPA LPDPHTYIHTPVWDERVSDPREDKIEQARQRRKAERSLLSLQKRLLLCNGSAETTTTTNTAAATNATPTGVAMDPGRADK DVSPVKIPAVSDGSRVSVLEAFAPAIEVLGSSSLCDDDGVEGRMVVPAARPTVHFKFRTGKKLIGESLDARLQKKDAASR AASLGGREDERDDKKRRAEYILRQSIENPQELTLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 19 | 355 | 337 | 1.0E-150 | – | |
| PANTHER | 19 | 355 | 337 | 1.0E-150 | ||
| Gene3D | 23 | 119 | 97 | 3.3E-18 | ||
| SMART | 26 | 102 | 77 | 1.3E-19 | ||
| Pfam | 29 | 96 | 68 | 1.0E-15 | ||
| CDD | 153 | 197 | 45 | 2.25827E-19 | ||
| Pfam | 153 | 201 | 49 | 1.4E-20 | ||
| MobiDBLite | 316 | 335 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIID complex | A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters. | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi5g1v0081700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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