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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0082400 |
| Transcript ID | LotjaGi5g1v0082400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal L18-like protein; TAIR: AT3G45020.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q2RQX6|RL18_RHORT 50S ribosomal protein L18; TrEMBL-Plants: tr|A0A072VK45|A0A072VK45_MEDTR 50S ribosomal L18-like protein; Found in the gene: LotjaGi5g1v0082400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:13701823..13705466) extracted from Lotus japonicus Gifu genome v1.2.
TAGAAACCAACAATTTAACCATTCACAACTACACATTTGTTTTTGTTAGAGATGTATGAAATAAATTGAAGGGGTTGTCA AACGTCATTTACAACCATATGACAATAAATCTCTATGGTACAACTACAATGCATAAATACATGAGAAAATGGAAAAATAT GGACAATCAAGCTAACATAACGGGCATGCAAGAACTACACTACATGCTCTTTCTTTTTTGTTGGGACTGGTAGAAGTGTT GGACCTGGTCCAAGAGAGGCCCAATAATGGTTGGGTATTTCTTTCTAGGCCCATTTGCGGGACGAGAGGATGGCGAGGAG GTTAGTTTTGCGGGTGTTTCTGGGGGCGAAGCACATGACGGCGAATGTGGTGGACTGGAACGGCGGAGGGAGGGTGGTGG CGAGTGCGTCGACGGTGGAGCAGGCGATAGCAAACGCGTTCGATTGGGGGAGGAGCTTCAACGTGAAGGCAGCAGCATCG GTCGGAGAGGTGCTGGCAATGCGGCTGAAGACGGAGGAGCCGGAGATAGGGATGGGAGGTAGAGTCGAGTTTGACGTCGA GAAGGAGATCGAGAAGAAGGGCCATGACAGTGGACACAAGGTGTGGGCGGTGGTTAATGCTTTGAAGAACAGAGGCGTCA AGGTTGTCATCTCCAACGAATCATCATAGTGTAGGTTAGTGAATTGCTTTTGTATTCTGTGAGTTGTTGTTTCTTCTCAA CATGTAATGTGCTTGTACTTGGTGACAGCATGCTAGAATGAGTAGTTTGAGTTGTTTGGTTGGATTAGAAAACAGAAACT ATAAACAGATTTTAGCCAACCAATCATAGCTTAACTGTACCTACCTCCCAAGCATGATCAAGTTAGTGAATAAACTGTTG TGGAATATGTTGAAAAACATTAAGACATGAAACTTGATCTGTTGCCTATTTCCTAATCACAGTAAGCAATTCTAAACCAT ACTACAATCAATGTCATGATTTCTGGATAGAGGGCATCACCATGTACTGGTGAGGAAATATAGTAATAGAACCCTTTTTC TAAGCTTTCTTATAATCTCCAATAATCCCAACAAAACCCATGACAGTAAGCTTTGGATTAAAACTACCATCAACATTTTG TTCCTTTGATGTGAAAGTCTTTTCATCCAATCCAACTATTTCGTTGCTTTGAAGAAACGTTGCCTCAAAAAAATATGTTT TTTTTCATTGGAATGTGAGCTAAGGTGGGTTAAAAGCGTATCCCAACAACCAACAAGGTCTAGCATAGATAGTAGATAGT TGAGATCCTTAAGAATCTAGTTCAGGTTCGAATCTTGGGCAATGCGTATGGAAAATGATTTATTGGGAGAGGTTTACCCA CTTAACATGATCTCAGAGCCTTGGGGGATGTAGGGCTTTCTCACTTATAATTCTCTAAATAAGGAGCAGCGTCCTTAATA CCATCACCAAGTAACTCCATGTAATCATCAAATTCATTCCCAACCCACTTCCAAGTTGTAATATCCCATAGAGCTTCGCC AAAGATCCCAAAGAACTATTATAAATAACACACAGTGGAGGCTTGAAATCTAGGACAACACCCAATCCTTAACATCAACT ACTAGAAACTGATTCCAACATAAAGCACCAATCCTCATCCAAATCTCTCTTGAATGGGGACAATCTCTCAGGCAATGAAG AATATCTTCTAGAGAGTTTGAAGTTTGAACAAGGTGGGCAGGCAATGAAGAATATCTTCTAGAGAGTTTGAAGTTTGAAC AAGGCGGGATTAGCAACCAAATTGCATGTTAACCTCCACTGGTTAACAAGAAGCACCTCATGTAAGATGATACATACAAA GACACATATTTTTTAGGAACCTTTAACTTCCAAACTCGATGCCAAGGCAAACCAGAAATCTGATCTAATTCCCTTTGCAT AAGCCATTCATAAGCTTTTTTACTAGAATAAAATCCATTCCTCCACACCACACCCCCAGATCCTCTTTAGAATCATCCAA AGTTGGAGGACATTGCAGAACATGTTCAAGAAAATAACTTGGAACAGAAGTACACTTATAATCCAAGAACCAATTCCCTT CACGGATTCAATCACACATTCTGAGATTCATGGCATTGACATGAACAAAAGGAACAAAATGTGAGAATAGATATGCTCCT AACTTGGCATAAGTTTTGGTTAGGACAACAACACCTACAAATAGAAGAAAAATGAATGATCATTAAGCTATGAAAATCTT GTAGATTTATTGCTTTATTTTAAATGCTTTCATAGTTTAGTCTTCATTTTGTTGGGTGAATATGCATGAGATCTTATTTG GTTTTGCTCTCATATAAATGTGTTTAAAAGAACTCATGAAAATTGATAAATTATATTTTTCATTATTAAAAGACTTGGAA CAATTTGGAAAATGTTTTGAAAGGTTATATATGTGTTTTGAAAATTTGGATAGCAACTTTCAGTAACACATTACCCGTTT TAATCTGAGGTTACCAGTGTTGTTACTGGAGAGAGAAAACACATACTACTAATCGATTACCATTAGTGGTAACTGATTAC CACTTTAGCAGAGTTTTTTTTTACCACTTTAGCAGAGTTGCTAAAACGTGAATTTTTCATCTGTTATGAACTCGAATTCC GTTTAGTTCATTCATCTCTCACTTATACACTTTTCTTTGTTTTCTAATGGTCTTTTATCACCTATAAATAGTTTTCAAAA CACTTTTTTACTAGGAGCTGTTGAGTTAGATGAAATCCTTTGAAGTAACAAGATGTTATGCCTAAAAGCTTCAAATTTTA GTCTCTAATTGATTTTTTTCCAGGGAGTTTGCGTTGAGAATGTGCTGGACTCAGTTGGTTGCGTCCCTTCAAAAGATCCA AACAGAACGTTTGTATTTGCAAAGATGGTAAAATCTTGGAATTTTAAATGTCCAAATAGATACATCCAAAATTTCTGTTC AAAAATAAACTTTGTTCAAAACTTCAAATGAAGTCAAAATCATAGCTCAGGCCAGGACCACGCTTTGTTTGAACAGAAAC CGACTTGCCTTAGCCTTCTACAAGACCGAGCTCGTGTCTGCTGCCACAAAAAACAGCCTCTCTGACCTCACCCCACGCAC CAACATGTCCAGAGATTCACCATCATGATAGCAGCAGAAGTCCTCTAATTTTGTTGAGAAGCTCGCAGATTCAGATGAGG TTGAAGGTATGAAAAACGGTAGAAAGGGGGGTTTGAATAACATTTTCAGAATAAAACTTCCACCTTAAGATTTTGACAAA TCTTTCGAGAACAAACAAGGTGCTTAAGATAAGAGAATAGAAAAGCACACAAGGATTTTATCCTTGTTCACTTGATGAAT CACTCAAGCTAGTCCAGTCCACCCGTTAAGGTGATTTCTTCCATCTTAGAATGAAGGCAATCCACTAATCAGGTAAATGT TACAACTGCACTTGAAACCTACAAGTGACTAACAATACACTGAATTAGCTCTCACTAAGATTCACTCTCTTAGTCTTCTC TAGGATCCGATCGACCTTGATCTCCTAAAGGTAAACTAAACAACTGTTTAGGAAAGATTGTTTACAAAGAGATTGCTTCC AAAAAGCTGTAGTAAACACAATGAATTCGAAGATGAAAGAATGC
CDS sequence (LotjaGi5g1v0082400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGGAGGTTAGTTTTGCGGGTGTTTCTGGGGGCGAAGCACATGACGGCGAATGTGGTGGACTGGAACGGCGGAGG GAGGGTGGTGGCGAGTGCGTCGACGGTGGAGCAGGCGATAGCAAACGCGTTCGATTGGGGGAGGAGCTTCAACGTGAAGG CAGCAGCATCGGTCGGAGAGGTGCTGGCAATGCGGCTGAAGACGGAGGAGCCGGAGATAGGGATGGGAGGTAGAGTCGAG TTTGACGTCGAGAAGGAGATCGAGAAGAAGGGCCATGACAGTGGACACAAGGTGTGGGCGGTGGTTAATGCTTTGAAGAA CAGAGGCGTCAAGGTTGTCATCTCCAACGAATCATCATAG
Protein sequence (LotjaGi5g1v0082400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARRLVLRVFLGAKHMTANVVDWNGGGRVVASASTVEQAIANAFDWGRSFNVKAAASVGEVLAMRLKTEEPEIGMGGRVE FDVEKEIEKKGHDSGHKVWAVVNALKNRGVKVVISNESS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 112 | 112 | 1.2E-14 | – | |
| SignalP_GRAM_POSITIVE | 1 | 10 | 10 | - | – | |
| PANTHER | 1 | 117 | 117 | 4.0E-50 | – | |
| PANTHER | 1 | 117 | 117 | 4.0E-50 | ||
| CDD | 2 | 110 | 109 | 3.60598E-11 | – | |
| Pfam | 2 | 69 | 68 | 8.2E-7 | ||
| SUPERFAMILY | 3 | 109 | 107 | 2.88E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi5g1v0082400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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