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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0085700 |
Transcript ID | LotjaGi5g1v0085700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|O31428|SKFF_BACSU Putative bacteriocin-SkfA transport system permease protein SkfF; TrEMBL-Plants: tr|A0A151R977|A0A151R977_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0085700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:14777454..14784987) extracted from Lotus japonicus Gifu genome v1.2.
AAACAATGATAATGGGAAAAAAGAACTAATTGTAACTTGACATAAGAAAAGTATATCGCATTCTGTTGTTGATTGCGGAC TATGCTTGCAAGAGGTAGAATTCTGTAACCATTTTTTTTCATCTGCCATATCAGTTGGCGGGTCTGGCAAAAAATTATTA ACTGGATTGGAATTGTTTCTATTATGCCTGCGGATCCTGTAACCCACTTTTTCCAGTTCCGTGCGTCTTTGGGAGGAGAT GCTAAATCTGTGAAAGCGTTATCTGTTAATTGGGTAGCTTGCCTTAGCGTCATCTGGTACTCTCGGAACAATGCTATTTT CAAGAATGAGGAAGTGAATGCTGAATGGATTTTTGAGCTAATTCAATTCCGCTCCTGGTTTTGGCTAAAGGCAAAGGAGA AGAATTTTTTAGCTTCTAATTTTGAGTGGGTTTCAAATCCTACCCACTGCTTTAAATCCTTGATCTGATCTGGTGTGGAT GAAGGGTTGTTGTTGGGTGTGTTGGTTACTGATTTCTTTCTCATCTGTAGGGGACGGTTTTTCTAGATTTTTGAGGGGTT GGTACATTAGTTTGTTATATCTGATAATTTTTCAAAGTCCATGTTGTAGCTTCTTTTATCTATAATCTTGTTACTTTCTA TCTTGTATTTGGGTAAGCACCCATTGTGCTTTATTTGAATACAATTGACTTATCAAAAAAAAAAAATATATCGCATTTGC TAAGTTGGACATAAGTATATAAAATTCTAATTCTTTCGCATTAACAAAATGATCAAGTAATTAAAATTTTCTCCAACAGC AACAGTTGCTCATTTCATTCTTTTCACCTTTTTAGTTCTAACTCAATTTGTTATCAGGCGACATCTTTTCTTGTGTCCTA AAAAAAATTCAAATGACTATAACTCAAAAGTTGCATTTCTCTACAACAACTCAAGCGAAGTATAAGATAAACGAAATAAG AAAGTGAATTTGAGAAAACGACTACCTCTAGTGGTTGAGCTAGTGATGCATGTAGTTGGTGAGATTGCATGCATAACCCT TATTGTTGACATTTCTACTACAAAACATACCGAAGAAAGTGAACAAGCAGGGACAAAGGTTCGGATTTGTTAGATATCTT GAAGTGCAGGAGCCAAGGAGATTGGAACAGCAACTGGTTAGTGTTATTGGGGGTAGCTTGAATATGCAAATTAACCTACC AAGGTTTGTGAGGAATACAGGGGAAGCAAAAGCAATTGAGTACTAGAAGGGAAAATCTGGAGTCATTGCAAAGGAAAGGA CGGTGGAGAGGAAATCATTGTCCGATGCAGAAGCTGTCAAACAAGGGGAGCGGGGGCACCCAACAATAAATACTAATAAC CGGGACGACACAGTGGGAAAGAAGCGACATGGAACGGTGAGGAGGAGGTGGATACCGAGGAAGAGCGACGATGAGGAAGA GTGGAAATGGCCAGTGCTTCAGTTTCAGAGCAACAATTTGGAATGGTTGAGGAATAGCTGTGTTGGGAGCCTCTATGATC CATTAAAATTGGAAACGCTCCATGAAACGTTTCAGCTATTGGGGTATAACTCAATTAAAATCAGACACCTAGCTAGGGGA TAACCTGGTTTTATTATCAGATGTGGATGGGGGTAATGTGCAAGAACTATTGTCAGGGGCAGAGGACTGGCTGGAGACCA TTTTTGAATATGTAAGTTTGTGGTCACCGGCTTTAACTCCGGCGGGTAGACTTGTATGGCTGAGGTGTAGTGGGGTTCCC CTAGATGTTTGGCATGATGATTTCTTCGAGCAGCTTGTGGGGGGGATCGGTTAGTTTATGTGCATGGACATAAACACAAG TTGCTACTCAAGGATTGATTTTGCACGCATACTAGTGAGAACTCAGATGCAGGAACCAATAGCAGTAATCAAAAGGGTCA AAATCAATGATTTGGCGTTAACTGTCAGGCTCATTGAGGAACTTGGGGGGGAAGTACTGAAGCGATGCAACTGTGTTCAG AGAGAAAATGATGGGGGGATGAACTCAACTTCTTCTGAATCGGAAAGCAGTTTTGGTGGACTAGAAGGAGAGGATGACTG GGAGTGTAACTCGATGGTACCAGGAAGCGTGGGATTTGAATCGGTATGGGAAAAGGAAAATTATGGTGTTGTCTCCGGCG AAGTAAGCCTAGATGGTGAATTCCAGGAGGTGGACGGGAAGGAAGGTGAACCGGCGGTTCCCGGTTTCCAGTCAGTAAGA ATAGACGCGGATCTCAACACAAAGGGTAATTCAATTAATGCTATTGAGGGGCTCGACAAAGTAATTATGGAAATTGATGG GAAGGAGGATTCAGAATATACAACGGCTCATAATAGAGAAAGTGGAAAGATGGGGAAAAGTTTGACTAATGAGGGGTCAC GTGAGATGCTGCCATTGGGTTGGTGTGATAATGGGCTGGGTGATGGTGCTAAAAGGCTAAGCACTGAGCCCGAAAGGGTG GATCTAAGTTGGGAAGGAATTGAACAGCTTGGTAATGGGCTAAGTGCAGAAAGCCCATTAAGAGAGGATGTTGGTGTGCG AATTGCTCAAGAAGGGAACTATGAGGGCCAAGTAAAGGAGGTCAACTTGAGTCATCAATATGAACCCAGAATGGCAGAAA CGGAAAATCATGAACGGCCAAAGCAAACCAAAGAAATGTTGAGTAAGGAAATTGAGGATGACGATAGAATGGGTGGCGAC CAGGTTGTGAATGGGGGTGACATGGCTGTTGCGGTTGAGTCTGGGCCTGTGAACCCATCAGAAGGGTGCGATGGCCCAAA CAGCAAAGATGGGACGGTGATGAATGACATGGGGCGGGAGCAAGGTGTAGAGGGAGGAGGAATGAAGAAGGATAAAGCTA TACAAGAGAGAACACTTCAAGAGGAGGGTAGCACATCTGGGTCAGAGGGGGAGCAATCGGGTAAGCAAGTGAAAAAGAAG AGTAAAACCAGGAAAATGAGGGAAAATATCAAGAAGAAGGTCAGATCAAATCAAAGAAAGGTCAGTAATAATGTTCACAG CCTTAGTAATTCAATTTAAGATTCTCATATCCAAGTAGGAAATAGAAGGTTCTGGGCATATAACGCAGAGTTGGAAGCTA ATAAATTATGGGACATTGGGATGGCATTATGAGTCTCTTTTAATGGGGAAAAGGATAATATAATTAGTAATTTTGTTGGA ATGGAAAAGAGGGATAATTTAGAGTTAGAAAAGGCAAGTAGGGTAAGGGATAATGAGGGTACTGTAGGGATTCCATGAAA ATACTAAGCTTTAATATTAGGGGGTTGGGGGGGGAAGTGAAAAAAAGGGAAGTTAGAAATATAGTACATAGGGAAAATAT AGACTTAGTATGTATTCAGGAAACCAAGAAAGAGGTGGTTGACCACTGGCTGTGTAAATCAGTATGGGGTTCTGAGTCTT TTGAATTCGCTGCTAGGCCTTCAATTGGGTCTGTAGGAGGTCTGTTAATTATTTGGGATAAAGGAAAGTTCGTCAGGTCT AGTTCATTTCAAGGAGATGGGTTTGTGGGGGTTAAAGGGTGTTGGGGGAGCTCTAGCGAGCCTTGCATCATTGTAAATGT ATATTCCCCTTGCTCCATCAATGAGAAAAGAAAATTGTGGGAGGATTCGTTAGAGGTTAGGAGAGCGGAGGGGGATGGGT TATGGTGCGTTGTGGGCGATTTTAATGCTGTTAGGAGGAGTGATGAGAGAGTAGGACAGAACTTTGGGGGGTCCCAAAGA GGAGTGGAGATTAGGGAGTTTAACGAGTTTATTGAGGCCATGGAATTATTAGATATTCCGATGGTTAACAAAAAGTTCAC TTGGTACAGGAGTGGGAGTACTGCTAGGAGCAGGATAGATAGGGCATTAGTATCTGTAGAATGGCAACAAAAGTGGCCAA ATTGTGCGCAACATGTTCTTAAAAGGTCTGTCTCTGATCACTGTCCGTTAGCGGTTAAGCATTCAGAGGTGAATTGGGGG CCCAAACCGTTTAGGATATTGGATTGCTGGTCTAGGGATACAAAATTTGCTAAGATGGTGGGGGAAAAGTGGAACGAGGG TAGTGTGAGTGGGTGGGCTGCATTTGTATTTAAGGAAAAATTAAAGAGGCTGAGAGGAGAAATAAAGTTGTGGGCTAAAG ATAATTCAGGGGATCCTAGAGAGGAGATTAGGAGGACAGTGGATGAGATAAGTAAACTGGATCTGTTAATTGAAATGGAA GAGATGAGTGAGCTAGATTTAGTGAGAAGAAAAGAGCTAACTGCAGAATTTTGGAGGTTTGCAAGAATAAATGAATCGGT GCTTAGACAAAAGTCTAGATGTAGGTGGGTTAAAGAGGGGGACAGGAACACAAGGTACTTTCATGCAATCATTAGTAAAA GAAGAAGTACAAATTATATTCATGGTATTAGGATAGGAGATGATTGGGGAGAAGAGCCGGCTAGAGTAAAGGATGAGGTT AGGGCATTCTTTGAAAACAGGTTTAGGGAGCTGAACAAAAATAGGCCTAGCTTGGATGGAGTCAACTTTAGGAATTTAAG TGAGGCTCACCGTAGGCTGTTAGAGAAACCTTTTGATGCTGAGGAGATAAAATTAGTTGTGTGGGAATGTGAGGGTAGCA AAAGCCCAGGTCCCGATGGGTTCAATTTTTCATTTATTAAGAGGTTTTGGGAGGTGTTAAAGGAAGATGTTTGGACGATG ATGAATGAGTTTCATAGAAATGAGACACTTCTGAAGGGATGTAACTCGTCGTTCATAGCACTTATTCCCAAGGTTGGGTC CCCACTAAGCCTTAATGATTATAGACCAATTTTCTTGGTGGGTTGCCTGTATAAAATATTAGCAAAAGTACTGGCTGGTA GGTTGAAATTAGTAATCAGTAAAGTTGTAGAGGAAAATCAATCTGCTTTCTTGGGTGGGAAAAATATGCTTGATGGGGTA GTAATAGCTATTGAAGTGATTGATGAGGCTAAAAGTAAGAAGAAACCATGTTGCCTTCTTAAATTAGATTTTGAGAAGGC TTATGATTCTGTGTCCTGGGATTTCCTCTATTATATGATGGGTAGGATGGGTTTTGGGTATAAATGGATTAAGTGGATTA AATGTTGTGTTGAGTCTGGAACAATTTCTGCTTTGGTAAATGGGAGTCCAACAGGTGAGTTTAAAATGGAAAGAGGTTTT AGACAGGGTGACCTCATTGCTCCTTTTCTATTCCTGAATGTGGCTGAAGGGTTAGGTGGTTTGATGAGAGAGGCTGTAAA AAAGTTGTTCTCTGGGTTCAAGGTGGGTAAGAATAATCTGGAGGTATCTCACATTCAGTTCGCAGATGATACTTTACTGA TTGGGGATATGATGCTGGAAAATGTGTACACAATCAAAGGCATCTTGAGGTGGTTTGAGTTGGTATCCGGGTTGAAAGTC AATTTCTACAAGAGCAAATTAGCAGGCATAGCGGTGCATGAAGAGGTGACAAACCAGTTTGCTGCTCTATTAAATTCCAA GGTTATGGTTGCCCCCTTTGTGTATTTGGGGATTGAGGTGGGAGTGAATCCTAGGAGGGCTAGCACATGGGAACCGGTGT TACGGAGGTTGCAGAAGCGGCTGACCACTTGGAAGATGAAGCACCTCTCCTTTGGTGGGTGCCTTTGTCTCTTAAACTCG GTACTTAGTTCTATTCCTCTCTTTTATTTATCTTTTTACAAAATTCCCTTATCTGTGGCTAACAAAGTTAAAAAGTTGCA GCGTTCATTTCTTTGGGGAGGGGATGGGGAGGAGAGAAAAATATCATGGGTTAGTTGGGACATGGTGTGGAGACCAAAGG AGCAAGGTGGGTTGGGGGTGAAAGATATAGTAGCATTTAATAGGGCCCTTTTGTGCAAATGGAGGTGGCGTGTAATGAAT GATGGGGATAGTTTGTGGGGGCAGGTTCTGTGTTCTAAATATGGGGAAGGGGTTCGGATCGGTGAAGAGTCTAGTTGGAG AAAAGGGTCTAGGTGGTGGAGGGATCTAGGGAAAGTGGGGGTGTGTCGGGACAAAGGGGAGTGGTTTAGTAGGAACGTGA AGAGAGTGATAGGGAATGGAAAATCAGTGAGATTTTGGGATGAGTGTTGGGTAGGAGATTTGAAGTTAAAACAGAAATTT AAAAGACTATTTGAGCTTTCTGAACAGAGGGATTTGGTGGTGGGGGAATTGGGGGAGTGGGAGGGTATGAGTTGGAAGTG GAAATTTAGGTGGAGAAGGGATCTTTTTGAAAGAGAGCAACAATTGGTTGAGGCTCTAATACAGGAAATTTCAGCAGTTC AGATCAGGAAAGAGAAGCATGATGGCTGGACCTGGGCATGTGATCTAGTTGCTGGCTATACTGTTAAGTCAGCGTATCTG GCCCAGTGTGTGGCAGTGTGTGAATCTGATTTCTTCAAGACTATGTGGAGAAGTCTTGCATGCTCCATCTAAAGTACTAG GACTGGCGTGGAAAATTGCTCATGGAAGGATGCCTACACTGGATAATCTCTTGAAGAGGGGAATGGATCTAGGCAATAAC AATGATGGTCACTGTTTTTTCTGCTCTCAGCATACAGAGGAGGTCTCTCATCTGTTTTTTAGCTGCGACTTTTCATACAA AATATGGATGGGGTGTTATACATGGTTGGGTGTGGAGACTGTACTTCATAATGCTTATGATATTCATTTCTTTCATCATG AGCATTGGGGAAAAAACAAAAAACAGAGATTAGCGTGGAGAAGTATTTGGCTGGCTGTCCTTTGGTGTGTTTGGATTCAT CGAAATGCTATTGTTTTTAAAGGGGAACAATTGTGTTTGGAGGTGGTGGTGGATATGATAAAATTAACATCTTGGCTTTG GCTAAAGTCCATTATGCAGGGATTCATTGTTTCTTTTTATGCTTGGGATAAGGAACCTTGGGTGTGCTTGTCTGGGTTAT AGGACAGTGGGGGACGTATAGTGGGGTGGGCGGTCCACTGTAATGTAATTTGCTATGGTGGACATACCCCTAAAGATTTG ATCATTTCAATTTATTTTCTATTGTGTGTTGCTTTAACTTGTTTCCTATCTTGTACTTGGGTTGGGGCACCCCTTGTGCT CCTATTTAATTTATTTTGGCCTTTCAAAAAAAAAAACATCCTATAATCATCCGCTCATGAAGCTCAATAAAGTGTTAACT TGATGGTCATTTATTCTTAATAGACTAAGATGAATGTCAGATGAAGTAGAATTTTCAATTTCAATATTTCTGCAAAAGTT AGAACAGTTAGAACTCTAATTGTATAAACCCGCTTGCTAATAAATGGTTCTTCCAGGATCTAGTAGTATTTCGAATACTC CACACTAACTATTATGACATGAAAGACTAAAGCAAGTTTGTTCACCTTAGCCTGAATTTCAGGGTGCCTTACAACAACAG AATCGGGATACCTCAAAATGCCATAAAATATAATACATACAAGAAAATATTTACAATATTCTTAACTTAATTATATACAT AATATTGTGATCAT
CDS sequence (LotjaGi5g1v0085700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTACACTGGATAATCTCTTGAAGAGGGGAATGGATCTAGGCAATAACAATGATGGTCACTGTTTTTTCTGCTCTCA GCATACAGAGGAGGTCTCTCATCTGTTTTTTAGCTGCGACTTTTCATACAAAATATGGATGGGGTGTTATACATGGTTGG GTGTGGAGACTGTACTTCATAATGCTTATGATATTCATTTCTTTCATCATGAGCATTGGGGAAAAAACAAAAAACAGAGA TTAGCGTGGAGAAGTATTTGGCTGGCTGTCCTTTGGTGTGTTTGGATTCATCGAAATGCTATTGTTTTTAAAGGGGAACA ATTGTGTTTGGAGGTGGTGGTGGATATGATAAAATTAACATCTTGGCTTTGGCTAAAGTCCATTATGCAGGGATTCATTG TTTCTTTTTATGCTTGGGATAAGGAACCTTGGGTGTGCTTGTCTGGGTTATAG
Protein sequence (LotjaGi5g1v0085700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTLDNLLKRGMDLGNNNDGHCFFCSQHTEEVSHLFFSCDFSYKIWMGCYTWLGVETVLHNAYDIHFFHHEHWGKNKKQR LAWRSIWLAVLWCVWIHRNAIVFKGEQLCLEVVVDMIKLTSWLWLKSIMQGFIVSFYAWDKEPWVCLSGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 80 | 80 | - | – | |
PANTHER | 2 | 138 | 137 | 7.1E-23 | – | |
PANTHER | 2 | 138 | 137 | 7.1E-23 | – | |
Pfam | 2 | 46 | 45 | 6.5E-9 | ||
Phobius | 81 | 101 | 21 | - | – | |
Phobius | 102 | 120 | 19 | - | – | |
Phobius | 121 | 139 | 19 | - | – | |
Phobius | 140 | 150 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0085700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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