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LotjaGi5g1v0085700.1

Overview

Field Value
Gene ID LotjaGi5g1v0085700
Transcript ID LotjaGi5g1v0085700.1
Lotus japonicus genome version Gifu v1.2
Description RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|O31428|SKFF_BACSU Putative bacteriocin-SkfA transport system permease protein SkfF; TrEMBL-Plants: tr|A0A151R977|A0A151R977_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0085700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:14777454..14784987) extracted from Lotus japonicus Gifu genome v1.2.

AAACAATGATAATGGGAAAAAAGAACTAATTGTAACTTGACATAAGAAAAGTATATCGCATTCTGTTGTTGATTGCGGAC TATGCTTGCAAGAGGTAGAATTCTGTAACCATTTTTTTTCATCTGCCATATCAGTTGGCGGGTCTGGCAAAAAATTATTA ACTGGATTGGAATTGTTTCTATTATGCCTGCGGATCCTGTAACCCACTTTTTCCAGTTCCGTGCGTCTTTGGGAGGAGAT GCTAAATCTGTGAAAGCGTTATCTGTTAATTGGGTAGCTTGCCTTAGCGTCATCTGGTACTCTCGGAACAATGCTATTTT CAAGAATGAGGAAGTGAATGCTGAATGGATTTTTGAGCTAATTCAATTCCGCTCCTGGTTTTGGCTAAAGGCAAAGGAGA AGAATTTTTTAGCTTCTAATTTTGAGTGGGTTTCAAATCCTACCCACTGCTTTAAATCCTTGATCTGATCTGGTGTGGAT GAAGGGTTGTTGTTGGGTGTGTTGGTTACTGATTTCTTTCTCATCTGTAGGGGACGGTTTTTCTAGATTTTTGAGGGGTT GGTACATTAGTTTGTTATATCTGATAATTTTTCAAAGTCCATGTTGTAGCTTCTTTTATCTATAATCTTGTTACTTTCTA TCTTGTATTTGGGTAAGCACCCATTGTGCTTTATTTGAATACAATTGACTTATCAAAAAAAAAAAATATATCGCATTTGC TAAGTTGGACATAAGTATATAAAATTCTAATTCTTTCGCATTAACAAAATGATCAAGTAATTAAAATTTTCTCCAACAGC AACAGTTGCTCATTTCATTCTTTTCACCTTTTTAGTTCTAACTCAATTTGTTATCAGGCGACATCTTTTCTTGTGTCCTA AAAAAAATTCAAATGACTATAACTCAAAAGTTGCATTTCTCTACAACAACTCAAGCGAAGTATAAGATAAACGAAATAAG AAAGTGAATTTGAGAAAACGACTACCTCTAGTGGTTGAGCTAGTGATGCATGTAGTTGGTGAGATTGCATGCATAACCCT TATTGTTGACATTTCTACTACAAAACATACCGAAGAAAGTGAACAAGCAGGGACAAAGGTTCGGATTTGTTAGATATCTT GAAGTGCAGGAGCCAAGGAGATTGGAACAGCAACTGGTTAGTGTTATTGGGGGTAGCTTGAATATGCAAATTAACCTACC AAGGTTTGTGAGGAATACAGGGGAAGCAAAAGCAATTGAGTACTAGAAGGGAAAATCTGGAGTCATTGCAAAGGAAAGGA CGGTGGAGAGGAAATCATTGTCCGATGCAGAAGCTGTCAAACAAGGGGAGCGGGGGCACCCAACAATAAATACTAATAAC CGGGACGACACAGTGGGAAAGAAGCGACATGGAACGGTGAGGAGGAGGTGGATACCGAGGAAGAGCGACGATGAGGAAGA GTGGAAATGGCCAGTGCTTCAGTTTCAGAGCAACAATTTGGAATGGTTGAGGAATAGCTGTGTTGGGAGCCTCTATGATC CATTAAAATTGGAAACGCTCCATGAAACGTTTCAGCTATTGGGGTATAACTCAATTAAAATCAGACACCTAGCTAGGGGA TAACCTGGTTTTATTATCAGATGTGGATGGGGGTAATGTGCAAGAACTATTGTCAGGGGCAGAGGACTGGCTGGAGACCA TTTTTGAATATGTAAGTTTGTGGTCACCGGCTTTAACTCCGGCGGGTAGACTTGTATGGCTGAGGTGTAGTGGGGTTCCC CTAGATGTTTGGCATGATGATTTCTTCGAGCAGCTTGTGGGGGGGATCGGTTAGTTTATGTGCATGGACATAAACACAAG TTGCTACTCAAGGATTGATTTTGCACGCATACTAGTGAGAACTCAGATGCAGGAACCAATAGCAGTAATCAAAAGGGTCA AAATCAATGATTTGGCGTTAACTGTCAGGCTCATTGAGGAACTTGGGGGGGAAGTACTGAAGCGATGCAACTGTGTTCAG AGAGAAAATGATGGGGGGATGAACTCAACTTCTTCTGAATCGGAAAGCAGTTTTGGTGGACTAGAAGGAGAGGATGACTG GGAGTGTAACTCGATGGTACCAGGAAGCGTGGGATTTGAATCGGTATGGGAAAAGGAAAATTATGGTGTTGTCTCCGGCG AAGTAAGCCTAGATGGTGAATTCCAGGAGGTGGACGGGAAGGAAGGTGAACCGGCGGTTCCCGGTTTCCAGTCAGTAAGA ATAGACGCGGATCTCAACACAAAGGGTAATTCAATTAATGCTATTGAGGGGCTCGACAAAGTAATTATGGAAATTGATGG GAAGGAGGATTCAGAATATACAACGGCTCATAATAGAGAAAGTGGAAAGATGGGGAAAAGTTTGACTAATGAGGGGTCAC GTGAGATGCTGCCATTGGGTTGGTGTGATAATGGGCTGGGTGATGGTGCTAAAAGGCTAAGCACTGAGCCCGAAAGGGTG GATCTAAGTTGGGAAGGAATTGAACAGCTTGGTAATGGGCTAAGTGCAGAAAGCCCATTAAGAGAGGATGTTGGTGTGCG AATTGCTCAAGAAGGGAACTATGAGGGCCAAGTAAAGGAGGTCAACTTGAGTCATCAATATGAACCCAGAATGGCAGAAA CGGAAAATCATGAACGGCCAAAGCAAACCAAAGAAATGTTGAGTAAGGAAATTGAGGATGACGATAGAATGGGTGGCGAC CAGGTTGTGAATGGGGGTGACATGGCTGTTGCGGTTGAGTCTGGGCCTGTGAACCCATCAGAAGGGTGCGATGGCCCAAA CAGCAAAGATGGGACGGTGATGAATGACATGGGGCGGGAGCAAGGTGTAGAGGGAGGAGGAATGAAGAAGGATAAAGCTA TACAAGAGAGAACACTTCAAGAGGAGGGTAGCACATCTGGGTCAGAGGGGGAGCAATCGGGTAAGCAAGTGAAAAAGAAG AGTAAAACCAGGAAAATGAGGGAAAATATCAAGAAGAAGGTCAGATCAAATCAAAGAAAGGTCAGTAATAATGTTCACAG CCTTAGTAATTCAATTTAAGATTCTCATATCCAAGTAGGAAATAGAAGGTTCTGGGCATATAACGCAGAGTTGGAAGCTA ATAAATTATGGGACATTGGGATGGCATTATGAGTCTCTTTTAATGGGGAAAAGGATAATATAATTAGTAATTTTGTTGGA ATGGAAAAGAGGGATAATTTAGAGTTAGAAAAGGCAAGTAGGGTAAGGGATAATGAGGGTACTGTAGGGATTCCATGAAA ATACTAAGCTTTAATATTAGGGGGTTGGGGGGGGAAGTGAAAAAAAGGGAAGTTAGAAATATAGTACATAGGGAAAATAT AGACTTAGTATGTATTCAGGAAACCAAGAAAGAGGTGGTTGACCACTGGCTGTGTAAATCAGTATGGGGTTCTGAGTCTT TTGAATTCGCTGCTAGGCCTTCAATTGGGTCTGTAGGAGGTCTGTTAATTATTTGGGATAAAGGAAAGTTCGTCAGGTCT AGTTCATTTCAAGGAGATGGGTTTGTGGGGGTTAAAGGGTGTTGGGGGAGCTCTAGCGAGCCTTGCATCATTGTAAATGT ATATTCCCCTTGCTCCATCAATGAGAAAAGAAAATTGTGGGAGGATTCGTTAGAGGTTAGGAGAGCGGAGGGGGATGGGT TATGGTGCGTTGTGGGCGATTTTAATGCTGTTAGGAGGAGTGATGAGAGAGTAGGACAGAACTTTGGGGGGTCCCAAAGA GGAGTGGAGATTAGGGAGTTTAACGAGTTTATTGAGGCCATGGAATTATTAGATATTCCGATGGTTAACAAAAAGTTCAC TTGGTACAGGAGTGGGAGTACTGCTAGGAGCAGGATAGATAGGGCATTAGTATCTGTAGAATGGCAACAAAAGTGGCCAA ATTGTGCGCAACATGTTCTTAAAAGGTCTGTCTCTGATCACTGTCCGTTAGCGGTTAAGCATTCAGAGGTGAATTGGGGG CCCAAACCGTTTAGGATATTGGATTGCTGGTCTAGGGATACAAAATTTGCTAAGATGGTGGGGGAAAAGTGGAACGAGGG TAGTGTGAGTGGGTGGGCTGCATTTGTATTTAAGGAAAAATTAAAGAGGCTGAGAGGAGAAATAAAGTTGTGGGCTAAAG ATAATTCAGGGGATCCTAGAGAGGAGATTAGGAGGACAGTGGATGAGATAAGTAAACTGGATCTGTTAATTGAAATGGAA GAGATGAGTGAGCTAGATTTAGTGAGAAGAAAAGAGCTAACTGCAGAATTTTGGAGGTTTGCAAGAATAAATGAATCGGT GCTTAGACAAAAGTCTAGATGTAGGTGGGTTAAAGAGGGGGACAGGAACACAAGGTACTTTCATGCAATCATTAGTAAAA GAAGAAGTACAAATTATATTCATGGTATTAGGATAGGAGATGATTGGGGAGAAGAGCCGGCTAGAGTAAAGGATGAGGTT AGGGCATTCTTTGAAAACAGGTTTAGGGAGCTGAACAAAAATAGGCCTAGCTTGGATGGAGTCAACTTTAGGAATTTAAG TGAGGCTCACCGTAGGCTGTTAGAGAAACCTTTTGATGCTGAGGAGATAAAATTAGTTGTGTGGGAATGTGAGGGTAGCA AAAGCCCAGGTCCCGATGGGTTCAATTTTTCATTTATTAAGAGGTTTTGGGAGGTGTTAAAGGAAGATGTTTGGACGATG ATGAATGAGTTTCATAGAAATGAGACACTTCTGAAGGGATGTAACTCGTCGTTCATAGCACTTATTCCCAAGGTTGGGTC CCCACTAAGCCTTAATGATTATAGACCAATTTTCTTGGTGGGTTGCCTGTATAAAATATTAGCAAAAGTACTGGCTGGTA GGTTGAAATTAGTAATCAGTAAAGTTGTAGAGGAAAATCAATCTGCTTTCTTGGGTGGGAAAAATATGCTTGATGGGGTA GTAATAGCTATTGAAGTGATTGATGAGGCTAAAAGTAAGAAGAAACCATGTTGCCTTCTTAAATTAGATTTTGAGAAGGC TTATGATTCTGTGTCCTGGGATTTCCTCTATTATATGATGGGTAGGATGGGTTTTGGGTATAAATGGATTAAGTGGATTA AATGTTGTGTTGAGTCTGGAACAATTTCTGCTTTGGTAAATGGGAGTCCAACAGGTGAGTTTAAAATGGAAAGAGGTTTT AGACAGGGTGACCTCATTGCTCCTTTTCTATTCCTGAATGTGGCTGAAGGGTTAGGTGGTTTGATGAGAGAGGCTGTAAA AAAGTTGTTCTCTGGGTTCAAGGTGGGTAAGAATAATCTGGAGGTATCTCACATTCAGTTCGCAGATGATACTTTACTGA TTGGGGATATGATGCTGGAAAATGTGTACACAATCAAAGGCATCTTGAGGTGGTTTGAGTTGGTATCCGGGTTGAAAGTC AATTTCTACAAGAGCAAATTAGCAGGCATAGCGGTGCATGAAGAGGTGACAAACCAGTTTGCTGCTCTATTAAATTCCAA GGTTATGGTTGCCCCCTTTGTGTATTTGGGGATTGAGGTGGGAGTGAATCCTAGGAGGGCTAGCACATGGGAACCGGTGT TACGGAGGTTGCAGAAGCGGCTGACCACTTGGAAGATGAAGCACCTCTCCTTTGGTGGGTGCCTTTGTCTCTTAAACTCG GTACTTAGTTCTATTCCTCTCTTTTATTTATCTTTTTACAAAATTCCCTTATCTGTGGCTAACAAAGTTAAAAAGTTGCA GCGTTCATTTCTTTGGGGAGGGGATGGGGAGGAGAGAAAAATATCATGGGTTAGTTGGGACATGGTGTGGAGACCAAAGG AGCAAGGTGGGTTGGGGGTGAAAGATATAGTAGCATTTAATAGGGCCCTTTTGTGCAAATGGAGGTGGCGTGTAATGAAT GATGGGGATAGTTTGTGGGGGCAGGTTCTGTGTTCTAAATATGGGGAAGGGGTTCGGATCGGTGAAGAGTCTAGTTGGAG AAAAGGGTCTAGGTGGTGGAGGGATCTAGGGAAAGTGGGGGTGTGTCGGGACAAAGGGGAGTGGTTTAGTAGGAACGTGA AGAGAGTGATAGGGAATGGAAAATCAGTGAGATTTTGGGATGAGTGTTGGGTAGGAGATTTGAAGTTAAAACAGAAATTT AAAAGACTATTTGAGCTTTCTGAACAGAGGGATTTGGTGGTGGGGGAATTGGGGGAGTGGGAGGGTATGAGTTGGAAGTG GAAATTTAGGTGGAGAAGGGATCTTTTTGAAAGAGAGCAACAATTGGTTGAGGCTCTAATACAGGAAATTTCAGCAGTTC AGATCAGGAAAGAGAAGCATGATGGCTGGACCTGGGCATGTGATCTAGTTGCTGGCTATACTGTTAAGTCAGCGTATCTG GCCCAGTGTGTGGCAGTGTGTGAATCTGATTTCTTCAAGACTATGTGGAGAAGTCTTGCATGCTCCATCTAAAGTACTAG GACTGGCGTGGAAAATTGCTCATGGAAGGATGCCTACACTGGATAATCTCTTGAAGAGGGGAATGGATCTAGGCAATAAC AATGATGGTCACTGTTTTTTCTGCTCTCAGCATACAGAGGAGGTCTCTCATCTGTTTTTTAGCTGCGACTTTTCATACAA AATATGGATGGGGTGTTATACATGGTTGGGTGTGGAGACTGTACTTCATAATGCTTATGATATTCATTTCTTTCATCATG AGCATTGGGGAAAAAACAAAAAACAGAGATTAGCGTGGAGAAGTATTTGGCTGGCTGTCCTTTGGTGTGTTTGGATTCAT CGAAATGCTATTGTTTTTAAAGGGGAACAATTGTGTTTGGAGGTGGTGGTGGATATGATAAAATTAACATCTTGGCTTTG GCTAAAGTCCATTATGCAGGGATTCATTGTTTCTTTTTATGCTTGGGATAAGGAACCTTGGGTGTGCTTGTCTGGGTTAT AGGACAGTGGGGGACGTATAGTGGGGTGGGCGGTCCACTGTAATGTAATTTGCTATGGTGGACATACCCCTAAAGATTTG ATCATTTCAATTTATTTTCTATTGTGTGTTGCTTTAACTTGTTTCCTATCTTGTACTTGGGTTGGGGCACCCCTTGTGCT CCTATTTAATTTATTTTGGCCTTTCAAAAAAAAAAACATCCTATAATCATCCGCTCATGAAGCTCAATAAAGTGTTAACT TGATGGTCATTTATTCTTAATAGACTAAGATGAATGTCAGATGAAGTAGAATTTTCAATTTCAATATTTCTGCAAAAGTT AGAACAGTTAGAACTCTAATTGTATAAACCCGCTTGCTAATAAATGGTTCTTCCAGGATCTAGTAGTATTTCGAATACTC CACACTAACTATTATGACATGAAAGACTAAAGCAAGTTTGTTCACCTTAGCCTGAATTTCAGGGTGCCTTACAACAACAG AATCGGGATACCTCAAAATGCCATAAAATATAATACATACAAGAAAATATTTACAATATTCTTAACTTAATTATATACAT AATATTGTGATCAT 

CDS sequence (LotjaGi5g1v0085700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTACACTGGATAATCTCTTGAAGAGGGGAATGGATCTAGGCAATAACAATGATGGTCACTGTTTTTTCTGCTCTCA GCATACAGAGGAGGTCTCTCATCTGTTTTTTAGCTGCGACTTTTCATACAAAATATGGATGGGGTGTTATACATGGTTGG GTGTGGAGACTGTACTTCATAATGCTTATGATATTCATTTCTTTCATCATGAGCATTGGGGAAAAAACAAAAAACAGAGA TTAGCGTGGAGAAGTATTTGGCTGGCTGTCCTTTGGTGTGTTTGGATTCATCGAAATGCTATTGTTTTTAAAGGGGAACA ATTGTGTTTGGAGGTGGTGGTGGATATGATAAAATTAACATCTTGGCTTTGGCTAAAGTCCATTATGCAGGGATTCATTG TTTCTTTTTATGCTTGGGATAAGGAACCTTGGGTGTGCTTGTCTGGGTTATAG 

Protein sequence (LotjaGi5g1v0085700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPTLDNLLKRGMDLGNNNDGHCFFCSQHTEEVSHLFFSCDFSYKIWMGCYTWLGVETVLHNAYDIHFFHHEHWGKNKKQR LAWRSIWLAVLWCVWIHRNAIVFKGEQLCLEVVVDMIKLTSWLWLKSIMQGFIVSFYAWDKEPWVCLSGL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 80 80 -
PANTHER 2 138 137 7.1E-23
PANTHER 2 138 137 7.1E-23
Pfam 2 46 45 6.5E-9
Phobius 81 101 21 -
Phobius 102 120 19 -
Phobius 121 139 19 -
Phobius 140 150 11 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0085700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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