Transcript — View — Lotus Base

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LotjaGi5g1v0088800.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0088800
Transcript ID	LotjaGi5g1v0088800.1
Related isoforms 1	LotjaGi5g1v0088800.2
Lotus japonicus genome version	Gifu v1.2
Description	Protein CHUP1, chloroplastic; TAIR: AT2G36650.1 CHUP1-like protein; Swiss-Prot: sp\|Q9LI74\|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr\|A0A0B2SUL5\|A0A0B2SUL5_GLYSO Protein CHUP1, chloroplastic; Found in the gene: LotjaGi5g1v0088800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:15174644..15176827) extracted from Lotus japonicus Gifu genome v1.2.

TAAACTTACCATTAGTATAAGCTTGAGCATATGGAGAAAATATAATATAACTAATATCACAAATACCTCATGGAAGAAAA GAAGCCCAACATGACAAATATCAATTTCCAAGTGCAATAGATTAATACAGAAAGGAATCAGATTCGTTATAGCTTGAGGA GGATGGTGTTGATGGTGGCGTAGAAGGCCTTTTGGAGTGGTCAAAAAGCCACATGTAAACTATTCTTCCAAACAAAGAAA ATAAACAAGGTTAAATTATATAACTTTTTAAAACCTTTGATAGCATTAAGAAGGATCAAATTCAGATTTTTCTGGTTTAG TTTTCAATTGCATTTTGATCATTGGAATAGTCTAACAAACTTCTCCTTTTGTTCTTGATGGAAAACACAGCACTGAAGCC AGAAAATCTAAAGCCAGTTATCCTCAGAGCTGGTGTTCCCCTTGCTGTATCTGTGGCTGGTTTGATCTATGCATGGATCA TGGCAAGGAAAAGCTTATCCAAAATCTCTTCTTCATCAGAAAATGAGCCTGATTCCCCTGTAACCAATTGTCATGAAGGA AGTAAACAACATGAAGAAAGCTTTCCTAGCCATTCTTCTATGGAAGATGAAGAACCTGTTGTGACTCTGACACGGACACC GGACACCACACGACACGGATACAGTGACACGGTTAACATCCAAAAAGTGTGTCGTGTCCTTTCTGGGAGCATGGAAATCC TTGACAACCATCCATGTTTGGAACAAGAGATCACTGGCCTAAGAAGCCGAATCGAAAGTCTGCAAATGAGAGAATTGGCC TTAAATTTGCAGTTTGAAGAGTATTGTGAAATGAAAGAGCAAGAATCTCTGCTAATGGAAATCAACAACATGCTGGCATT GGAGACCGCACGCGTCGAATTCTTGGATAGAGAGGCCTCATCCATAGAGGCAGAAACTATGAGATTGGAGAATTTTGCAG TCCAATACCTGAGGATCATTGAACAGCTTGAGTTTTGGAAATCAGAATATGGGATTCTTCAGAGGAAGGTTCAGAAGCTA CATAGGAAAACAAAGGCGCAATCCCACTTGATAAAGGAGCAGACTTTGAAGATCAAAGAGGAACAAGAAGAAATCTTGAA GAGCCATGATGCCTTGCAAACAAGGATTAGTGTGATTAACAAGTTAGAGGATGAAATCAGAGAGCTAAAAATGGTTTTGG ATCAATTGCAGGAGGAGAAGAATGAACTTCAGAAGAAGCTTGACACAGCAGAAGAATTTCCTTCTAAGGATCAGGTTCAT AGAAAACCACTGAAATATTATTTGCAGATTGAATCAGAAGATTACAGCCTGCTTCTGAATGAATTAGAGCAGGTCAAGAA GGAACGCGAAACTGAAGCTGAAGAATTGATTAACTTGAGGAGGATCAATGCTTTCTTAAGGCAAGAGTTATTGGGAAACC ATGAGAAACAACAGGATCAGGATAGAGACCATAATATGGAGCTGGAATTTGAAGGGAATGGAGGAGTTATGCAGTATGAT TCAGAGCATGAATTTCAGTGTTCCTTTTGGGAGAATCACAAGGTTTCTTGCATTGGTTCTGCTCATAATGATCAAGCAAG TTCCAAAAGGAGAAAGTTGCTTAAAAGGTTGAAGAGATGGGTGGAAGGAAGTGAAAAGGTAAGAGTGAAACCAGAGGAGA AAGGTGAAATTAAGTGTTTTGGTGAGCATTCTGTTTTCTATGGATCACCGAAACCTGAAGTTTCTGCTACTGCAAGGTTT TGTTCTAGTGCTTAAGTCAAAATAGCATGAGCCCCATTTGGATACGAACCAAACAGCCAAATAGCACTGATTAGAGTTTC TCCATTAAAAAGTGCATTAGATAAGTTCTAATATGTGCTTTTTTGGTCCATGTCCAATCTGGCTCAACTAGGTAGTCATT GATACTATCTAATAAAGAAAATTTGATGTCTGATGTATAAGTTGTGACACTGCATTGTTGAAAAATAAATGATGATGCAA TTTCATTTTAAACTTTATATACATTATAATTTGTTTATTGCTGCAAGGAGAATATTGGTTAAAATAAATTTAGTTATATA TTATAGATTATACATTATACATTATAATCTTTAACGTGATTGGACGATGAGTTATTTAACCCAAACTTTCTCATGAATCA TTTAGACAACTCCATTAAAAATTA

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0088800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAAACACAGCACTGAAGCCAGAAAATCTAAAGCCAGTTATCCTCAGAGCTGGTGTTCCCCTTGCTGTATCTGTGGC TGGTTTGATCTATGCATGGATCATGGCAAGGAAAAGCTTATCCAAAATCTCTTCTTCATCAGAAAATGAGCCTGATTCCC CTGTAACCAATTGTCATGAAGGAAGTAAACAACATGAAGAAAGCTTTCCTAGCCATTCTTCTATGGAAGATGAAGAACCT GTTGTGACTCTGACACGGACACCGGACACCACACGACACGGATACAGTGACACGGTTAACATCCAAAAAGTGTGTCGTGT CCTTTCTGGGAGCATGGAAATCCTTGACAACCATCCATGTTTGGAACAAGAGATCACTGGCCTAAGAAGCCGAATCGAAA GTCTGCAAATGAGAGAATTGGCCTTAAATTTGCAGTTTGAAGAGTATTGTGAAATGAAAGAGCAAGAATCTCTGCTAATG GAAATCAACAACATGCTGGCATTGGAGACCGCACGCGTCGAATTCTTGGATAGAGAGGCCTCATCCATAGAGGCAGAAAC TATGAGATTGGAGAATTTTGCAGTCCAATACCTGAGGATCATTGAACAGCTTGAGTTTTGGAAATCAGAATATGGGATTC TTCAGAGGAAGGTTCAGAAGCTACATAGGAAAACAAAGGCGCAATCCCACTTGATAAAGGAGCAGACTTTGAAGATCAAA GAGGAACAAGAAGAAATCTTGAAGAGCCATGATGCCTTGCAAACAAGGATTAGTGTGATTAACAAGTTAGAGGATGAAAT CAGAGAGCTAAAAATGGTTTTGGATCAATTGCAGGAGGAGAAGAATGAACTTCAGAAGAAGCTTGACACAGCAGAAGAAT TTCCTTCTAAGGATCAGGTTCATAGAAAACCACTGAAATATTATTTGCAGATTGAATCAGAAGATTACAGCCTGCTTCTG AATGAATTAGAGCAGGTCAAGAAGGAACGCGAAACTGAAGCTGAAGAATTGATTAACTTGAGGAGGATCAATGCTTTCTT AAGGCAAGAGTTATTGGGAAACCATGAGAAACAACAGGATCAGGATAGAGACCATAATATGGAGCTGGAATTTGAAGGGA ATGGAGGAGTTATGCAGTATGATTCAGAGCATGAATTTCAGTGTTCCTTTTGGGAGAATCACAAGGTTTCTTGCATTGGT TCTGCTCATAATGATCAAGCAAGTTCCAAAAGGAGAAAGTTGCTTAAAAGGTTGAAGAGATGGGTGGAAGGAAGTGAAAA GGTAAGAGTGAAACCAGAGGAGAAAGGTGAAATTAAGTGTTTTGGTGAGCATTCTGTTTTCTATGGATCACCGAAACCTG AAGTTTCTGCTACTGCAAGGTTTTGTTCTAGTGCTTAA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0088800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENTALKPENLKPVILRAGVPLAVSVAGLIYAWIMARKSLSKISSSSENEPDSPVTNCHEGSKQHEESFPSHSSMEDEEP VVTLTRTPDTTRHGYSDTVNIQKVCRVLSGSMEILDNHPCLEQEITGLRSRIESLQMRELALNLQFEEYCEMKEQESLLM EINNMLALETARVEFLDREASSIEAETMRLENFAVQYLRIIEQLEFWKSEYGILQRKVQKLHRKTKAQSHLIKEQTLKIK EEQEEILKSHDALQTRISVINKLEDEIRELKMVLDQLQEEKNELQKKLDTAEEFPSKDQVHRKPLKYYLQIESEDYSLLL NELEQVKKERETEAEELINLRRINAFLRQELLGNHEKQQDQDRDHNMELEFEGNGGVMQYDSEHEFQCSFWENHKVSCIG SAHNDQASSKRRKLLKRLKRWVEGSEKVRVKPEEKGEIKCFGEHSVFYGSPKPEVSATARFCSSA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	13	13	-	–
PANTHER	PTHR31342 View details on PTHR31342 Search for proteins/transripts with this domain View external data on PTHR31342	5	465	461	8.1E-142	IPR040265 Show description in modal box View details on IPR040265 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31342:SF10 View details on PTHR31342:SF10 Search for proteins/transripts with this domain View external data on PTHR31342:SF10	5	465	461	8.1E-142	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	13	35	23	-	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	14	34	21	-	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	35	465	431	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	44	95	52	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	44	58	15	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	59	74	16	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	78	95	18	-	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	260	294	35	-	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	309	343	35	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0088800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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