Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0089100.2

Overview

Field Value
Gene ID LotjaGi5g1v0089100
Transcript ID LotjaGi5g1v0089100.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Threonine dehydratase; TAIR: AT3G10050.1 L-O-methylthreonine resistant 1; Swiss-Prot: sp|Q9ZSS6|THD1_ARATH Threonine dehydratase biosynthetic, chloroplastic; TrEMBL-Plants: tr|A0A0L9TWQ1|A0A0L9TWQ1_PHAAN Threonine dehydratase; Found in the gene: LotjaGi5g1v0089100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:15457779..15462200) extracted from Lotus japonicus Gifu genome v1.2.

TTACAATTTCAACTTGTTTAACAGCTAGTTCTACCAAACACTTTTGTTTCAATCACGTAGCTTTTCAGCTTTCAGCTAGC TTATCAGCTTTCAGCTATCAGCTAGCTTATAAGCTTTCAGCTAGCTTTTCAGCTTTCATCTAACTTATCAGCTAATCATG CCAAACATAGCCTTAACCTCAAATTTTTTATGCGCGCCCAGTAATACTTATTTATGCAAAGTGACCTAATCCGACCTATT TCCGCCTTATATAATTTGAGTTGTGTCGTGTTGTATCTCATCCCCACCCACCACAAAGTACCTACGATTCACGTGACTAG GAAGAGCACATAGACCAAGACACATCCTCACTCTCGATCTGCAATGCAATTCACTTCATTTCCCTCCCTTTCAATCATTT AATCATAACATAATAATAACGTGGTCTTCTTTTACTATAAATTACTATTACACAAACCTTGACTCGCTCGCCATCACAAC AACAACCCCTTTTCGCAGAACCACCACCCACCATGGAGGCGCTGCGATTCTCCACCCCTCACCCACACCAACCACCACCG TCACTCCTCCCCCGCAACGCTTTCCACAAAATGCGCCTTCACACCAACCTCCACATCAAACCCTTCATCGCCGCCACCAT GTCCAAGCCGGCAGAAATAGTAGCCTCGCCCGCTTCTTCTTCCTCCGCCGCCGCCGTCGTAGATCCTTTGTTGTCGTCGC CTCCTCCTCTCATAGTCTCAACCGATTCGCTTCAGTACCCGCCGGGCTACGTCGGCGCCGTTCCTGACCGGTCACGCTCC GATGGCGGCAGCGACGCCATGGTCTCCGCCATGAGTTACTTGACCAATATACTCTCTTCGAAGGTTTACGATGTCGCCAT TGAGTCCCCTTTGGAATTGGCGCCAAAGCTTTCCGAAAGACTTGGGGTTAACCTTTGGCTCAAGAGGGAGGATTTGCAAC CCGTGAGTTCTCATTACCATTCTTCCTTCTTTCTTGCATCTGGGTCGTTATCAAAATTTGATTTTGATGTGCAGTGATTG TGTTTGTGATTATGACTCCATGAACATGAAGATAATTAATATTAATTAATAATAACAATTTATTTGAAAGAAAACATTTA TGGCTGTGTTGTTGTGGTGGTAAAAGATTTAGCTTGAGATATTTTCCATTTGTGGATAGAAATTGATTGGAATGAACTTT GTTCAGTTTGTCTTTTTGTTTTAAGCTTCTGTATTGCCTTTTAATTTTTGGTTTAAGTTTTTAAGATGGCAGAGTTTATA CACATTTCTGGACTATGCCAAATTGGACCAAATTGACTGTGGAGTTTAACACAGGTCCTGTCTGGTTTAATGTTAATCGC GGACCGTTTCTATATTTAGGTGGAAGGTTCAGAATTGTTTGATTGAATATATGAAGCTGTGGATTGTTGCATATTCCAGG TTTTCTCATTTAAGCTCCGTGGAGCTTATAATATGATGGCTAAACTTCCAAAGGAACTGTTGGAAAAAGGGGTTATCTGC TCATCAGCTGGAAATCATGCTCAAGGAGTTGCTCTAGCTGCCAAGAGATTGAATTGCAGTGCTGTGATTGTGATGCCCGT TACCACTCCAGACATTAAGGTGCTTGTTGGTGTTATTTATTTATTTTGGATTTCTTGTTATGTCTCCAGTGAAAGAATCT GGTCAATTAAGTTATGTGTTTTCATGTCTTTAACTTTACAGTGGAAATCTGTGGAGAAGATGGGTGCTACTGTTGTCCTT ATTGGGGATTCATATGATGAAGCACAAACATATGCTAAGAAGCGTGGAAAAGAGGAGGGGCGAGCATTCATACCTCCTTT TGATCATCCTGATGTCATCATGGGTCAGGGAACTGTTGGGATGGAAATTGTGCGCCAAATGCAGGGTCCCGTGCACGCTA TCTTTGTGCCCGTCGGAGGTGGTGGTCTCATTGCCGGTATTGCTGCTTATGTGAAGAGGGTCTCTCCACAGGTGAAGATC ATTGGTGTGGAGCCCAGTGATGCAAATGCAATGGCATTGTCACTGCATCATGGTAAGAGAGTGATTTTGGACCAGGTTGG AGGATTTGCAGATGGTGTAGCTGTTAAAGAGGTTGGTGAAGAACCTTTTCGCATATGCAAGGAGTTGATTGATGGCGTTG TTCTAGTAGGCCGTGATTCAATTTGTGCATCAATAAAGGTAAGATGCCCTTTGCTTGTGAAAGATTTCATTCAGAAACCC TGAGGGATATTCTTTCGAATTATGATTTTGAGTTCAGCCTAGTTTCTTCCGTGCGAATGTTCTATAATTGAGAAAATTCA TTTTATCTTATCTTGTCAAATGAACATAAATCTGTTTTAAACATTCTCTCTTTATTTTAGTCCACAGCCAGTTTAGTTGC CGAGTTGTTATTAGTTAAGATGTAGCTGTTTTGTTTGTACCAATGAGAATTAGGATATAATTTGCTGCATAGACTTTTGA ATGTCTTATGCATTGGATGGAAAGCTTCGCAGAATCTGTATGATAATAGTAAAACTTGTTGCAGGACATGTTTGAGGAAA AGAGGAGCATATTAGAACCAGCAGGTGCTCTTGCTCTTGCTGGAGCTGAGGCATACTGCAAGTATTATGGGATCAAGGGG AAAAATGTTGTAGCAATAACTTCTGGGGCAAACATGAATTTTGATAAACTTCGCGTGGTAACTGAGCTAGCTAATGTTGG TCGTAAACAAGAGGCTGTGCTGGCAACTGTTATGCCAGAGGAGCCTGGCAGTTTCAAACAGTTTTGTAAACTGGTATGTC TATATAATTGGAATTGATTTTTCAAACATTTCAACCCTCTTAAAACAGAGTTCATCATAGTCGAATTGATTTTCTTCTGG CTTGGTAGGTGGGGCAGATCAATATCACGGAATTCAAATACAGATATAATTCCAGTGAGAAATCTGTTGTCCTTTACAGG TAAGATCATCACAAATGGATTAATTTTTTTTAAATCAATGTATTCCCAGAATACCAACATCTCTCTGGCACAATTTATTT GTTTTCAGTGATTTGTTGTATCTGTGGAAAATATCTGGTAGACAACAAGTGCTATGTGCTTATCCAAAAAAAAAAGTGCT ATGTCAAGGCCTATAATATTTTATTTTCTTTTGTATTTATGTGCAGTGTTGGTGTTCACACAGTCTCAGAACTTAAAGCA ATGAAGGAGAAACTGGAGTCTTCTCAGCTTGAAACTCATGATCTCACGGAAAGTGAATTGGTGAAAGATCACTTACGTTA CCTGGTATGTTGCGAATGCAGTCCCTTCATAGTGAACTTATTGTATCTTTTTCCCTTTTTATCAACACTTTCCCAGCTAC CGCCTACCGTCTTTATAGACACACTACTTTTTTTATGATTCCAGTCCAAATTAGCTAAGATGTTGAACAACAGTAAGAAA CATAACATGACTAAGAGCTGCTCTATTTGATTTTGTTGTCTTATGTTGCAATAGTTCTGAGTTTGTATTCGACTAAGCTA ACTTTGTTTTGAACACATTTCAGATGGGAGGCCGGTCAAATGTTCAGAACGAGGTTCTTTGTCGTTTCACCTTCCCAGAA AGACCCGGTGCATTGATGAATTTCTTGGACTCCTTCAGTCCACGTTGGAACATCAGTTTATTCCATTATCGTGCAGAGGT GTGTGAATTTCTGACATTCAATTCCTTTTGTCAAACAACACATTGCATGGGGATGTTTACACATTTTCTTTCATTTTGAT TTAACCAACCAATGAACTTTCTGATCAACAGGGTGCGGCCAGAGCAGATATCTTGGTTGGAATACAGGTTCCCAGAAATG AGATGGATGAATTCCATGGTCGGGCTAACAGACTTGGGTATGAATATAAAGTGGTGAATAATGATGATGACTTCCAGCTC TTAATGCATTGATTGCTGTATGCACTTGCCATCAATTATTGTGTATTCTAGTGTACTATAGATTATCATATATATTTCAG TAGTGGAGATCAAAGGCAGGGAAGGATTTGGCCTCCACACACGTGATCAGTTGATTAGAGTGCTTTTTACTTAGTGCGGC ACTAAGTAACTACATGTTTTTGTAATCTATAACGTTTACTAGTATTTTTTTACCCGCGCGTTGCACGGGTAATATGTCTA TTGTATTTGATACATCAATCAATATATTGATTTTTTAGATTTCTGTTTTTTCCCAATCATAACCTCAACATATGAATATG ATTGTTTGTTAACCAATTCGTTGTATTCGTGAGATAAAAAATTTGATCCATATATAAGTGGCTCTCATAGCCCTTGTTCT TTTCTAATATATACATGAAAATTATTACAGCTGACAAAAGAACTTAGAGAACTTAGTTGTGCTATATGCATTCCATTTTT AGCTGCTAAAACTTTAGATTCA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0089100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGCGCTGCGATTCTCCACCCCTCACCCACACCAACCACCACCGTCACTCCTCCCCCGCAACGCTTTCCACAAAAT GCGCCTTCACACCAACCTCCACATCAAACCCTTCATCGCCGCCACCATGTCCAAGCCGGCAGAAATAGTAGCCTCGCCCG CTTCTTCTTCCTCCGCCGCCGCCGTCGTAGATCCTTTGTTGTCGTCGCCTCCTCCTCTCATAGTCTCAACCGATTCGCTT CAGTACCCGCCGGGCTACGTCGGCGCCGTTCCTGACCGGTCACGCTCCGATGGCGGCAGCGACGCCATGGTCTCCGCCAT GAGTTACTTGACCAATATACTCTCTTCGAAGGTTTACGATGTCGCCATTGAGTCCCCTTTGGAATTGGCGCCAAAGCTTT CCGAAAGACTTGGGGTTAACCTTTGGCTCAAGAGGGAGGATTTGCAACCCGTTTTCTCATTTAAGCTCCGTGGAGCTTAT AATATGATGGCTAAACTTCCAAAGGAACTGTTGGAAAAAGGGGTTATCTGCTCATCAGCTGGAAATCATGCTCAAGGAGT TGCTCTAGCTGCCAAGAGATTGAATTGCAGTGCTGTGATTGTGATGCCCGTTACCACTCCAGACATTAAGTGGAAATCTG TGGAGAAGATGGGTGCTACTGTTGTCCTTATTGGGGATTCATATGATGAAGCACAAACATATGCTAAGAAGCGTGGAAAA GAGGAGGGGCGAGCATTCATACCTCCTTTTGATCATCCTGATGTCATCATGGGTCAGGGAACTGTTGGGATGGAAATTGT GCGCCAAATGCAGGGTCCCGTGCACGCTATCTTTGTGCCCGTCGGAGGTGGTGGTCTCATTGCCGGTATTGCTGCTTATG TGAAGAGGGTCTCTCCACAGGTGAAGATCATTGGTGTGGAGCCCAGTGATGCAAATGCAATGGCATTGTCACTGCATCAT GGTAAGAGAGTGATTTTGGACCAGGTTGGAGGATTTGCAGATGGTGTAGCTGTTAAAGAGGTTGGTGAAGAACCTTTTCG CATATGCAAGGAGTTGATTGATGGCGTTGTTCTAGTAGGCCGTGATTCAATTTGTGCATCAATAAAGGACATGTTTGAGG AAAAGAGGAGCATATTAGAACCAGCAGGTGCTCTTGCTCTTGCTGGAGCTGAGGCATACTGCAAGTATTATGGGATCAAG GGGAAAAATGTTGTAGCAATAACTTCTGGGGCAAACATGAATTTTGATAAACTTCGCGTGGTAACTGAGCTAGCTAATGT TGGTCGTAAACAAGAGGCTGTGCTGGCAACTGTTATGCCAGAGGAGCCTGGCAGTTTCAAACAGTTTTGTAAACTGGTGG GGCAGATCAATATCACGGAATTCAAATACAGATATAATTCCAGTGAGAAATCTGTTGTCCTTTACAGTGTTGGTGTTCAC ACAGTCTCAGAACTTAAAGCAATGAAGGAGAAACTGGAGTCTTCTCAGCTTGAAACTCATGATCTCACGGAAAGTGAATT GGTGAAAGATCACTTACGTTACCTGATGGGAGGCCGGTCAAATGTTCAGAACGAGGTTCTTTGTCGTTTCACCTTCCCAG AAAGACCCGGTGCATTGATGAATTTCTTGGACTCCTTCAGTCCACGTTGGAACATCAGTTTATTCCATTATCGTGCAGAG GGTGCGGCCAGAGCAGATATCTTGGTTGGAATACAGGTTCCCAGAAATGAGATGGATGAATTCCATGGTCGGGCTAACAG ACTTGGGTATGAATATAAAGTGGTGAATAATGATGATGACTTCCAGCTCTTAATGCATTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0089100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEALRFSTPHPHQPPPSLLPRNAFHKMRLHTNLHIKPFIAATMSKPAEIVASPASSSSAAAVVDPLLSSPPPLIVSTDSL QYPPGYVGAVPDRSRSDGGSDAMVSAMSYLTNILSSKVYDVAIESPLELAPKLSERLGVNLWLKREDLQPVFSFKLRGAY NMMAKLPKELLEKGVICSSAGNHAQGVALAAKRLNCSAVIVMPVTTPDIKWKSVEKMGATVVLIGDSYDEAQTYAKKRGK EEGRAFIPPFDHPDVIMGQGTVGMEIVRQMQGPVHAIFVPVGGGGLIAGIAAYVKRVSPQVKIIGVEPSDANAMALSLHH GKRVILDQVGGFADGVAVKEVGEEPFRICKELIDGVVLVGRDSICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGIK GKNVVAITSGANMNFDKLRVVTELANVGRKQEAVLATVMPEEPGSFKQFCKLVGQINITEFKYRYNSSEKSVVLYSVGVH TVSELKAMKEKLESSQLETHDLTESELVKDHLRYLMGGRSNVQNEVLCRFTFPERPGALMNFLDSFSPRWNISLFHYRAE GAARADILVGIQVPRNEMDEFHGRANRLGYEYKVVNNDDDFQLLMH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43714
24 605 582 2.2E-286 –
SUPERFAMILY
SSF53686
109 459 351 1.02E-99
IPR036052
TIGRFAM
TIGR01124
109 604 496 1.1E-206
IPR005787
CDD
cd01562
110 414 305 7.40808E-133 –
Gene3D
G3DSA:3.40.50.1100
118 421 304 1.5E-142
IPR036052
Pfam
PF00291
122 410 289 1.0E-81
IPR001926
ProSitePatterns
PS00165
146 159 14 -
IPR000634
Gene3D
G3DSA:3.40.50.1100
154 250 97 1.5E-142
IPR036052
Pfam
PF00585
423 512 90 3.5E-22
IPR001721
CDD
cd04906
432 515 84 1.26844E-33 –
Gene3D
G3DSA:3.40.1020.10
432 606 175 1.8E-63
IPR038110
ProSiteProfiles
PS51672
433 504 72 14.669
IPR001721
SUPERFAMILY
SSF55021
513 604 92 1.51E-22 –
Pfam
PF00585
518 603 86 7.2E-24
IPR001721
CDD
cd04907
525 605 81 2.95625E-36 –
ProSiteProfiles
PS51672
526 597 72 15.986
IPR001721

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004794
Molecular function L-threonine ammonia-lyase activity Catalysis of the reaction: L-threonine = 2-oxobutanoate + NH3.
Subterm of
GO:0006520
Biological process Cellular amino acid metabolic process The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
Subterm of
GO:0009097
Biological process Isoleucine biosynthetic process The chemical reactions and pathways resulting in the formation of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0089100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…