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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0094300 |
| Transcript ID | LotjaGi5g1v0094300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger A20 and AN1 domain stress-associated protein; TAIR: AT2G36320.1 A20/AN1-like zinc finger family protein; Swiss-Prot: sp|Q9SJM6|SAP4_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 4; TrEMBL-Plants: tr|B3IX31|B3IX31_LOTJA Transcription factor C2H2; Found in the gene: LotjaGi5g1v0094300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:16579197..16582252) extracted from Lotus japonicus Gifu genome v1.2.
GATGTTTCATATTTGAGAAATCAATTCAGTGTGTGTTTGGAAAACTCATTCACGATCCACGTTTGACCCCGATTCACGTT TACAGAAGCAATAAATAGTTGCTTTTGGATTTCTGGATCCACGTTTGAACTCTCCAGATTTAAAACCAAACACACTCAAT CTCATTGATTTCTATGTATCTCCGGCTTTTAACAATTTCTTTTAGGTGAAAGGAAGTTTTTTTCTGAACGCCGTGAAAGG AAGTTTATGAGAAACTTAATATGAGATATAAACCGTGTACTTATCTTGACTTATACTTAATCAAATCTCGTATACTTTCG TGGTATAATTAATCATATAAAATAAGAATTTTAATTAAAAAAATAATTATGATGATTTGTATCTTGTCCGGTTTCGCCGT TTCTTCCTTTTTCCCTCTCTCTCTCTCTCACATCACATACCTTTCTGACTGTTAATCCTTTCCCATTAAGATTCTTTCCC CCATCCTTTCCCACCACCATTCTTCTTATTATCTTCTCTTCTTCCCTTCTTCTCCTGCTCATAATCTCATTCCCAACCAC AACCACAACCACACCCTCATCTTTTCTTCAACAACCAGGTACTTTCCTTTTTCTATCTATTTTCCTTTTTCAATTTTAGT ACTTACATCAACTAAATTAGCCTATTTATAACCTTGATTTGTTCAATCTGCGCCGAAAACGATACGGTTTTTGCACTCTG TGTTTTTCTACTTTTAAGAATTTTTCGTTTCACAGCCAGCTTTTCATATTTTCTTCTGAATTTTCTCGGAATCCAAACGG ACTCACACCACACGTGTTTTTTGTTTTTTTTTCTTACCCTTTTCCTTTATAAAATCGTATAGGTTCAGAGAATTTTGATT TCCTTGAAGAAAAATAAAAGCAAAATTACCTGAGAGGTATCACAGATCTACAAACATGGCGGAAGAGCACAGATGTGAAG CTCCAGAAGGTCACCGTCTCTGCGTCAACAACTGCGGCTTCTCCGGCAGTCCAGCCACCATGGATCTCTGCTCCAAATGC TACAGAGACATCCGTTTGAAGGAACAGCAAGAAGCGTCGACCAAATCCACAATCGAAACCGCTCTCTCCAGCTCCTCCTC CGTCGCGAAACCGCCGTCTTCCACCTCATCTCCATCTCCAGCAGTCGATCTTGCACCGCCGGCTAAGGCGGAAACCGCGT CGATCTCATTAACCGCCGGTCCGATTCTCCAGGCGGCTCAGCCGAACCGGTGCGCGACGTGCCGGAAGCGCGTGGGGCTG ACCGGGTTCAAGTGCAGGTGTGAGGTGACGTTCTGTGGGGCCCACAGGTACCCGGAGAAGCACGCGTGTTCGTTTGATTT CAAGACGGTGGGGAGAGAGGCAATAGCTCGGGAGAACCCGGTGGTGAGAGCGGAGAAGCTGCGGAGGATTTGAGATTCGA TCTCAGCCGTTGGATCAATGTGGGGACCGGTTGTTGAGGCTAGTCGATCGTAGCCGTCCACGTGGACCTCCACTGAAAAT GAGAGATATCATTATTAAATGTATGATCTATTATTATCTTGTTGGAATTATTTAAAGATAACAGCTGGCTTGTCTGGTTT AGGAAGGTTGAATAAGTCGTCATGTTTATCGCGTTTGGACACACGGGAAGAAGAAAAGAAAAAGAAAATTGGAGTGAAAT TTTTAGGTCCACTATCCTCTTAGGCTATGTCATTTTGAGGGGTGGTTGAAAATTGAAATGAAGGAACTGTGATATGATTT GATTTCTGATTTGTGTCACTGGGGAATGGGTAATCTAGTGCGGTGGAGCGTTTTATGTTGCTTTCGGTAATGAATGTGAG AGTGAAGTATCATCTCATTGGCGGCAACCTTCTAGTCATTTTCTACTTTGGATGTCAATTTTTATTTTATGAATGATATC TTTTTTCTCTATGGAATAACAATTAACAAGTAAATCATTTCGCAAGTTTCTTAGTTTCTAATTGTTAATGTAAATCTTCT TTTTTTTTGTAAGGGAAATACACTTACATTAATCAATTTAAACTTCAAATACATTTACTAATAGTGCAGAATTCACTTGA AAAGGTAAAGCATCCTTTGGAAATTCTGAAGCTAGTGAGGCTAAACCTTATTACCTCCCCTCAAATGAATCACATTTAAA GCTACAAATTGGGAAGCCATCATCTTACAGTTAGTTATAACAGGGTCTATAGCGGCTATCCATGGAAGCACTCCACCACC TCTAGAGCATCTGTTTCAACTTTCGATCACTAAACTGTTCAAATCGAGTTGCAGAGCTGCTGCCATCGCCCATCATAAAG TCAATATTAAGCTTGAGTCTCCCCTCCTCAGGTTTCTGCCATTTCCCAACTCCTCCCTCGCTCCAGACCAATCTCTTAGT CTAATTTTGTCATTCTGTTCTCGCCAATCACACCCACTGTATGAGCCATATTGATAGCAAGATTTGGATCTGAACCTTTA CCTTCAACTACTGTCTCATTCCTTTGTTTCCAACCATTGATATTGAGTTAATGTAAATGGACCAGAATTAGGTTGAGATA TGTTCTTGTTTATGTTTTTAGTTTTTACGAATATTTTTTATTGGATCAAGCGCTTACCACTACGCCAAAAGCAATTGTTG TTAGTGAGGGCGCAACTTTGTTTCTTTATAGCACATAGTCTTCAAGAGGCTGCGATTTTAAGCGTTATGTGGTGAGATGT TAAGTCCATCAAATCCTAAGGGTGACACTAGATTAATAAATCCAACAGTTTTGTGATTTGTTTTCCTTTTTGGTGATGAT TCTTTGTCAAGGAGATTAGTTGCTAATTTTCATATGATGCTTAGGAGTGAGAATAGGTCGGGTAAAGAACGCGGCCCAAG CCCGACTTGCATTTTAATTTCATTGCCCGAGTTTGGCTTGTAGTTTTTCATAGGTCAAGCTTTAAGTCTTTTAGACGGCT CATTTTAGTGTACTAGCCTGTTTACAAGTCTATTTAATAAACAACTTTGTCTTAAAGACACAAAACACTCACCGGCTAAT AGACATTTTTCCCAAG
CDS sequence (LotjaGi5g1v0094300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAGCACAGATGTGAAGCTCCAGAAGGTCACCGTCTCTGCGTCAACAACTGCGGCTTCTCCGGCAGTCCAGC CACCATGGATCTCTGCTCCAAATGCTACAGAGACATCCGTTTGAAGGAACAGCAAGAAGCGTCGACCAAATCCACAATCG AAACCGCTCTCTCCAGCTCCTCCTCCGTCGCGAAACCGCCGTCTTCCACCTCATCTCCATCTCCAGCAGTCGATCTTGCA CCGCCGGCTAAGGCGGAAACCGCGTCGATCTCATTAACCGCCGGTCCGATTCTCCAGGCGGCTCAGCCGAACCGGTGCGC GACGTGCCGGAAGCGCGTGGGGCTGACCGGGTTCAAGTGCAGGTGTGAGGTGACGTTCTGTGGGGCCCACAGGTACCCGG AGAAGCACGCGTGTTCGTTTGATTTCAAGACGGTGGGGAGAGAGGCAATAGCTCGGGAGAACCCGGTGGTGAGAGCGGAG AAGCTGCGGAGGATTTGA
Protein sequence (LotjaGi5g1v0094300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEHRCEAPEGHRLCVNNCGFSGSPATMDLCSKCYRDIRLKEQQEASTKSTIETALSSSSSVAKPPSSTSSPSPAVDLA PPAKAETASISLTAGPILQAAQPNRCATCRKRVGLTGFKCRCEVTFCGAHRYPEKHACSFDFKTVGREAIARENPVVRAE KLRRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 164 | 164 | 4.4E-63 | – | |
| PANTHER | 1 | 164 | 164 | 4.4E-63 | – | |
| ProSiteProfiles | 10 | 44 | 35 | 9.682 | ||
| SMART | 13 | 37 | 25 | 1.4E-7 | ||
| Pfam | 14 | 37 | 24 | 2.5E-11 | ||
| SUPERFAMILY | 15 | 60 | 46 | 6.41E-13 | – | |
| MobiDBLite | 44 | 83 | 40 | - | – | |
| MobiDBLite | 48 | 76 | 29 | - | – | |
| Gene3D | 84 | 161 | 78 | 9.2E-28 | ||
| SUPERFAMILY | 99 | 160 | 62 | 1.26E-28 | ||
| ProSiteProfiles | 103 | 146 | 44 | 12.483 | ||
| Pfam | 106 | 142 | 37 | 7.5E-10 | ||
| SMART | 106 | 143 | 38 | 2.1E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0094300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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