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LotjaGi5g1v0098900.1

Overview

Field Value
Gene ID LotjaGi5g1v0098900
Transcript ID LotjaGi5g1v0098900.1
Lotus japonicus genome version Gifu v1.2
Description Cell wall invertase; TAIR: AT2G36190.1 cell wall invertase 4; Swiss-Prot: sp|P26792|INV1_DAUCA Beta-fructofuranosidase, insoluble isoenzyme 1; TrEMBL-Plants: tr|A0A151U3J2|A0A151U3J2_CAJCA Beta-fructofuranosidase, insoluble isoenzyme 1; Found in the gene: LotjaGi5g1v0098900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:17797097..17799966) extracted from Lotus japonicus Gifu genome v1.2.

ATAAAATTGTGTAATGGACGCATGCATCAATCAATCATCTACATGCAGATCCAAATGGTGAGATTCTTTCTTCCCACTTT TGATGTTTTTCCTTTACTTAGCATTTTGTTTTCATCTTTTCATTTTGTCCATAATGTAATTTTTCTCTTGTACAATGCAT GTTGCAATTCCCTTCACTATTGGAAACAACGCAGGTCCAATGTTCTACAATGGAGTCTACCATCTATTTTACCAGTATAA CCCAAAGGGTTCAGTTTGGGGCAACATTGTATGGGGCCACTCAGTATCAAAAGATCTCATCAACTGGAAAGAATTAGAAC CAGCCCTTTACCCATCCAAGCCCTTTGACAAATACGGGTGCTGGTCCGGGTCGGTCACCATCCTCCCGGGCCAAGGACCC GTGATGCTTTACACCGGGGTTGTTGACAAGCAAAGCAATGAGGTCCAATGCTATGCTATACCCGAGAACCTATCCGACCC GTATCTCACAAAATGGGTAAAGCCCGACGCCTTCAACCCGATTGCGGTGGCTGAAAATGGCATAAATGCGTCAGTGTTCC GGGACCCAACCACCGCGTGGCGGGGCAAGGATGGGCATTGGAGGATTTTGATTGGTGGGAAAATGAAGACTAGAGGGATG GCTTTTTTATATAGGAGCAAGGATTTTGTGAAATGGACCCGAACCAAACATCCAATCCATTCAGCTAAATCCACGGGTAT GTGGGAGTGTCCGGATTTCTACCCAGTTTCTTTGAAAGGGGGAAAAGGGTTGGACACGTCAACGGTTGGGAATAGTGTTA AGCATGTTCTGAAAAATAGTCTTGACATAACTAGGTATGAATACTATACAATTGGGACGTATTTTTGGAAAAAGGATAAG TATATCCCGGATAACACTTCAGAGGATGGTTGGGGTGGGCTTAGATATGATTATGGCAACTTTTATGCTTCTAAGTCATT CTTTGACCCAAGCAAAAATAGAAGGATATTGTGGGGCTGGGCAAATGAATCAGATTCTAAAGAGGATGATGTTAAGAAAG GTTGGGCAGGAATTCAGGTACAAAGTTAAATTCTTATGCTGCTATTATATATAAGTTACATTGATAGCATTTTTTGTGAT GTGTGATAGAATTTTTCATATAACATTTTTTTTATCAACATGTGTTGTGATGTGTGATACATGACATTTACCCTTTTCTA GTTTATTTACATATATGCGCTTTATATATTAAAATTTTCAGGCAATTCCAAGAACTGTGTGGCTTGATTCTCAAGGGAGA CAGTTAGTACAATGGCCTGTTGAAGAATTAAATGGTCTTAGACAGAAACAAGTTATGATTAGTAGCCAAAAGCTTAAGAA GGGAGATTATGTTGAAGTAAAGGGGATTACAGCAGCTCAGGTTCCAATTACTGAATTGTTACCTTAATATTATGACAATT AATCTTTTACTTGTTAATGACATGATTTATACATTGCAGGCTGATGTAGAAGTTAGCTTCTCATTCTCAAGTTTGGACAA GGCTGAAGCATTTGATCCCAAGTGGGTGAATGCACAAGAACTTTGTGCACAAAAGGGTTCAAAGGTTCAAGGTGGGATTG GACCATTTGGGCTTCTGACATTGGCTTCAAAAAAGCTGGAGGAGTTTACTCCTGTGTTCTTCAGAGTTTTCAAAGCTCCA AAGAACCATGTGATTCTCATGTGCTCTGATGCAACAAGGTAACGTGAGAGCAATATAATTCATGTCTATTTGATGTTTAG ACAATGTTTTTTAAAGGAAATAGTTCAAACAATATTGTTTTCTTAACTTAACAGCTCGTTATTTTCTTCAAATAATTGCT TTCTCAGAACTATATGCATGTTTTTCTAACTTTTACACTTCTCAACAGATCCTCTTTGAAGAGTGAATTGTACAAGCCAT CATTTGGAGGCTTCCTAGATGTGGATTTGGCCCATAAGAAACTTTCACTTAGGAGTTTGGTGTGTGCAAACCTTCTCTCA TTTTTGTCTTACATTCACATTCATGAACTCTATGCGAAGCCAATGGTAAATAATTTCTTAATGTTGGGATTTTAATGGCA GGTTGATCACTCCGTAGTGGAGAGTTTTGGAGCAGGAGGGAGAACTAACATCTTGTCTAGGGTATATCCAACGCTAGCAG TGAAGGAAAATGCTCATTTGTTTGTTTTCAACAACGGTACTGAGAAGGTCACAATTGAGAAGCTCAAAGCTTGGAGCATG AAATCTGCACTCCGAAACTAACCAGCAAGATATAAATGTGTGATAGAGAGAGAGAGCATAAAGTAGAAAAAGCATTTCTC CTTTAAAAATGTGTTCTATTTAGCCGAAGAACATACCCATGGTGTTGTCAAGTACACTTAAGCTTCAATACTATATTATG TTTTAATGTAGAAATAATTTTAATATCTTCTATATTCGCAATGCAGATAAATTGTAGTTATTACACTAAGAAAACGTTCA ACTTTTTACTGTTCTATTTGGATGGCCACACTACTCAGCATATGCGATCTTTTACCAATACTTGTGGCTAGGACAGAATA AGAGATGAGAAAAAACAAAGACTGAAAAGTGAAACAGATCATGTCATGGAAGTATTTAAAGTTTAAACAGATCATAGCAT ACATAGTCAAATGCTAGACAAATAAATCCAAAACCATTTGAAACCCGGTTAACACCAATGTATGAATATAACCAACTGTA ACAAGAGAAATCAACTACTACTCCTGAGTCGCCCCAAGAGACGAACAAAATCAGCCTTAGTTTACTTGATCTTCTTCTTT GGCCTCAACTGCAAGACATAAACAACATTTCAGTGCCACATAGTTTGTCACCACTAAGCACAGCAGGAAT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0098900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCATGTTGCAATTCCCTTCACTATTGGAAACAACGCAGGTCCAATGTTCTACAATGGAGTCTACCATCTATTTTACCA GTATAACCCAAAGGGTTCAGTTTGGGGCAACATTGTATGGGGCCACTCAGTATCAAAAGATCTCATCAACTGGAAAGAAT TAGAACCAGCCCTTTACCCATCCAAGCCCTTTGACAAATACGGGTGCTGGTCCGGGTCGGTCACCATCCTCCCGGGCCAA GGACCCGTGATGCTTTACACCGGGGTTGTTGACAAGCAAAGCAATGAGGTCCAATGCTATGCTATACCCGAGAACCTATC CGACCCGTATCTCACAAAATGGGTAAAGCCCGACGCCTTCAACCCGATTGCGGTGGCTGAAAATGGCATAAATGCGTCAG TGTTCCGGGACCCAACCACCGCGTGGCGGGGCAAGGATGGGCATTGGAGGATTTTGATTGGTGGGAAAATGAAGACTAGA GGGATGGCTTTTTTATATAGGAGCAAGGATTTTGTGAAATGGACCCGAACCAAACATCCAATCCATTCAGCTAAATCCAC GGGTATGTGGGAGTGTCCGGATTTCTACCCAGTTTCTTTGAAAGGGGGAAAAGGGTTGGACACGTCAACGGTTGGGAATA GTGTTAAGCATGTTCTGAAAAATAGTCTTGACATAACTAGGTATGAATACTATACAATTGGGACGTATTTTTGGAAAAAG GATAAGTATATCCCGGATAACACTTCAGAGGATGGTTGGGGTGGGCTTAGATATGATTATGGCAACTTTTATGCTTCTAA GTCATTCTTTGACCCAAGCAAAAATAGAAGGATATTGTGGGGCTGGGCAAATGAATCAGATTCTAAAGAGGATGATGTTA AGAAAGGTTGGGCAGGAATTCAGGCAATTCCAAGAACTGTGTGGCTTGATTCTCAAGGGAGACAGTTAGTACAATGGCCT GTTGAAGAATTAAATGGTCTTAGACAGAAACAAGTTATGATTAGTAGCCAAAAGCTTAAGAAGGGAGATTATGTTGAAGT AAAGGGGATTACAGCAGCTCAGGCTGATGTAGAAGTTAGCTTCTCATTCTCAAGTTTGGACAAGGCTGAAGCATTTGATC CCAAGTGGGTGAATGCACAAGAACTTTGTGCACAAAAGGGTTCAAAGGTTCAAGGTGGGATTGGACCATTTGGGCTTCTG ACATTGGCTTCAAAAAAGCTGGAGGAGTTTACTCCTGTGTTCTTCAGAGTTTTCAAAGCTCCAAAGAACCATGTGATTCT CATGTGCTCTGATGCAACAAGATCCTCTTTGAAGAGTGAATTGTACAAGCCATCATTTGGAGGCTTCCTAGATGTGGATT TGGCCCATAAGAAACTTTCACTTAGGAGTTTGGTTGATCACTCCGTAGTGGAGAGTTTTGGAGCAGGAGGGAGAACTAAC ATCTTGTCTAGGGTATATCCAACGCTAGCAGTGAAGGAAAATGCTCATTTGTTTGTTTTCAACAACGGTACTGAGAAGGT CACAATTGAGAAGCTCAAAGCTTGGAGCATGAAATCTGCACTCCGAAACTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0098900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHVAIPFTIGNNAGPMFYNGVYHLFYQYNPKGSVWGNIVWGHSVSKDLINWKELEPALYPSKPFDKYGCWSGSVTILPGQ GPVMLYTGVVDKQSNEVQCYAIPENLSDPYLTKWVKPDAFNPIAVAENGINASVFRDPTTAWRGKDGHWRILIGGKMKTR GMAFLYRSKDFVKWTRTKHPIHSAKSTGMWECPDFYPVSLKGGKGLDTSTVGNSVKHVLKNSLDITRYEYYTIGTYFWKK DKYIPDNTSEDGWGGLRYDYGNFYASKSFFDPSKNRRILWGWANESDSKEDDVKKGWAGIQAIPRTVWLDSQGRQLVQWP VEELNGLRQKQVMISSQKLKKGDYVEVKGITAAQADVEVSFSFSSLDKAEAFDPKWVNAQELCAQKGSKVQGGIGPFGLL TLASKKLEEFTPVFFRVFKAPKNHVILMCSDATRSSLKSELYKPSFGGFLDVDLAHKKLSLRSLVDHSVVESFGAGGRTN ILSRVYPTLAVKENAHLFVFNNGTEKVTIEKLKAWSMKSALRN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00640
2 477 476 7.6E-234
IPR001362
PANTHER
PTHR31953
13 520 508 7.2E-298 –
Gene3D
G3DSA:2.115.10.20
13 330 318 9.3E-235
IPR023296
Pfam
PF00251
13 320 308 1.1E-98
IPR013148
PANTHER
PTHR31953:SF55
13 520 508 7.2E-298 –
CDD
cd18624
14 309 296 1.11808E-164 –
SUPERFAMILY
SSF75005
14 321 308 5.34E-96
IPR023296
SUPERFAMILY
SSF49899
320 520 201 1.9E-34
IPR013320
Pfam
PF08244
323 516 194 9.1E-26
IPR013189
Gene3D
G3DSA:2.60.120.560
331 518 188 9.3E-235 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0098900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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