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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0103200 |
| Transcript ID | LotjaGi5g1v0103200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein clpB; TAIR: AT3G52490.1 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9SVD0|SMXL3_ARATH Protein SMAX1-LIKE 3; TrEMBL-Plants: tr|A0A0S3SUQ6|A0A0S3SUQ6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0103200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:18767365..18772343) extracted from Lotus japonicus Gifu genome v1.2.
GCCCCCACTTACAAATACCGAAACTTTTTTACGAAATTTGGTGTGTGTATGTGGATGTATGAAGAAGAAAGAAAGAGTGA GGGAGCAAAGCTGAGTTGCCTTTGATACTGCTGCAATAGTCCTGCTTGTCAGCACATGCAATCCACTTTCCACAACAAAA TCGACTTTGGACCCCAAAATTTTACCTCACCCACAAGAAAAGCACACCCCACCTCTCATAAATTTCATGCCCCTTCTTCT ACCTCGTCCCCTCTCACTCTCTCTCTTAGACCAAACCACCTTCTTTTTCATTCATATTCTAGACACAAGATGAAGTATTC ACCCGTTTATACTAGACTATAACAAAGAGGCCTCAAACCTAGAGCTTCCAGATAAATACCAACCAACCCTTTTGTTCTCC ACCAGTCCATCCTAAACAGTAAGTTCCTCCTCTCTCTCACTCAGGTATCATTCTTCTCCCTAACCAAATGATCAACATCA CCTTACTGAAAAACAAGATGCCAAATTCCATTGGAACTCACTATTAACTTCTCTAGATTCTTCTGTTTTCTTTTTCTTGC TCTTGTTTTAGATTCAAGAAAGATGAGAACTGGAAACTGTGCTGTGCAACAAGGCCTAACTGCCGAGGCAGCAAGCTTAG TGAAACAAGCAGTGACCCTCGCGAAACGCCGTGGCCACGCTCAGGTGACTCCACTCCACGTGGCAAACACTATGCTCACT GTCACCAACGGTTTATTCCGTACAGCATGTCTCCAATCCCACTCTCACCCTCTTCAGTGCAAGGCCTTGGAGCTTTGCTT CAACGTCGCCCTCAATCGGCTGCCGGCGTCCACAGCTTCAAGCCCCATGTTGGGTGGTGGTGCTCACAACCACCACTCTC AGTACCCTTCCATCTCCAACGCCTTAGTCGCCGCCTTCAAGCGCGCTCAGGCGCACCAGCGCCGTGGATCGGTCGAGAAT CAGCAGCAGCCGCTATTAGCAGTGAAGATTGAGCTTGAGCAGCTCATTATTTCAATCTTGGATGATCCTAGTGTTAGCAG AGTCATGAGAGAAGCTGGGTTTTCTAGCACTCAAGTGAAAAGCAATGTTGAACAAGCTGTTTCCTTGGAAATATGCTCTC AGAATAACAACCAAAACAACAACACTTCAAAGGAGAACAACAATAATCTAATTCTCTCTTCACCTTCTTCTCATGAGACT GTGGGTATGGTTAGGGCTGAGGATATAGAAAGCGTGGTGGAGAATTTGGCGAGTCAAAGAAAAAGATGTACTGTGATTGT GGGAGAGTGTGTGGCTAGTCTTGAAGGTGTGGTTAGAGGAGTGATGGAAAAATTTGATAAAGGGAATGTTGGGGAGTCAC TTAGAGGTGTCAAGTTTATCACTCTTTCTCTTTCTTCTCTTGTAAAATTTTCAAGGGAAGAGGTTGAACAAAAGGTTGAA GAGCTTAGGGGTCTTGTGAAAATGGCCTCTCATGGGAAAGGGTACGTTTTGTATGTTGGGGATCTTAAATGGGTGTTTGA TTATAGGAAAGGGAGAGGGTGTTACTGCCCTGTGGAGCACATGGTAATGGAGATTGGAAAGGTGGTGAGTGGGGTTGGAG AGAGTGCAAGGTTTTGGGTGATGGGTGTTGCCACTTTCCAAGGTTACATGAGATGTAAAAATGGCCAGCCTTCATTGGAG ACTCTTTGGGGTCTTCATCCTATTACTATCCCAGCTGGAAGTTTGAGTTTGAGCCTCATCACTCACAGGTAAAGCAGTTT GGTAAAGTTGGTTATAATTGTATGTATGGCTTTGATTCAATCTTTGTTATTATTACCATCCATTTTGAAAACTGTGGAAG AATTAAATATCTATTAAGTGTATACACTATTTGTATGTTTAAGCATCATTTTTGTACTGAATATTTGTTTTTTCTAATTT GAATGTCTCTTGGATGTCTATACTATGCACATGTCCACAATCGCTTAACAAGCTCATAATGGACATCCCCAAAGGGCAAA AAATGGAACTGTCTTTTGATCTTTAAAGGTTAAAACTTGAAAAGGAAAACATATATGGGTTGGAAGCCATATAACATACA TGCTAATCCCAAACAATTTAGGGAAACAACTTTTTTTTCTTTTTTTTTTTACTTTTTCCTTCTCTACCAATTGTTTCTCA ACTAGTGCTGCATATGAGAAGGGAAAAATGGCAAAAGATGATTTAAAGTGAATGCACTGAAACTAACAACATGTCAGTCA TTATAGTGTTGCTTTCTTAGTTGATTAGAACTAAGTAGAAAAGAGGTTTTTTTTTTCTTCTATTAACAATGACAACTAGT TTCTCTTTTTTCTCCTTTACCATTGTATTGTTACTATTCTGAATGTCGACTTTGAAGGTGGAACATGACCTGAAATAAAT GATGAAGTGAGTCATTGATATATCTTCTCTTTTTACTCTCAGTGGTCTACAAAATGAGCCCACCAAGGAGAAAGCTGACA GCAACAGAAGTAGCTGGCTATTGCTTGAAAATGATGATCAGAAGCAACCGGCTTGCTTTGCGGAACCCTCAGGGAAAATT GAGACCGAGGTTCGAAGCTTGCTGAGTAGTGATGCTTGTAACAGTGATTCCTCAACTTCAAGCCTTCCTGCATGGCTTCA ACAGTATAAGAATGAGAATAAAGCAACTACCTACAATCATCAGGTCTTGATTATCACAATGATAGATTGATTATAATCAT AGCATGATTTCATCAATTTCTAGTGAATGGTCAAATTGGTCACAGAAAGTGTTCGGGTGCTGGCAAGTTCATGCGCGGAC TTAGTACCCCATAGTCTCTAATCGTATAAAATATCGGTTAAATTAGTCTTTTTGGTGAAATTAAACGTCGATCTATGGAC TAACTTGACTGACATTTTCCAGGAACAAAAATCTCTATTCTAAGAATGCAATTACCAAGGTCCAACACTTTGAGCGACCA AATTTTGACCATTCACTACTCATTTAATTTATTTTTCTTTTAGAAATCAATTTTAACATTCAAAAACTACCTACAAAGCT TCGACTTTAAAATCAAGAGTAGAAAAATTTCTAAACACACTAATGAACTAAGCATAACATTTATATTATATTAATAGTAT TACAACAAATATTACAAAATCTATCCTCAAGTAATTTTTGAGTGAGAATAGGCACATATATCTCTTTCTTTTATTACATC ACATCATATATCATATATTCTCTTCTAATTTTTTTTCTAATTTTGGGAGTTAAATTGCTGTATTATACGGATGTGTAAAA ATTATTTTTCAATTTTAATTACTCAATGGCAACATACATTATGTATATATTTTTTAACTTTCAAAAAAAGACCATTATAA AAAAATGTTTATGAAATGCAGAAAGAGATTAAATAAAATACAAAGTGAAAATGATATACAAGAGAAAGTGAGGTGTGAAC AAACCTCTAAAAGATTAATTGATTTTACTAGTATTTTTTGAACTTGAAACAAATACATACTATCCCTATGCAAGAATCAT TCTCTATGTTGTATCTATACTTGTACACTAACCGTATAAGATGAAATGTTAACTTTTTTCATGTATATTCTAACAGGACT GTGTCCCAGTGGGAGAGCTTTGCAAAAAGTGGAGCTCTATGTGTGGCTCAACCCAAAAACAACCCTATCTTTCTGAAAAA GCTCTCACATACACACCATCCTCCGTGTCACCTTCTTCATGCACTTCAGGGTTCTCATACGAACATCACCAACATACTAA CAAAAACCCACAAAGCAACAACCACAATTTCTGGATCTCTGAAAGTAGTAGCAAACTCAATGAATCAACTTTGCGAGTTT ACAGTTCCAACCCTAATTCTACTTCTTCTAGTGATGTAATGGAAGTGGAGTACGAGAAAAGGTTCAAAGAGTTCAACTCA GAGAAAATGAAAAGCCTGTGCAATGCCTTGGAGAAAAAGGTGCCACGGCAGAAAGATATAATTCCAGAAATTGCAAGCAC CGTTTTGCAATGCCGGTCCGGGATGATAAGAAGAAAAGGGAAAGTGATAAACAACAATGAGGTGAAAGAAGAAACTTGGT TGTTTTTCCAAGGTGTGGATGTTGCAGCAAAAGAGGAAATAGCAAGGGAACTAGCCAGGCTTATTTTCGGTTCCCCGAAC GACTTTGTTTCAATATCTCTGAGCAGTTTCGCAGATTCAACGGAGGATTGTTGCAGAAACAAAAGATCAAGAGATGAACA AAGTTGCAGTTACATTGAGCGGTTCGCGGATGCAATCTCTTGCAACCCTCATAGGGTGTTCTTAGTTGAGGACATTGAGC AAGTAGATTATTGTTCTCAACTTGGTTTCAAAAGGGCTATTGAAAGAGGAAGAGTTGTAGACTCGAATGGTGAAGAGATT GCGCTTTGTGACGCGATCATCATTCTCAGCTGTGAGAGTTTCAGTTCAAGGTCAAGAGCTTGTTCTCCTAACAAACAAAA AGCGTGTGAAGGTAATTCTCAAGAAGAGAAGGGTGACAATACTTTGGAGGAAATCACTAGCCCTTGTATTTCTTTGGATT TGAATATTTCCATTGATGATGGTGATGATGGTGGTTGTGATGATGATGAGGACCGGTCGGTGGATGAAATTGGGCTTCTT GAATCTGTGGATAGAATGTTTATCTTCAAATTTCAGAACTTATGAGGAAAAAAGAATTTTAGTAGCTAGCATGTAATCTT TTTCTTTTACTTTCTTCCTTTTTAGGCTATTTTTTCTTTATTCATCTTGTCTTTGTATTCTCTGGCATTTCCTAGGGCTA GGGATGAAAAATTGCGTGCCCTTGAGTTTTATAGTTTTGTAACTACATGTATATTACCAAGGACATCAACTATATCTCTC TGTTAGAGGAATCTGAGCCTTTCTTCTATCAAGTTATTTGTTCCCTTCTGTTTCTAGCTATATGTATACTAAAGGGGTTT CCATTGACTCACATCCAAC
CDS sequence (LotjaGi5g1v0103200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAACTGGAAACTGTGCTGTGCAACAAGGCCTAACTGCCGAGGCAGCAAGCTTAGTGAAACAAGCAGTGACCCTCGC GAAACGCCGTGGCCACGCTCAGGTGACTCCACTCCACGTGGCAAACACTATGCTCACTGTCACCAACGGTTTATTCCGTA CAGCATGTCTCCAATCCCACTCTCACCCTCTTCAGTGCAAGGCCTTGGAGCTTTGCTTCAACGTCGCCCTCAATCGGCTG CCGGCGTCCACAGCTTCAAGCCCCATGTTGGGTGGTGGTGCTCACAACCACCACTCTCAGTACCCTTCCATCTCCAACGC CTTAGTCGCCGCCTTCAAGCGCGCTCAGGCGCACCAGCGCCGTGGATCGGTCGAGAATCAGCAGCAGCCGCTATTAGCAG TGAAGATTGAGCTTGAGCAGCTCATTATTTCAATCTTGGATGATCCTAGTGTTAGCAGAGTCATGAGAGAAGCTGGGTTT TCTAGCACTCAAGTGAAAAGCAATGTTGAACAAGCTGTTTCCTTGGAAATATGCTCTCAGAATAACAACCAAAACAACAA CACTTCAAAGGAGAACAACAATAATCTAATTCTCTCTTCACCTTCTTCTCATGAGACTGTGGGTATGGTTAGGGCTGAGG ATATAGAAAGCGTGGTGGAGAATTTGGCGAGTCAAAGAAAAAGATGTACTGTGATTGTGGGAGAGTGTGTGGCTAGTCTT GAAGGTGTGGTTAGAGGAGTGATGGAAAAATTTGATAAAGGGAATGTTGGGGAGTCACTTAGAGGTGTCAAGTTTATCAC TCTTTCTCTTTCTTCTCTTGTAAAATTTTCAAGGGAAGAGGTTGAACAAAAGGTTGAAGAGCTTAGGGGTCTTGTGAAAA TGGCCTCTCATGGGAAAGGGTACGTTTTGTATGTTGGGGATCTTAAATGGGTGTTTGATTATAGGAAAGGGAGAGGGTGT TACTGCCCTGTGGAGCACATGGTAATGGAGATTGGAAAGGTGGTGAGTGGGGTTGGAGAGAGTGCAAGGTTTTGGGTGAT GGGTGTTGCCACTTTCCAAGGTTACATGAGATGTAAAAATGGCCAGCCTTCATTGGAGACTCTTTGGGGTCTTCATCCTA TTACTATCCCAGCTGGAAGTTTGAGTTTGAGCCTCATCACTCACAGTGGTCTACAAAATGAGCCCACCAAGGAGAAAGCT GACAGCAACAGAAGTAGCTGGCTATTGCTTGAAAATGATGATCAGAAGCAACCGGCTTGCTTTGCGGAACCCTCAGGGAA AATTGAGACCGAGGTTCGAAGCTTGCTGAGTAGTGATGCTTGTAACAGTGATTCCTCAACTTCAAGCCTTCCTGCATGGC TTCAACAGTATAAGAATGAGAATAAAGCAACTACCTACAATCATCAGGACTGTGTCCCAGTGGGAGAGCTTTGCAAAAAG TGGAGCTCTATGTGTGGCTCAACCCAAAAACAACCCTATCTTTCTGAAAAAGCTCTCACATACACACCATCCTCCGTGTC ACCTTCTTCATGCACTTCAGGGTTCTCATACGAACATCACCAACATACTAACAAAAACCCACAAAGCAACAACCACAATT TCTGGATCTCTGAAAGTAGTAGCAAACTCAATGAATCAACTTTGCGAGTTTACAGTTCCAACCCTAATTCTACTTCTTCT AGTGATGTAATGGAAGTGGAGTACGAGAAAAGGTTCAAAGAGTTCAACTCAGAGAAAATGAAAAGCCTGTGCAATGCCTT GGAGAAAAAGGTGCCACGGCAGAAAGATATAATTCCAGAAATTGCAAGCACCGTTTTGCAATGCCGGTCCGGGATGATAA GAAGAAAAGGGAAAGTGATAAACAACAATGAGGTGAAAGAAGAAACTTGGTTGTTTTTCCAAGGTGTGGATGTTGCAGCA AAAGAGGAAATAGCAAGGGAACTAGCCAGGCTTATTTTCGGTTCCCCGAACGACTTTGTTTCAATATCTCTGAGCAGTTT CGCAGATTCAACGGAGGATTGTTGCAGAAACAAAAGATCAAGAGATGAACAAAGTTGCAGTTACATTGAGCGGTTCGCGG ATGCAATCTCTTGCAACCCTCATAGGGTGTTCTTAGTTGAGGACATTGAGCAAGTAGATTATTGTTCTCAACTTGGTTTC AAAAGGGCTATTGAAAGAGGAAGAGTTGTAGACTCGAATGGTGAAGAGATTGCGCTTTGTGACGCGATCATCATTCTCAG CTGTGAGAGTTTCAGTTCAAGGTCAAGAGCTTGTTCTCCTAACAAACAAAAAGCGTGTGAAGGTAATTCTCAAGAAGAGA AGGGTGACAATACTTTGGAGGAAATCACTAGCCCTTGTATTTCTTTGGATTTGAATATTTCCATTGATGATGGTGATGAT GGTGGTTGTGATGATGATGAGGACCGGTCGGTGGATGAAATTGGGCTTCTTGAATCTGTGGATAGAATGTTTATCTTCAA ATTTCAGAACTTATGA
Protein sequence (LotjaGi5g1v0103200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTGNCAVQQGLTAEAASLVKQAVTLAKRRGHAQVTPLHVANTMLTVTNGLFRTACLQSHSHPLQCKALELCFNVALNRL PASTASSPMLGGGAHNHHSQYPSISNALVAAFKRAQAHQRRGSVENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGF SSTQVKSNVEQAVSLEICSQNNNQNNNTSKENNNNLILSSPSSHETVGMVRAEDIESVVENLASQRKRCTVIVGECVASL EGVVRGVMEKFDKGNVGESLRGVKFITLSLSSLVKFSREEVEQKVEELRGLVKMASHGKGYVLYVGDLKWVFDYRKGRGC YCPVEHMVMEIGKVVSGVGESARFWVMGVATFQGYMRCKNGQPSLETLWGLHPITIPAGSLSLSLITHSGLQNEPTKEKA DSNRSSWLLLENDDQKQPACFAEPSGKIETEVRSLLSSDACNSDSSTSSLPAWLQQYKNENKATTYNHQDCVPVGELCKK WSSMCGSTQKQPYLSEKALTYTPSSVSPSSCTSGFSYEHHQHTNKNPQSNNHNFWISESSSKLNESTLRVYSSNPNSTSS SDVMEVEYEKRFKEFNSEKMKSLCNALEKKVPRQKDIIPEIASTVLQCRSGMIRRKGKVINNNEVKEETWLFFQGVDVAA KEEIARELARLIFGSPNDFVSISLSSFADSTEDCCRNKRSRDEQSCSYIERFADAISCNPHRVFLVEDIEQVDYCSQLGF KRAIERGRVVDSNGEEIALCDAIIILSCESFSSRSRACSPNKQKACEGNSQEEKGDNTLEEITSPCISLDLNISIDDGDD GGCDDDEDRSVDEIGLLESVDRMFIFKFQNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 830 | 830 | 0.0 | – | |
| PANTHER | 1 | 830 | 830 | 0.0 | – | |
| ProSiteProfiles | 8 | 176 | 169 | 32.135 | – | |
| Gene3D | 9 | 175 | 167 | 3.9E-47 | ||
| SUPERFAMILY | 12 | 169 | 158 | 4.16E-8 | ||
| Pfam | 23 | 52 | 30 | 0.26 | ||
| Pfam | 136 | 173 | 38 | 0.41 | ||
| Gene3D | 177 | 368 | 192 | 3.7E-6 | – | |
| MobiDBLite | 181 | 202 | 22 | - | – | |
| Gene3D | 557 | 787 | 231 | 6.8E-24 | – | |
| SUPERFAMILY | 571 | 750 | 180 | 1.26E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein metabolic process | The chemical reactions and pathways involving a protein. Includes protein modification. |
Expression pattern of LotjaGi5g1v0103200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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