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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0104400 |
| Transcript ID | LotjaGi5g1v0104400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; TAIR: AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SJ52|NHL10_ARATH NDR1/HIN1-like protein 10; TrEMBL-Plants: tr|A0A072U3C0|A0A072U3C0_MEDTR Harpin-induced-like protein; Found in the gene: LotjaGi5g1v0104400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:19397497..19399775) extracted from Lotus japonicus Gifu genome v1.2.
CTGAGTGGAAAGGTCAAAACGAGTCAAAATAAATGGTTCATTCATGCCCATGGTATTGGTCTGCCAAGTTGATCTTCAAA TTCAAGCAGATATTTCAATGCCCCTTATCCTATAAAGTATAAACTTAACTTTGCATCCTCCACTCACACTTCACCCACTT GCTCCTCATAATAAACTCCTCTTTCCATTCCCTCAACTAACTGCTTCTGCACTTATGGCCGATGATAAGCACCTAAACGG TGCCTACTACGGCCCCTCCATCCCTCCGCCGGAGCAGCAACGTCCCCGCCGTCACCGCGGCAGAAACTGCTGCAGCTGCT TCTTCAGCTTCCTCTGGAAGGCTCTCCTCGCAATCATCCTCTTCCTCGCCCTCGTATTCCTCATCTTCTACCTCATTGTC CAACCACGCGCCTTCAAGTTCCATGTCACCGACGCCAAACTCACACAGTTCAACTACACCACCACCAACAACAACAACAG CAACAACCACCTCCTTCGCTACAACCTTGTCCTCAACTTCACCGCCCGCAACCCGAACAAAAAGCTCAACATCTACTACG ACGAGGTGGAGGCCGTCGCGTTCTACGACGGCATCCCGTTCGGTTCGACCGACGTGATCACGTGGCGGAACTCGTTCCGG CAGTACAAGAAGAGCACCGACCGCATGAGCGGCGTTTTGAGCGGCGAACATGCGGTGGTGCTCGACCGTGATCAGGTGGT GGATTTTGAGAGGGATATGAGGGATAGTGTTTTTGACATCGATGTGAAGCTCCATATCAGGATGAGGTTCAGGCTTGGAG ATTCTATAGGTGGTACTACTAAGGTCAAGGTTAAGTGTGAGCTTGAGGTTCCTTTTAGTTCTAATAATCATGGGAAATCG GTGACTCATGTGTTCCTGCCCACTGAGTGTGATGTCAATTTCTGAGAACGTTGTGTTTTTATATTTTCACCTTTGTTTTT GTAATTCTGGATTTTGTTTACATAAACTACTTCAAGTTGCATTGATAATTAAATCTAATTTGGAGATATGGGTTTATTGA AATTGACTCTTCTTATGTGTAAATTATGCATGCCTAATTTTATATACTTGCAATCATCCAAAATCTGAGCTATTGGATGC TCCAAATCTTTCTATTCCACATGGTGTTTAGATGTTGATATGGCATGGGGAGGTATGTGATGATCAATCTTTCAAGGTTG TAGCAGATTGTGCATGTATGGAACACAGAATTATGGCCATTAGTGATCATGTTCTCTTGAGTTTGATTTGAGCCACCATT CCAACAACTAATATAAGCAGTAATTGCAGGTAATTTATTGGATTATGAGAATCACAATTGGCGTTTACTTTGGAAGATGT AATCAGTGGTGTTGAAAATTCGTAAGCTAATTTTTCCTAACAGGTTTCATAAGAAAATCAGCTGCGCCTTTTAACATGCA TTTCAACACCAAGCTAACTGAATCCTGAGAAGACATCACTACACAGTCTATGAGAATAAACATATAACGGGAATGTTTTT GCATACATCATGCTCCATGATCATAGAAAGTAGAGCAAACCCAGATATTGATTGCTACTCCAATTCTGTCAATCTAGCTC AGCTAAGGTGTCTTACTCTTCAACGTTTCCCATGCCTTTAATCCGCTAGGAACCGTTACAACTCTGTAACAGCATTTTCT CAGAAGTGCAGCAACGATATGGCGAGTGTAATGATCGGCTTCGAAGAGCAGAACAGTGAACACCTCTTGTTGCAGAAACC TCTCACACCTAACCAGCTCAGCAGAACGATCACCTCATCCTCAGCCAATAAACACGGGAAAGTATCTGAAGAATTTGCTG ATTATTAGTTGAAGGAAAGGATTTTGAACCACAAGTTTTAAACATTTATGCTGACAAAATTTACTTTGTACCAGTTCTTT TGATTTTCTGCTGCTAATTTTTTTTGTAGATTGGCATTTCACGTTTTCTCCAAAATAGGCTTCTCCTCATTGGTATATAC CCAGAGTACTGTTAACTATTTACAAGTACATGGCTTATAGAAGCATAGAATCAGAATTGCAGCAGAGATTGCCACTGCCC TCCTTTTTCTTCGCCTGAGAAAACTAAGACAACCCACTTTGGCAGCAAACATCTCGATTAATCACGGTAATAGCGGAAAC AGTATCATTGTAGGCATATAAATTGAGAGAAATTATAATCTGTTGAAATGTTGAAATGAACTTCAAACATAGTATTTGAT TATTGAAATTTAATAGAATCCTTGAGTCTAAAAAAAAAG
CDS sequence (LotjaGi5g1v0104400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGATGATAAGCACCTAAACGGTGCCTACTACGGCCCCTCCATCCCTCCGCCGGAGCAGCAACGTCCCCGCCGTCA CCGCGGCAGAAACTGCTGCAGCTGCTTCTTCAGCTTCCTCTGGAAGGCTCTCCTCGCAATCATCCTCTTCCTCGCCCTCG TATTCCTCATCTTCTACCTCATTGTCCAACCACGCGCCTTCAAGTTCCATGTCACCGACGCCAAACTCACACAGTTCAAC TACACCACCACCAACAACAACAACAGCAACAACCACCTCCTTCGCTACAACCTTGTCCTCAACTTCACCGCCCGCAACCC GAACAAAAAGCTCAACATCTACTACGACGAGGTGGAGGCCGTCGCGTTCTACGACGGCATCCCGTTCGGTTCGACCGACG TGATCACGTGGCGGAACTCGTTCCGGCAGTACAAGAAGAGCACCGACCGCATGAGCGGCGTTTTGAGCGGCGAACATGCG GTGGTGCTCGACCGTGATCAGGTGGTGGATTTTGAGAGGGATATGAGGGATAGTGTTTTTGACATCGATGTGAAGCTCCA TATCAGGATGAGGTTCAGGCTTGGAGATTCTATAGGTGGTACTACTAAGGTCAAGGTTAAGTGTGAGCTTGAGGTTCCTT TTAGTTCTAATAATCATGGGAAATCGGTGACTCATGTGTTCCTGCCCACTGAGTGTGATGTCAATTTCTGA
Protein sequence (LotjaGi5g1v0104400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADDKHLNGAYYGPSIPPPEQQRPRRHRGRNCCSCFFSFLWKALLAIILFLALVFLIFYLIVQPRAFKFHVTDAKLTQFN YTTTNNNNSNNHLLRYNLVLNFTARNPNKKLNIYYDEVEAVAFYDGIPFGSTDVITWRNSFRQYKKSTDRMSGVLSGEHA VVLDRDQVVDFERDMRDSVFDIDVKLHIRMRFRLGDSIGGTTKVKVKCELEVPFSSNNHGKSVTHVFLPTECDVNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 38 | 38 | - | – | |
| PANTHER | 24 | 234 | 211 | 8.2E-92 | – | |
| PANTHER | 24 | 234 | 211 | 8.2E-92 | – | |
| Phobius | 39 | 62 | 24 | - | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 63 | 236 | 174 | - | – | |
| Pfam | 102 | 209 | 108 | 3.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0104400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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